TCONS_00024349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024349
Unique NameTCONS_00024349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024349 ID=TCONS_00024349|Name=TCONS_00024349|organism=Clytia hemisphaerica|type=transcript|length=2320bp
TATATACTTGAACCAAGCGTCGCATCTCGAAAAGAAGAGTAATTAAGTAG
AGAGGAAAAAGACAAAAggatggaaaagctattaaggAAAAGAAATTGAT
CCTTTAGTATCATTAAGAGAAAAAGAAacgttttgtatttttttcgatGA
CAATAGTTTTCATTTGTGATCGCTGAttgattcaaaaaaataattttttt
tttattttgcttgacGTCGTCGAAGTTTGTGTGGCTAAAAGTGCACTTCg
tattaaaaatattcaaaacaaaattttgattttgaaagacATGAGGAATT
TATCCGAATGGGATTAACTACCAAAATTGAGCATCACAGACTGTTATTGG
TCAATAATCACATAAAAACCATTATCACAAAATTATGGCATTACctaaaa
cattgaaatatttattgtGTTATTTACCCTTTATTTTGGTTGGTACTGGA
TTAGTAGTTTTTGGTGTTTTCCAAGAAGACAGTGCTCGTATAGCATCATT
AATAGTAGGTGTCGTTGTTCTTTTCAGTGGTTTATTTGCCTGGTGTACAG
ATACAGACGTTGGTTGCTTTGTTGTATGCAGTTGTTGGTCCAACAAAGAT
CGTAAATTGAAAATCAAGAAGAATTCAAAATCAACTGGAGCAGGTATTGA
ACTTCAGAACGATATTTTTACTATACATACCAATAAAGGAGCAACTTCTC
CTCCAACGACAAACGCTTCTAAGAAAACGAAAACTGTCGTTAATAATAAC
GACGATCAAACGACAACAACCGGCGGCGTCGGTGGAAAAGACGAACATTA
CAGAGATAATAAAATGATTCAACGTGACCGACATAATAATTATGGACAAT
ATTCTTTATACCAACAAAAAGATGAAGAAGGATACGGAAACGGTACGATT
GACCGTAGTGCTCGAAAACCGAGATTCCCAACCCGCGCGCCGAGTCTCGA
CAATTACTTAAACGGCTACAAGCCGAACGGAATACATGGTCGAAATGAAA
TGCGTCTTACAGTACGAAACTTACAAAAACTTGATAAAATCAGACAACAC
CATCAAAGTGTTGATTCTGAACCACAGATGTATAACCCACCACCAAATCC
AGCAATGAACAATGAAGCTTTTGAAATAGAATTCTCTCTAAGTATACAAA
AACGTGAATCCATTAAAAATTGGATCACAGACGTACATCATAGTCGAGAG
AATGTCAATATGAATCCAGAGCATGAACAAAAACAGCAACAACAAGGTCC
ACAAACATGGATTCCCCACCAGAAAGGCTACGATTCGAATAAAATCCAAC
GTAAGCCTTTACCAAGAGAACCGGCAAATGATAGATATTCAAGTACAGCC
TCAGGTAGTGCTATAGACATTGAAGTACATTCATTACCAAGGTCTTTCGG
CAGTGATGGAAATAAGAGTCCAACTGGTACACTAGATCGTATTGATTCAC
CTGATCAAAGTTCAAATCAACAACAATTTGAGATTAGTGGTTATATAGTA
TCCGAAGATAACCAAGAACGACCACGACAACCAGCCACCATATTGGAAGC
TGTCATCAATGATCAATACGTATAATGATTGGTTTAAAACGTCTCTTGGT
GAACCAATCAGAGATTCTGTATGGCCATATGACCAATTGCGTTCTATGTC
AGCGATTACGAAGAGTTGTATTTCTCGGTACATTGATTGATAGAAATGGT
TGGTTTTAAGTCCATACTTAGATTGATAGGACATTTACatttaaaacact
ttttgggttgaaaacagacactggaTTGTTACAAATGAGATAATATCGTT
CAAAACGAATAATTATTATGAACTCTAATATAAGAAAACTCTGTGTACAT
GTTACTCCATGGACAAAGGATTCAGAATCGATATCGAACTGATAAAGTAA
AATTGTTGAAATTACTCAAGAaaatattgtcacttttttaAAAAACGAAA
TTATAAATACGGTTTGTGAAattatgatgaaatttttgacaTATATTTTA
TATCTCTACCTATACACTATTCACAATACATACCCGATTGGACCCGCCTT
ACAGGCGGAAATTTGTCGGTAAAAAGGGACGAAAAAATCGCTtggtgacg
aaatttttaccGACAAATTGCTTTTATAGTATTTCTCTTCCAAATTTCAC
TCACTCGTTTATTACAACCCTCAGTGTTGACgacaaaggaaaaaaatatt
tttttaaatacagaaCAAtctaataataatgttttttaaggaattttttt
aataattattgaTTACAGTTTTTGTTCTTAGAAAGTTGTAAATAGgtcac
tttttaaaaaagaatcaCAC
Run BLAST on NCBI

transcript from alignment at sc0000489:64539..69055+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024349 ID=TCONS_00024349|Name=TCONS_00024349|organism=Clytia hemisphaerica|type=transcript|length=4517bp|location=Sequence derived from alignment at sc0000489:64539..69055+ (Clytia hemisphaerica)
TATATACTTGAACCAAGCGTCGCATCTCGAAAAGAAGAGTAATTAAGTAG
AGAGGAAAAAGACAAAAggatggaaaagctattaaggAAAAGAAATTGAT
CCTTTAGTATCATTAAGAGAAAAAGAAacgttttgtatttttttcgatGA
CAATAGTTTTCATTTGTGATCGCTGAttgattcaaaaaaataattttttt
tttattttgcttgacGTCGTCGAAGTTTGTGTGGCTAAAAGTGCACTTCg
tattaaaaatattcaaaacaaaattttgattttgaaagacATGAGGAATT
TATCCGAATGGGATTAACTACCAAAATTGAGCATCACAGACTGTTATTGG
TCAATAATCACATAAAAACCATTATCACAAAATTATGGCATTACctaaaa
cattgaaatatttattgtGTTATTTACCCTTTATTTTGGTTGGTACTGGA
TTAGTAGTTTTTGGTGTTTTCCAAGAAGACAGTGCTCGTATAGCATCATT
AATAGTAGGTGTCGTTGTTCTTTTCAGTGGTTTATTTGCCTGGTGTACAG
ATACAGACGTTGGTTGCTTTGTTGTATGCAGTTGTTGGTCCAACAAAGAT
CGTAAATTGAAAATCAAGAAGAATTCAAAATCAACTGGAGCAGGTATTGA
ACTTCAGAACGATATTTTTACTATACATACCAATAAAGGAGCAACTTCTC
CTCCAACGACAAACGCTTCTAAGAAAACGAAAACTGTCGTTAATAATAAC
GACGATCAAACGACAACAACCGGCGGCGTCGGTGGAAAAGACGAACATTA
CAGAGATAATAAAATGATTCAACGTGACCGACATAATAATTATGGACAAT
ATTCTTTATACCAACAAAAAGATGAAGAAGGATACGGAAACGGTACGATT
GACCGTAGTGCTCGAAAACCGAGATTCCCAACCCGCGCGCCGAGTCTCGA
CAATTACTTAAACGGCTACAAGCCGAACGGAATACATGGTCGAAATGAAA
TGCGTCTTACAGTACGAAACTTACAAAAACTTGATAAAATCAGACAACAC
CATCAAAGTGTTGATTCTGAACCACAGATGTATAACCCACCACCAAATCC
AGCAATGAACAATGAAGCTTTTGAAATAGAATTCTCTCTAAGTATACAAA
AACGTGAATCCATTAAAAATTGGATCACAGACGTACATCATAGTCGAGAG
AATGTCAATATGAATCCAGAGCATGAACAAAAACAGCAACAACAAGGTCC
ACAAACATGGATTCCCCACCAGAAAGGCTACGATTCGAATAAAATCCAAC
GTAAGCCTTTACCAAGAGAACCGGCAAATGATAGATATTCAAGTACAGCC
TCAGGTAGTGCTATAGACATTGAAGTACATTCATTACCAAGGTCTTTCGG
CAGTGATGGAAATAAGAGTCCAACTGGTACACTAGATCGTATTGATTCAC
CTGATCAAAGTTCAAATCAACAACAATTTGAGATTAGTGGTTATATAGGT
AAGGATGTTATCTTTTTCCTAAAGTTTACTAGTTAAAGAATTTCTAATAA
TGGTTTATTAGCTAAACAAAAGTGTTTTAAGAGGAAATTTCTCCCAAAAA
TAGAACTCCTAAAAAACACATTCAAAAACTGTGACTAGAATCTGAATGAA
TTGACCCAACCCAAAATTTCGGTCACACCCTAAAAGATCATATTCTACCC
ACACAAAACTTGATCGAAAGAATTATCATGTTTCTTTAAAACAGTGCCAA
AACTTATTGTCTATCTCTAAGGAAAATGACAATATGCAGTAGAGATATTA
ATCTGTTTGGTcaatatatttttaagaaaacaagTTGTTAAGTACCAGAT
GATTGACTATCATCGATAATCTATTTTCTGCAACAATGTTGAATATTGGT
TATATAAGATTCAGTGGAAGTATCaattaaagaaatttaattcaaaaaaa
gatGAGCTTTCGATACAAATGCTAGTACTAGGAAGTGTTCTATAGAAAAT
GGTTTGTATAACTAAAAATAACACTTTTTGAAGTTTATCGATACATTGTC
ATGGTTTAGGTCGGGACAATCACCATTTTCATTTCtagtaaatttgataa
aaagcAATAATATAATTCTAGATAAGGAGGGAGTATTATAACATTAGTTG
AAAAACGCTGAAAAAACCTTGTCGAGATTAGGATCTGAAACGTCCAAAGA
TTTGAACCAGCAGCCTTTAAAAGCCTACTGATAAATAATTTATATTATGA
AAATTGGACTACTAATTTATGGGTTTTAAAAGAGATTTTAGGTTTTCAAA
CCGTCTGAAATAAGGCCTAGTAAATTACTTTCATTAGATTTAACAGATTA
GAAAAAACTTCTGAAACAGTGAACAGTACATTTTACTAGGAAATTTTATA
GGAAACTCGCTTTAAAAAATGACATAGTCAGGTGCTGTCTATCTAAAGCA
TGCCTTAATAAAACgataattaaaatcaaattagtTTCATAATTTCCGGT
TTTCATTAAAGATGAAAAACAtcccaaagaaaattttaaattataattat
ttttacttaATCCTTCATTATTCATCTAAATGATACATCATTTAAATTTC
ATTGCATaaaatctgattttgatcaCTGGTCGTTAACTAAAAGATAATTC
TGGAACATTGACAAATAAGGAGCGATGAAATACTGTTTCTTgcatgttcc
gttcagttcataggtAGCCAAGCCGGCTTCCTTCGGGCCCCGTAAAAACA
ATCGagagactgtctaaaagtcctagattactgtgctctccacgtaaaat
atcgagtcTATCAAACTTGAGCAAACCAATCTAAAACTCCAACGGTTTTC
TTTTCCATTGTCTCAAAGCCagccttaaaatattttcactgGTTAAGAAA
ATTCTTGTAAATGAGCTAGTTGTTTTAAGTTTGAGACTCTCTcccaaaaa
attattaatagcTTCTCCTGGAAGCTGCAGGggttgaaaatttaaatatt
tttggcttttgaaaattaaagtgaattttgactttaaaagctcataagca
gagaacaagttggtcaaatttaaaaagtgatagctcaaaagctaggatat
ctactttctaaatatcaaaactccaagcactttgggacatttgttcggcc
tcaagacgtcgggaaacgtctgaactttttagTGGGTCACCCGGAACTTA
TTTTCACAATCAGCATAGTGACAATACCAGGCAATTATACTAACAAATAA
GTTTCACTTTTCAATTTCCTGATATCTTAGAGACACTCAATTTTAAAGCG
TCTCCTAGTGCATCCTCTTTGAGATGACAGTCAATGATATCATTCAAATT
GAGTAcattataaataaaaatgacaTAACATGACAAAACATATTTGAAGA
TAATAAATGGAGGTTACGagggaagttttgaaaaaactttctttcctttc
agATATAATAAGGAAGTCAGTCATCAAAGTCAATGCCTTAATTCAGGACA
AATTTTTCGGCTCCTTTTTTAACATTCCTTGCTGATAGTCTTGAACAGAC
ACCTGGCCTCGCAATTAATCCATTTTAAGAATATTAAAATAACAATGCAA
CAAACATTGGAAACCCAAGCTGGTTAAGAGCAACACAATATCGGCGTCAG
CCATTTCCTCTAATCAAAACAACACATCTACAGTAGANTTTTTAGTATCC
GAAGATAACCAAGAACGACCACGACAACCAGCCACCATATTGGAAGCTGT
CATCAATGATCAATACGTATAATGATTGGTTTAAAACGTCTCTTGGTGAA
CCAATCAGAGATTCTGTATGGCCATATGACCAATTGCGTTCTATGTCAGC
GATTACGAAGAGTTGTATTTCTCGGTACATTGATTGATAGAAATGGTTGG
TTTTAAGTCCATACTTAGATTGATAGGACATTTACatttaaaacactttt
tgggttgaaaacagacactggaTTGTTACAAATGAGATAATATCGTTCAA
AACGAATAATTATTATGAACTCTAATATAAGAAAACTCTGTGTACATGTT
ACTCCATGGACAAAGGATTCAGAATCGATATCGAACTGATAAAGTAAAAT
TGTTGAAATTACTCAAGAaaatattgtcacttttttaAAAAACGAAATTA
TAAATACGGTTTGTGAAattatgatgaaatttttgacaTATATTTTATAT
CTCTACCTATACACTATTCACAATACATACCCGATTGGACCCGCCTTACA
GGCGGAAATTTGTCGGTAAAAAGGGACGAAAAAATCGCTtggtgacgaaa
tttttaccGACAAATTGCTTTTATAGTATTTCTCTTCCAAATTTCACTCA
CTCGTTTATTACAACCCTCAGTGTTGACgacaaaggaaaaaaatattttt
ttaaatacagaaCAAtctaataataatgttttttaaggaatttttttaat
aattattgaTTACAGTTTTTGTTCTTAGAAAGTTGTAAATAGgtcacttt
ttaaaaaagaatcaCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013659XLOC_013659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024349-exon-sc0000489-1491911889:64539..66036TCONS_00024349-exon-sc0000489-1491911889:64539..66036Clytia hemisphaericaexon
TCONS_00024349-exon-sc0000489-1510915933:64539..66036TCONS_00024349-exon-sc0000489-1510915933:64539..66036Clytia hemisphaericaexon
TCONS_00024349-exon-sc0000489-1575043694:64539..66036TCONS_00024349-exon-sc0000489-1575043694:64539..66036Clytia hemisphaericaexon
TCONS_00024349-exon-sc0000489-1491911889:68234..69055TCONS_00024349-exon-sc0000489-1491911889:68234..69055Clytia hemisphaericaexon
TCONS_00024349-exon-sc0000489-1510915933:68234..69055TCONS_00024349-exon-sc0000489-1510915933:68234..69055Clytia hemisphaericaexon
TCONS_00024349-exon-sc0000489-1575043694:68234..69055TCONS_00024349-exon-sc0000489-1575043694:68234..69055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000489supercontigsc0000489:64539..69055 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112838	0.0655545	0.0570863	0.0744667	2.53589	0.935149	3.65144	3.98323	3.51842	3.59226	2.73772	4.50386	10.7244	5.82414	12.5279	12.3477	1.78974	4.42254	0	0.278902	0.252806	0.177363	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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