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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024354 ID=TCONS_00024354|Name=TCONS_00024354|organism=Clytia hemisphaerica|type=transcript|length=2494bpRun BLAST on NCBI protein sequence of TCONS_00024354-protein >TCONS_00024354-protein ID=TCONS_00024354-protein|Name=TCONS_00024354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp MAEKSSAGKAQNEEEKKINFSVLKKHDPNISKIIDTAKSVAHYQFNSSSNRun BLAST on NCBI transcript from alignment at sc0000489:153561..164967+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024354 ID=TCONS_00024354|Name=TCONS_00024354|organism=Clytia hemisphaerica|type=transcript|length=11407bp|location=Sequence derived from alignment at sc0000489:153561..164967+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000489:153561..164967+ >TCONS_00024354 ID=TCONS_00024354|Name=TCONS_00024354|organism=Clytia hemisphaerica|type=CDS|length=19332bp|location=Sequence derived from alignment at sc0000489:153561..164967+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024354 vs. Swiss-Prot (Human)
Match: DCP1B (mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 2.858e-30 Identity = 56/118 (47.46%), Postives = 79/118 (66.95%), Query Frame = 2
Query: 83 KKINFSVLKKHDPNISKIIDTAKSVAHYQFNSSSNVWEKTEVEGSLFLYSRDISPIVIIFIMNRLSKENTRLPLTADMEIKVQQPFLLCKLKTNEIIGIWFYDPDECQRFGDLLIKLS 436
+ I+ + L++HDP I++I+D A VA Y F +N WEKT+VEG+LF+Y+R SP IMNRLS EN P+T D++ ++Q PFLL + I GIWFYD +ECQR +L+ L+
Sbjct: 14 RDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLT 131 The following BLAST results are available for this feature:
BLAST of TCONS_00024354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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