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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024366 ID=TCONS_00024366|Name=TCONS_00024366|organism=Clytia hemisphaerica|type=transcript|length=1217bpRun BLAST on NCBI protein sequence of TCONS_00024366-protein >TCONS_00024366-protein ID=TCONS_00024366-protein|Name=TCONS_00024366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp MATLICYIATILLAILVASSFSLPHDEKVEEEVIPYPNPEEGNKFEGDIIRun BLAST on NCBI transcript from alignment at sc0000489:99511..116710- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024366 ID=TCONS_00024366|Name=TCONS_00024366|organism=Clytia hemisphaerica|type=transcript|length=17200bp|location=Sequence derived from alignment at sc0000489:99511..116710- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000489:99511..116710- >TCONS_00024366 ID=TCONS_00024366|Name=TCONS_00024366|organism=Clytia hemisphaerica|type=CDS|length=7464bp|location=Sequence derived from alignment at sc0000489:99511..116710- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024366 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2) HSP 1 Score: 152.91 bits (385), Expect = 3.550e-40 Identity = 78/187 (41.71%), Postives = 106/187 (56.68%), Query Frame = 1
Query: 325 AIPIPYYINPALGYKAKGAIKAAVREYIKHTCIKFQEVDKRPLGKAHLHIVKKDGCWSHVGMYNNHEGQELSIGKGCEYKGVVTHEFGHALGLFHEQSRPDRDNYVEIILNNITPGRAGNFKRYSTAMINSLGFKYDYESIMHYTNNAFAKRQGLITIRTKNPAYQNKIGNRHGLSKGDIAQLNKMY 885
PIPY + LG AKGAI A + +C+ F+ + +++ + DGCWS VG + H GQ +SIG+GC YK ++ HE HALG +HEQSR DRD+YV I + I G NF Y ++I L YDYES+MHY +F K + TI K P + + IG R S D+ +LN+MY
Sbjct: 76 TFPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGE---SSYIIFQQFDGCWSEVG--DQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMY 257 The following BLAST results are available for this feature:
BLAST of TCONS_00024366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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