TCONS_00024376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024376
Unique NameTCONS_00024376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024376 ID=TCONS_00024376|Name=TCONS_00024376|organism=Clytia hemisphaerica|type=transcript|length=461bp
ATTCTTTATCCTTTAACAAATCATCTGGCCCTTATAGCATTTCCCCAAAA
ATTCTTCGTCTTCTAAAGTTTGACCTCTCTGGAcccctttcttttctttt
aaccTTTCATTTGAATCTGGTTGTTTTCGTCCCTCAATGCTTAAACTCTC
GAAAGTTATTcccgttttcaaaaacaaaggctcTCCACTTGAAATATCCA
ATTATCGCCCTATATCTCTTCTTTCCAACATAGAGAAAATTCTTGAGAAA
CTTATGTACTCTCGTCTTATTACTTTCCTAGATTCTCATCGAGTATTTTT
TGAGCGCCAGTTTGGTTTTCGTAGATCTCACTCAACCATCCATACCTTAC
TTAATATTGTTGAACGTATTGAGAAATCTCTTGATGATGGTAACTTTGTG
TGtggtgtttttgttgatttgcaaAAGGCTTTTGACACTGTTGATCATTA
TATTCTAATTT
Run BLAST on NCBI

protein sequence of TCONS_00024376-protein

>TCONS_00024376-protein ID=TCONS_00024376-protein|Name=TCONS_00024376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MLKLSKVIPVFKNKGSPLEISNYRPISLLSNIEKILEKLMYSRLITFLDS
HRVFFERQFGFRRSHSTIHTLLNIVERIEKSLDDGNFVCGVFVDLQKAFD
TVDHYILI
Run BLAST on NCBI

transcript from alignment at sc0000489:18821..19281

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024376 ID=TCONS_00024376|Name=TCONS_00024376|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at sc0000489:18821..19281 (Clytia hemisphaerica)
AAATTAGAATATAATGATCAACAGTGTCAAAAGCCTTttgcaaatcaaca
aaaacaccaCACACAAAGTTACCATCATCAAGAGATTTCTCAATACGTTC
AACAATATTAAGTAAGGTATGGATGGTTGAGTGAGATCTACGAAAACCAA
ACTGGCGCTCAAAAAATACTCGATGAGAATCTAGGAAAGTAATAAGACGA
GAGTACATAAGTTTCTCAAGAATTTTCTCTATGTTGGAAAGAAGAGATAT
AGGGCGATAATTGGATATTTCAAGTGGAgagcctttgtttttgaaaacgg
gAATAACTTTCGAGAGTTTAAGCATTGAGGGACGAAAACAACCAGATTCA
AATGAAAggttaaaagaaaagaaaggggTCCAGAGAGGTCAAACTTTAGA
AGACGAAGAATTTTTGGGGAAATGCTATAAGGGCCAGATGATTTGTTAAA
GGATAAAGAAT

Coding sequence (CDS) from alignment at sc0000489:18821..19281

>TCONS_00024376 ID=TCONS_00024376|Name=TCONS_00024376|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000489:18821..19281 (Clytia hemisphaerica)
AATTAGAATATAATGATCAACAGTGTCAAAAGCCTTttgcaaatcaacaa
aaacaccaCACACAAAGTTACCATCATCAAGAGATTTCTCAATACGTTCA
ACAATATTAAGTAAGGTATGGATGGTTGAGTGAGATCTACGAAAACCAAA
CTGGCGCTCAAAAAATACTCGATGAGAATCTAGGAAAGTAATAAGACGAG
AGTACATAAGTTTCTCAAGAATTTTCTCTATGTTGGAAAGAAGAGATATA
GGGCGATAATTGGATATTTCAAGTGGAgagcctttgtttttgaaaacggg
AATAACTTTCGAGAGTTTAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013678XLOC_013678Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024376-proteinTCONS_00024376-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024376-exon-sc0000489-1491911889:18821..19281TCONS_00024376-exon-sc0000489-1491911889:18821..19281Clytia hemisphaericaexon
TCONS_00024376-exon-sc0000489-1510915933:18821..19281TCONS_00024376-exon-sc0000489-1510915933:18821..19281Clytia hemisphaericaexon
TCONS_00024376-exon-sc0000489-1575043694:18821..19281TCONS_00024376-exon-sc0000489-1575043694:18821..19281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000489supercontigsc0000489:18821..19281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.86798	2.77745	5.44491	2.96294	3.42609	2.10499	4.6525	4.04031	1.03604	0.495156	2.98779	1.54383	1.22338	2.04197	0.624635	0.508537	0	0.360972	0.400064	0.357922	1.54216	2.02866	0.447445	0.644478	5.02722	4.48048	1.60548	1.87878	1.11555	1.06876
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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