|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024397 ID=TCONS_00024397|Name=TCONS_00024397|organism=Clytia hemisphaerica|type=transcript|length=1969bpRun BLAST on NCBI protein sequence of TCONS_00024397-protein >TCONS_00024397-protein ID=TCONS_00024397-protein|Name=TCONS_00024397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp MEVENNVSSHITAKFGHISKFLNTNGPMQHPEFEAAPILLDFIRENVNILRun BLAST on NCBI transcript from alignment at sc0000491:24992..51492- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024397 ID=TCONS_00024397|Name=TCONS_00024397|organism=Clytia hemisphaerica|type=transcript|length=26501bp|location=Sequence derived from alignment at sc0000491:24992..51492- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000491:24992..51492- >TCONS_00024397 ID=TCONS_00024397|Name=TCONS_00024397|organism=Clytia hemisphaerica|type=CDS|length=15540bp|location=Sequence derived from alignment at sc0000491:24992..51492- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024397 vs. Swiss-Prot (Human)
Match: UBA3 (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2) HSP 1 Score: 498.819 bits (1283), Expect = 2.629e-170 Identity = 227/348 (65.23%), Postives = 280/348 (80.46%), Query Frame = 3
Query: 96 AKFGHISKFLNTNGPMQHPEFEAAPILLDFIRENVNILVIGAGGLGCELLKDLALSGFQNISVIDMDTIDLSNLNRQFLFRAKDIGKPKAEVAAAFINKRIPSCNVTPYYNKIQDFDEDFYRNFQVIVCGLDSVVARRWMNGMVHTLLNYEEDGSITPGTLIPIVDGGTEGFKGNARVIYPGRTACIECNLDLYPKQVNFPLCTLAETPRLPEHCIEYIKIVVWPKEFPFGGGVNIDGDNPDHIAWICQRASERAQQYGIEGINYRLTQGVIKNIIPAVASTNAVIAAMCVTEVFKAITCCYKTMENYTVFNDSQGVYTYTFEAEKKEDCPVCSRKPIERKVEIHFNP 1139
++ H+ KFL +GP HP+FE + L F+ + +LVIGAGGLGCELLK+LALSGF+ I VIDMDTID+SNLNRQFLFR KDIG+PKAEVAA F+N R+P+CNV P++NKIQDF++ FYR F +IVCGLDS++ARRW+NGM+ +LLNYE DG + P +++P++DGGTEGFKGNARVI PG TACIEC L+LYP QVNFP+CT+A PRLPEHCIEY++++ WPKE PFG GV +DGD+P+HI WI Q++ ERA QY I G+ YRLTQGV+K IIPAVASTNAVIAA+C TEVFK T Y + NY VFND G+YTYTFEAE+KE+CP CS+ P I F+P
Sbjct: 36 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLP----QNIQFSP 378 The following BLAST results are available for this feature:
BLAST of TCONS_00024397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.