TCONS_00024411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024411
Unique NameTCONS_00024411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024411 ID=TCONS_00024411|Name=TCONS_00024411|organism=Clytia hemisphaerica|type=transcript|length=615bp
AGGTTTGTGGTAACGTAGCTGGGTTGTGTTCGTGGACGAAAGCAATGGCC
AAATTTTTCTCCGTCAACAAAGAAGTCCTTCCTCTTAAAGCAAACCTTTC
AATTCAAGAGGCAAAGTTAGAACTGGCGATGAGTGATTTGCAAACAGCTC
AACAACAGTTGGACGAAAAACAGAAAGAATTAGACGCCGCACAGGCAGAA
TATGAAAGTGCCATGCGCGAAAAACAGGTAAGAAACCCAGGGTAGATTCT
GTTGCGAATGTTTTTACTCTTAAAACTGACTTTCTATGCATCAAGGTGTT
TGAGTGTTATCAAGAAATATCACAAAATATTGACTACGAGTATACTCGTG
GAAGAGGGCTCAAAATACAGATAGAACTTTGAcgtgttaaaggttttatt
tttacataagaaaGCCTAAGCGGCGTAAAGACCCATAGCAGTGTTAACAT
TTGCAATACAAATTTACAGgagtaaatttttttgatgtatTGACTCGAGT
CGCGCGagtaataaaaatttaatttaattactttaatattttgagagaaa
gaaagatttgaccatATAAGTTGGAGGtattgattatgtgtgttttttTC
TTACGCATGTGCACA
Run BLAST on NCBI

transcript from alignment at sc0000491:91036..91996-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024411 ID=TCONS_00024411|Name=TCONS_00024411|organism=Clytia hemisphaerica|type=transcript|length=961bp|location=Sequence derived from alignment at sc0000491:91036..91996- (Clytia hemisphaerica)
AGGTTTGTGGTAACGTAGCTGGGTTGTGTTCGTGGACGAAAGCAATGGCC
AAATTTTTCTCCGTCAACAAAGAAGTCCTTCCTCTTAAAGTAAACTTCCC
TTTATTCTGGATATCAAAAATTTGTTATGTCGTGACCAACTCATGACTGA
TAACTGATCATCATAGACAACTGAGATTTTACACGTTTCTTTTATAAAAG
CATCCAACATTTTTGAAGCCTTCGGATGTTCTTAACATTTTGAGATTGAC
GCCTAAAAGTTTTCTTAACATGTTCTTATTTTCACCAAATCGGGAGTTTT
TTGTCCATTTTCCTTATAAATCGGGTGTTTTAGAGTCCACAAAGCCTTAG
AATATTCTTAACTTGCTCTGAACACTCTGGTCATCGAAGTCTTATGTTCT
TATATAGTTTTTTTCTTATAATTTTCTACTTTTAGGCAAACCTTTCAATT
CAAGAGGCAAAGTTAGAACTGGCGATGAGTGATTTGCAAACAGCTCAACA
ACAGTTGGACGAAAAACAGAAAGAATTAGACGCCGCACAGGCAGAATATG
AAAGTGCCATGCGCGAAAAACAGGTAAGAAACCCAGGGTAGATTCTGTTG
CGAATGTTTTTACTCTTAAAACTGACTTTCTATGCATCAAGGTGTTTGAG
TGTTATCAAGAAATATCACAAAATATTGACTACGAGTATACTCGTGGAAG
AGGGCTCAAAATACAGATAGAACTTTGACGTGTTAAAGGTTTTATTTTTA
CATAAGAAAGCCTAAGCGGCGTAAAGACCCATAGCAGTGTTAACATTTGC
AATACAAATTTACAGGAGTAAATTTTTTTGATGTATTGACTCGAGTCGCG
CGAGTAATAAAAATTTAATTTAATTACTTTAATATTTTGAGAGAAAGAAA
GATTTGACCATATAAGTTGGAGGTATTGATTATGTGTGTTTTTTTCTTAC
GCATGTGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013699XLOC_013699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024411-exon-sc0000491-1575043694:91908..91996TCONS_00024411-exon-sc0000491-1575043694:91908..91996Clytia hemisphaericaexon
TCONS_00024411-exon-sc0000491-1575043694:91036..91561TCONS_00024411-exon-sc0000491-1575043694:91036..91561Clytia hemisphaericaexon
TCONS_00024411-exon-sc0000491-1510915933:91908..91996TCONS_00024411-exon-sc0000491-1510915933:91908..91996Clytia hemisphaericaexon
TCONS_00024411-exon-sc0000491-1510915933:91036..91561TCONS_00024411-exon-sc0000491-1510915933:91036..91561Clytia hemisphaericaexon
TCONS_00024411-exon-sc0000491-1491911889:91908..91996TCONS_00024411-exon-sc0000491-1491911889:91908..91996Clytia hemisphaericaexon
TCONS_00024411-exon-sc0000491-1491911889:91036..91561TCONS_00024411-exon-sc0000491-1491911889:91036..91561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000491supercontigsc0000491:91036..91996 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0944232	0.127819	0.546087	0.622647	0.648129	0.27936	0.0561727	0.105176	0.273086	0.193489	0.386774	0.674083	0.222044	0.241417	0.159427	0.333348	0.138626	0.308937	0.58907	0.583221	0.820496	0.519961	0.121671	0.34617	0	0.083732	0.375696	0.212783	0.204017	0.463619
Blast
[Close]
BLAST of TCONS_00024411 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 5.171e-30
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 3 
Query:    3 VCGNVAGLCSWTKAMAKFFSVNKEVLPLKANLSIQEAKLELAMSDLQTAQQQLDEKQKELDAAQAEYESAMREKQV 230
            VCGNVAGLCSWTKAMA FFS+NKEVLPLKANL +QE +  LAM DLQ AQ +LD+KQ ELD  QAEYE AM EKQ 
Sbjct: 3399 VCGNVAGLCSWTKAMASFFSINKEVLPLKANLVVQENRHLLAMQDLQKAQAELDDKQAELDVVQAEYEQAMTEKQT 3474
The following BLAST results are available for this feature:
BLAST of TCONS_00024411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH55.171e-3075.00Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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