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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024421 ID=TCONS_00024421|Name=TCONS_00024421|organism=Clytia hemisphaerica|type=transcript|length=774bp
caaaaagaatttcaaaaagcttCTTAAACAAAAGATCGAGGAGAACCCAC
CACAGGATTCAAACCTTCGATGGATCTTCGGATTGGAGCTTTCAGAGTTG
GGAGAACAACTAGAACATTGGTTTTATAATCAACTTTCACCGTTAAAAGA
TGACATTCTCCAGGACACAGTTGTCCTTTCGTCAgccaattttttaacaa
atgttCGAAACAAGATGCATAAAGAAGCAGATTTCTTAATCATTTCCTGG
CAAAGAAAACTCATCATTTCCGTAGAGATGAAACGCGAACTCGCCAACGA
TCGAGTTTTCGACCAATTGGATTCGAACCATCGATTACTCGAGGAAAGAT
TAGGTGACCAACTTCAACCTGGATGGACATTCTTCCCCGTTGTCTGTGTC
CAAAACAGTTCCATCTCAATCGCTAGTAATCATTTCATCACCATGGAGAC
TGTAATCAAACCATGGTTGGCGAGCATCCTCGATAATTACCCAATCGTTC
AAATCACTCAAAAACCGACTCCACTCGATCAAGTCCAAAAGCTGTTGAAG
ATTATCGTCTTTTCGATTCACGTTTCCAAGAAGGACCTCGTTGCACCCAT
AACCAGCTCAAACTGGGTAGAGTACATCCAAGACGCCATCGAAAATGTTT
CAACTAGTGACAACATTTTGTTTTATTCCAACCAACAGATGGCAGCGTTG
AACAATAATGATCCACGTTATAATAGACTGATAATTTCTGGCCCATTTGG
TGTGGGTAAAAGTATATTGCTGAG Run BLAST on NCBI protein sequence of TCONS_00024421-protein >TCONS_00024421-protein ID=TCONS_00024421-protein|Name=TCONS_00024421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
KKNFKKLLKQKIEENPPQDSNLRWIFGLELSELGEQLEHWFYNQLSPLKD
DILQDTVVLSSANFLTNVRNKMHKEADFLIISWQRKLIISVEMKRELAND
RVFDQLDSNHRLLEERLGDQLQPGWTFFPVVCVQNSSISIASNHFITMET
VIKPWLASILDNYPIVQITQKPTPLDQVQKLLKIIVFSIHVSKKDLVAPI
TSSNWVEYIQDAIENVSTSDNILFYSNQQMAALNNNDPRYNRLIISGPFG
VGKSILL Run BLAST on NCBI transcript from alignment at sc0000491:34997..35770 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024421 ID=TCONS_00024421|Name=TCONS_00024421|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at sc0000491:34997..35770 (Clytia hemisphaerica)
CTCAGCAATATACTTTTACCCACACCAAATGGGCCAGAAATTATCAGTCT
ATTATAACGTGGATCATTATTGTTCAACGCTGCCATCTGTTGGTTGGAAT
AAAACAAAATGTTGTCACTAGTTGAAACATTTTCGATGGCGTCTTGGATG
TACTCTACCCAGTTTGAGCTGGTTATGGGTGCAACGAGGTCCTTCTTGGA
AACGTGAATCGAAAAGACGATAATCTTCAACAGCTTTTGGACTTGATCGA
GTGGAGTCGGTTTTTGAGTGATTTGAACGATTGGGTAATTATCGAGGATG
CTCGCCAACCATGGTTTGATTACAGTCTCCATGGTGATGAAATGATTACT
AGCGATTGAGATGGAACTGTTTTGGACACAGACAACGGGGAAGAATGTCC
ATCCAGGTTGAAGTTGGTCACCTAATCTTTCCTCGAGTAATCGATGGTTC
GAATCCAATTGGTCGAAAACTCGATCGTTGGCGAGTTCGCGTTTCATCTC
TACGGAAATGATGAGTTTTCTTTGCCAGGAAATGATTAAGAAATCTGCTT
CTTTATGCATCTTGTTTCGaacatttgttaaaaaattggcTGACGAAAGG
ACAACTGTGTCCTGGAGAATGTCATCTTTTAACGGTGAAAGTTGATTATA
AAACCAATGTTCTAGTTGTTCTCCCAACTCTGAAAGCTCCAATCCGAAGA
TCCATCGAAGGTTTGAATCCTGTGGTGGGTTCTCCTCGATCTTTTGTTTA
AGaagctttttgaaattctttttg Coding sequence (CDS) from alignment at sc0000491:34997..35770 >TCONS_00024421 ID=TCONS_00024421|Name=TCONS_00024421|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at sc0000491:34997..35770 (Clytia hemisphaerica)
CAGCAATATACTTTTACCCACACCAAATGGGCCAGAAATTATCAGTCTAT
TATAACGTGGATCATTATTGTTCAACGCTGCCATCTGTTGGTTGGAATAA
AACAAAATGTTGTCACTAGTTGAAACATTTTCGATGGCGTCTTGGATGTA
CTCTACCCAGTTTGAGCTGGTTATGGGTGCAACGAGGTCCTTCTTGGAAA
CGTGAATCGAAAAGACGATAATCTTCAACAGCTTTTGGACTTGATCGAGT
GGAGTCGGTTTTTGAGTGATTTGAACGATTGGGTAATTATCGAGGATGCT
CGCCAACCATGGTTTGATTACAGTCTCCATGGTGATGAAATGATTACTAG
CGATTGAGATGGAACTGTTTTGGACACAGACAACGGGGAAGAATGTCCAT
CCAGGTTGAAGTTGGTCACCTAATCTTTCCTCGAGTAATCGATGGTTCGA
ATCCAATTGGTCGAAAACTCGATCGTTGGCGAGTTCGCGTTTCATCTCTA
CGGAAATGATGAGTTTTCTTTGCCAGGAAATGATTAAGAAATCTGCTTCT
TTATGCATCTTGTTTCGaacatttgttaaaaaattggcTGACGAAAGGAC
AACTGTGTCCTGGAGAATGTCATCTTTTAACGGTGAAAGTTGATTATAAA
ACCAATGTTCTAGTTGTTCTCCCAACTCTGAAAGCTCCAATCCGAAGATC
CATCGAAGGTTTGAATCCTGTGGTGGGTTCTCCTCGATCTTTTGTTTAAG
aagctttttgaaattcttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024421-exon-sc0000491-1491911889:34997..35770 | TCONS_00024421-exon-sc0000491-1491911889:34997..35770 | Clytia hemisphaerica | exon |
| TCONS_00024421-exon-sc0000491-1510915933:34997..35770 | TCONS_00024421-exon-sc0000491-1510915933:34997..35770 | Clytia hemisphaerica | exon |
| TCONS_00024421-exon-sc0000491-1575043694:34997..35770 | TCONS_00024421-exon-sc0000491-1575043694:34997..35770 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000491 | supercontig | sc0000491:34997..35770 . |
Blast
The following BLAST results are available for this feature:
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