|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024458 ID=TCONS_00024458|Name=TCONS_00024458|organism=Clytia hemisphaerica|type=transcript|length=3410bpRun BLAST on NCBI protein sequence of TCONS_00024458-protein >TCONS_00024458-protein ID=TCONS_00024458-protein|Name=TCONS_00024458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp EKEIETSEFHPSSSGCEVENLTSEQVYTYEYGKEEELQEGGPFSEQGSESRun BLAST on NCBI transcript from alignment at sc0000499:191195..203342+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024458 ID=TCONS_00024458|Name=TCONS_00024458|organism=Clytia hemisphaerica|type=transcript|length=12148bp|location=Sequence derived from alignment at sc0000499:191195..203342+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000499:191195..203342+ >TCONS_00024458 ID=TCONS_00024458|Name=TCONS_00024458|organism=Clytia hemisphaerica|type=CDS|length=34515bp|location=Sequence derived from alignment at sc0000499:191195..203342+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024458 vs. Swiss-Prot (Human)
Match: TRAK1 (Trafficking kinesin-binding protein 1 OS=Homo sapiens GN=TRAK1 PE=1 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.980e-47 Identity = 131/359 (36.49%), Postives = 204/359 (56.82%), Query Frame = 1
Query: 205 FDITNEQALATLKYFSSSSDRTTIMTKTHGADLDIISQLLLEKEKDLDMAAKIGQSLLQRNKSLLVKIEHMEDYLVKSKDNEMQLEHDLRNKNEFARMYFEDDQQS-----------YNSSSSKDCDDEEIRSLTNRCRALEKENQNLFTEALNIREYTDEFEEKEEGLVLDCIEQLSSAKSQITQLTDEIAQKFEDNVQQQEEITQLINMVVELQKKQKQLCVDNDDLQGQLIEAENDKDSLKQQLAIMRSKFEETYEMLQENQQEIKTLKSRFDMTTSSNPSDWLNDSGNSLALQDSLANEIEESVRRDLIYTQDRRK---QNKKVLENVRYLNVRGAPSSISTSGRTSPVSNWSLA 1239
D+T EQ TLKYF ++R MTKT+ D+D +++LL EKE+DL++AA+IGQSLL++NK+L + E +E+ + ++ QL H+L K+E + Y ++S N SSS + + SL + + LE+EN L +EA ++ T +EEKE+ LV DC+++L A QI +++E+A+K ED +QQEEIT L++ +V+LQKK K V+N++L L A++ + L +L + K+ E EML E Q+E+K L+++ T+S L L DSLA EIE ++R++L + K+V E VR +N S++ S P SN S A
Sbjct: 81 IDLTTEQIEETLKYFLLCAERVGQMTKTYN-DIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLG-----LFPMDSLAAEIEGTMRKELQLEEAESPDITHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSA 433 The following BLAST results are available for this feature:
BLAST of TCONS_00024458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.