TCONS_00024459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024459
Unique NameTCONS_00024459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024459 ID=TCONS_00024459|Name=TCONS_00024459|organism=Clytia hemisphaerica|type=transcript|length=3344bp
aaaagaaatagaaacgAGCGAATTCCATCCATCTAGTAGTGGCTGCGAAG
TAGAGAATCTCACCTCAGAACAAGTTTATACATATGAATATGGCAAAGAA
GAAGAACTCCAGGAAGGAGGGCCATTCAGTGAGCAAGGATCAGAGAGTGG
TGTGGAACCGGATTACACAGAATGGGTGTTCGATGAGAATGCAATCGATA
AATTTGATATCACGAATGAGCAAGCGTTGGCCACCTTGAAATCATCTCAC
AACTTCTGCTGGAGAAAGAAAAGGATTTGGACATGGCTGCAAAAATTGGA
CAGTCTTTATTGCAACGAAACAAATCTCTCTTGGTGAAAATCGAACATAT
GGAGGACTACCTCGTCAAAAGCAAAGATAACGAAATGCAACTAGAGCATG
ACTTACGGAACAAGAATGAATTTGCTCGAATGTATTTTGAAGATGATCAA
CAAAGTTACAATTCAAGCAGTTCCAAAGATTGTGACGACGAAGAAATCCG
TTCTTTGACCAATCGTTGTCGTGCTTTGGAAAAAGAGAATCAAAACCTGT
TTACTGAGGCGTTGAACATTCGAGAATACACAGATGAATTTGAAGAGAAG
GAAGAAGGGCTGGTACTGGATTGTATCGAACAATTATCGTCGGCGAAATC
ACAGATCACGCAATTGACGGATGAGATAGCGCAGAAGTTTGAAGATAACG
TCCAGCAACAAGAAGAAATCACTCAGTTGATCAACATGGTCGTCGAACTa
cagaagaaacaaaaacagCTGTGTGTGGACAATGACGATTTACAAGGACA
ATTGATCGAAGCTGAAAATGATAAAGACAGTCTGAAGCAACAGCTGGCCA
TCATGCGTTCGAAATTCGAAGAAACTTATGAAATGTTACAAGAGAACCAA
CAAGAGATTAAAACACTGAAGTCACGGTTTGAtATGACTACATCATCAAA
TCCATCTGATTGGTTGAACGATTCTGGAAATTCACTGGCTCTCCAGGACT
CGCTAGCCAATGAGATTGAAGAATCTGTTCGTCGTGATCTAATCTATACT
CAAGACCGAAGgaaACAAAACAAGAAAGTGTTGGAGAACGTCCGATATTT
GAATGTTCGGGGTGCACCGAGTTCCATTTCAACATCCGGCCGAACATCAC
CGGTGTCCAATTGGAGTCTGGCGTCCGATGAACGTTCAGAAACTATGTCC
ACCGTCTCCAATATTGATTGTGAAAGTATGAAATCgaagaaaaatgtgaa
aaaattacaaatcgtTAAACCCATGGAAGGGTCAGACACGTTAAGTAAAT
GGCATAATCTGGCCTCCCAAAACGTGAAGGACGGTTTCAATGTCTCTGAT
GTCTCACCGACGAAGTCTGATGCACCACAAGCGATTGTTGATAGTGACAC
TTCGACAGCTGAAGAGAGTGACCACGATAACAATGGTCAAACTGCACACA
ACATTGACCCTTCAGCTCCAACTGCCCACAAGAAAACGCCGACTATTCGG
AAACCGTTAAAACCTAAGAAACAGAGTACGCCGACCAGTGTAAAAAATAG
CGGCGGCGGCAATTCATTTTTGAAAGGATTAGAGACACCTGACACAACCA
AACGAACCATATTGACGCGAAATTCGTCAGCGATGAACTCCTTACGTCAA
GGACGGCGTATGTTACGTAGCAAAGATAACAATGGGCGATCCAAAGCGGA
AGTTATTGATATGATCGCAAATGCAATGAATAAAGCCAACGTAGAAGCGC
AAGCGGGGCAACGTATTTTGTCTTCCATCACAAACAGTACGTCGTCAACT
CCACGCCGTGAAAGCATACGTCAGCGCGCGGAAACGTTGAGTAAATCACC
CGATATTCAAGAAATGCCGACCGTGacaaaagttttagaaaaagtcGCAC
ACAATGTTGAAGCCCTCGGTTTTTCTTCCTCTGACTTGGAATCAGAAATC
GATGACGCCCCACCACGCCCGTTTGATACTTTACCACCTCAGGGTGTTCA
GACTAGTTTTAATTCCAATACGTCGATTGTTCAAACTGAACTGAACAGTG
TAACTGGACCTTTAGGTTTATTAAGCAGAGCGGATTTGAATGAACCTAAC
CCGATGTTGAAAAACAGACTACTGCGCATGTCAAGTATCGATANCCAACG
ACCACAAATACGAAGTTCGGTTCTGCGACAGACATTGGACAAGAAACTCC
TCCACCCCAAAAGCCACAAACTTCCAAATCAGTAGAAACAGGCTTAGACA
GTGTGAGAACTCCTGATCAAAACACGAGTGGAGGAGCATTCGGGTTTTTC
TCCTCCTTCCTTGGGAAGCTTTCATGATTGGATGTTCGTTCAGTTTTGTT
ATTTACTGTCATTTGAATGAAATTGAGAAAATCAACTTCTGTCAAGTGCC
ATttgaatagatcttatcggagtttttgatttttctaaaaacgcggtgca
ttgtgggattgtttcgggaatATTActatagaattccctcgaggaattcc
taagagatttctattgaaatactcccgaaacaatcccacaacgcatcgct
tttttagaaaaatcaaaaactccgataagatctattaaaGGGATATAACA
GTACttgcaaaatttgtaaacaaactgtatgcaacgggtacaaaatcaaa
acaaatgtcacgtgtcaaaataaaaaatcaaaccaaatatgactaatttt
gattgttcaattgttttacaagttggTTTTGGACAcgttttttaattgtt
ctctttaatgacacctggttcgcgcaatgtttacattttactacttttat
gtccctttaaagatgCAACCGGACCGTCGGGTACATACATTTGTAATTGT
AAATATGTATTCCAATTCGAAGAGAAATCGTTCGACATGAGTATTCCTTC
CTTGAAAATTCGTTacgttttttgaaatcgtgtttttcgcaatttttgag
ACAGGTTAAAAACCTATTTCATCTTGTATGAAGCATGATCAAGTAATTTT
GAAATAGACCTTGCTGAATTCGAAATTTCTCTTGGTGTTGTAGGGACTTA
CTCTTTACCGTTTTGTAACTTTATTTTTCGTTTGAAAACTCGACAATTTT
acagtttaaaaaataaaatgagaattatatttattatatCAAGGAGactt
ttttcgatatttttttgtgattagaatttttatattttaagatTTGTCAG
CAATGTATGATTTTGAAGATTGGTCTTGNCCTTTTATTTTAGAGAAGTCG
ATTTTATGacagggttcagacagaccttcgaaaataaaattccctgagtt
tccctgaattttaatcaattttcaaaggttttttccctgagaaa
Run BLAST on NCBI

transcript from alignment at sc0000499:191197..203342+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024459 ID=TCONS_00024459|Name=TCONS_00024459|organism=Clytia hemisphaerica|type=transcript|length=12146bp|location=Sequence derived from alignment at sc0000499:191197..203342+ (Clytia hemisphaerica)
aaaagaaatagaaacgAGCGAATTCCATCCATCTAGTAGTGGCTGCGAAG
TAGAGAATCTCACCTCAGAACAAGTTTATACATATGAATATGGCAAAGAA
GAAGAACTCCAGGAAGGAGGGCCATTCAGTGAGCAAGGATCAGAGAGTGG
TGTGGAACCGGATTACACAGAATGGGTGTTCGATGAGAATGCAATCGATA
AATTTGATATCACGAATGAGCAAGCGTTGGCCACCTTGAAATATTTCTGT
AAGTCTTTACTACACAAATTGTTCAAGTAGCTGTCCCCcatggagttttt
tgaaaatttactttgaatttgatttgACGAAAACTATTAGCAAAGTTGAA
GAGTTAGAGAGAATCTAACATTTTGGCTCGTTTGACcaataatatttgca
aaatactgaGTTTCAGAGGAAGCGTAATAAATTTCGTATTTGAAGTGTGT
TTTCAAAGTATCCATGTCATTGTAttatttacctgttttttacactttcc
gaaaagtgaattttgagtttaaaagctcataactagggaacttgtgcgtc
aaatttaaaaagtaatggctcGGATTTTAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTAGTTTCTTTTCACTCAGTCCAGTGTTAAACATCGGATGGC
TTTCCGACTCTTGGAAGCCAAAAATATCGATTTACGACTTCGTCTGGATA
AGCATATAATTTCGTTTTGTCTAAAATTGAAATCTTACTTTGATCTATtt
gaatttcaagaatttttcctCCTTCCCCTTATTTTTATCTCCCTCGTGCA
TTTTAAGATTTCTCTTCAAACCTTTTATCTGGATACCGAGATTAAATGCA
AAAACGTTATGTTTATATATAGATAGCGCTGAACTGGATATTAACATTTT
TGAAGAATAATTTACGTTAAGAGATTATTCTAATAGCCATACAAAGTCGA
TAAACGATTTTCTTGTTCAAGCTCTTTCTGTCTTTTATCTTAAagatgtc
aaaatttcaaggtccaAGTTTACCCTTGCTTATCGGATGCAAGAATGTTC
AATATTATTTTATTGTGCGAGGATTGGTGCTCAGGATCAGAACTGTCTGA
TACTACgtgttttttttgcataaagatgatCTACAGTCATGAATTCAAAC
TTGAACTTAAATTATGTTGATTTTTACAAACACCTTTCTCGTACCCCTGC
CGTAAGCTCAAAGAAATCCAATCCAAAAAGCTATGTGAATGTCagctgaa
aaaaaactttgattttgCTAGTTCTAATCTCCAATAActgacaaataata
gaaatgcCATCTGGGACAACTGATCATCAGAGTTTTTACATAATATCGAG
TGATGGTGACctttttgggtcaaatacctgTTTAGTTATCAAGTTTACAC
AACATATCATCTGCTGTATGTTTATTGTTgctctctttttttttgaaagt
tactGTATGATAActaaaatgttttctcttttctaATGATGTGCTCTTTT
ACTTACTCTGATTCGTTTTCGTAATTACTTATAATTTTGATTGAATGGTT
GAATGGTTGAGAAATTTGTGCATGTCACTTTCGCTGACTCTTAGTCTTGC
TTGATTTTTCTTCCTCGTTATTATGAAACTTCCTTAATGTAATTTGTTTC
GTTATCTATGCCTAAATGCACGATAAATCATGCAGGGGTGTATAGTTTTT
CTTTAATTGGAGTGACAAGACCACTTTCTATTTAGTATTTGCTGATATCT
TTTGAAGCTTCGACTGTTCTCTCAAACCGAAAAAGCATGATGATTGAAAA
AGAAgcatttaatattttttgtatGGGCTTATTTTTTATTAGCTGTAGGG
CACCACACCTTGAAAgtatatacacccctgtctctgagTCTGTTTCTGTG
ATTAAAGGGGTGGGAATTTAATCTGAGATTTATCTAACTGTGGAAGATAC
AGAAAGGGTACAATAAactgaaaatttctttatttatgtGAATAGAACGA
AAAGTTTTGCATTGGCACAAGGGAGCTCTATGAGAATTCAAGAAAAGAAG
AAGGGGATCTTAGTGGGGCCACTTTTTTGTAATATCTCCTTGGATATGTT
TTGTTTGGCATGTGTGGATTCATTTGTTATTTCTATTGGGTCATGTTTAG
CAAAGGGATTCCAGTAGGGGTCCTTAGTGTTGTTTGTGAAGTATATCACC
GTTGGCTTCGTCACAGAGACTGGGTGTATAAATCGGAGTTTGATTCCCTG
ACAGATTATGGGAGGTATTACCTTTTCATCATTATGTCGTTAAATTAAAC
ATCTGACTACTTCATCGGTACTGGTTTTTTGATCAACTTTGCTATCCTTA
ATTACTTTTATCTATTTGATGTTCTCATCTTGTTCTGTTCTCATGGTGAT
ATTGCTCCTTCTGGGGTTCCAGTCATTATAACGGAAAATCAATATAATAT
TTCTGTTACTTTTCCCATTTTACAGTAAGTTTcgagaaaaaagttttctt
ggGTCTTTTGTAAGCTTTTGATGATATCGTCTGttcaatatttcatattt
ccaaCTAACTTTGTGATCCACTTACTTGGagtattttctttaaaacaatt
tgattgtttacataatcaacaaaatatttttgattccTTTTACAAGGAAT
TGCTCTACTACCTGAGACTTGTACGATTTGAAAGTTAGTTACAGTTGATG
CGATGTTTTCACAAGAACAGCGATGTCAATTTGGAAAACGCCATTTTAAC
GGTGAGAGTTTCTGGTATTTTCCCTCTAAGATATAATTCATAGGTCTCCA
TAACTTGGACACGCACggagaacacaaatttgttcgagttatggaaattt
cTAAGAAACCATGTATCTTGTTCGAGTTGACGAGATATATTCGGGTTATA
GAGGTTCCAGTTAAAGAGACTGTGCTGTATTTTATCCACTAACCAAAATT
ACTCCTCAATAATTTAAAGTTATAAGAGGATTTAATATCTCATAGGTTTT
AATTTCGAGGATGAGACCCAAGTCCGCGAAATGATTTCTGTGACATTTCA
TACCAGAagtataattattttttttctacaaaaatcatttttcctgCTGT
AGATCTGTATCCTGCGGACTGAAAACTCTCTTGATCATTTTGAGGTTGAA
GAGAAGTTCTTTTTGGTTTTCCGTATATTAAGATTTCTTCCTTTCTTTCA
TTTACTTACCATCTTGTGAGTCTGCCTGTGTTGCTCTCCCGTTGAGTTCA
TCTTTCAAATTCGattcaatttattttgaaattcataCAATTACATAGTG
ATCATGAATAATGGAAAGATTTTGCTTTGTAAGCACactatatttttaag
aaagtcAGATCTTTTACACAAAATACGAAGGTTGTCTCGGGATATTACAA
TATGCTTTATTAGGCCTGAAGTCTCCTAAGGAGCAAACGTCATCCTCTTT
TTGTTGACTTACAGTTTCGTCCGAATGAACATTGAACATTGAACACGAAT
TCGCTTACGAAGCACTTTCTTCCCTTAGGGAGAAgatgtttttttcttgt
tttcttccCTCGTCTCTATTTTCGTCTTTCAATAATATATTCATAATTGT
TGTcttctttcttatttttatctCCTCACAAAATAATAATATCTCCTTTG
CACTTTGAATAGacgaaatttctttaaaactcTACTGGAAAACTTGAGAA
GAAAAATCAGAGAACGTTTGTTTTTGTGTGTTTGATGTTTTGGATGCTAC
CTATCTTGTAAAGGGTGTAAACACTATTCGAAAGAACTTTCTCTTGTGAT
AGTCATTTTAAAAGCTGGAGCTTTTACCATATTTTATGATAACAGCATAG
TTGCTGAAGATATGGAAAAATCTCCTAAGGTTTCTTAAAAATCTGTTGAA
ACAAAGATGTTAAACACGTCAAGTGCGACGTCCACTTCTTTTGGTAGTCA
TAATGATACAGAGGAGGATTCTGGGATACTATCTTCTTCTCCTGATGAAT
TATGGGAAATGGGAGATGAAGAATATACCACGTGGCTGATGAACGAAATG
TGTAGGTGCTCCGAAACGGCTTTAAGGGTTTCGTATTTTAGCTGTTTGCA
CATCTCTGTCTAAATTCGGTTTTACTGTCAAACTAATAAATTCTACAAAA
TGCCACTCATTTGGCATGACAGTTTGTGTTTGTGAAACTTAATAGTTAAA
ATAGTTTCTGCAAATTGTAAATTTCCAGTCGATTGTTAATATCTTCTTTT
TCATACTTTCCAGCCTCTTCGTCCGACAGAACAACTATCATGACCAAAAC
ACACGGCGCCGATCTTGACATCATCTCACAACTTCTGCTGGAGGTAATGT
TACCGGTCGCGgacattttatgttttatatacCTGAGAATAGTTTCGTAA
AAGTACATCGTCtctgttttttcgaaaatctaagaaTATGTTCTATTTTG
AGGTGAAATAGGGAAATTAAGAAGCTGAATTTCTTATCTGCTCccttcaa
aaatgatcagtcGGGACCAACCTACTGGGTTGGACATATAATATGACAGA
ATACACAATTTCACtcctaaggggggggggctatacACTATTTCTCTGTT
TtccaaacaaaattaaaaatgaaaaagaagctGAGTTATGTCTCAAATTT
AGTGATTTCTGAAGAAGGAttgtttttgcaaaaaaaaactagaCAACGGA
TAAACGTTGTGTTATAGATTTGACAATTTAGTTCTTTggtattttagcga
ttttaacaTCAAAAGGTGTTACCTTCTTTTGTCTCCTACTAacctctttt
tttttattatatttttgtagAAAGAAAAGGATTTGGACATGGCTGCAAAA
ATTGGACAGGTATAAGAAATTTCTGAGTACATTTTTTTTATGTTCCAATT
GTTCGACCTTGCATATTAATCGAGCATGGTTTCACTACTTTTAAGGCATT
TTAAATTCTACGAAAATGCCCCTTATTAGTTATGTGCAGAGTTTTGTGGC
TGTCTCAATTCTCTTTGTCCTCTCAGAAAAGTCCCTCGAAGCCCTTCCGT
TTTCAGGCTTTGTTGCAAATGGCTCTTTTtgcaatgaaaaattttttttt
ctcgaatttaaGCGTTTTACCATTCTCTTTTCTGTTCATTTTTTTAGTCT
TTATTGCAACGAAACAAATCTCTCTTGGTGAAAATCGAACATATGGAGGA
CTACCTCGTCAAAAGCAAAGATAACGTAAGATGTCCAGTTTCCTTTGAGT
CGTCACCCCCGTCTCCAACCCAAAAGGGGTTCACTTGGGTCATTCTTTGT
CGAGTTTTGTCAATCTTGTTGCTTTCTGAAGAGGAATTACTATTTTGAAA
AGTCATGCTACTTAGCTTTTGAGGGTGTTGATAAAAGCAAGCTGCCCCCA
AAATAGCTAATAGCTTTTTTGACTAGTTAAGACAAAAATAGCAACAAACA
CAAGGTCTAGTTTGATCGGCTCTCATCTCGGTTCATCGGCATAACGTTAT
TAAAATCTTGTCATATTAATAAATAAAAGATTTAAAGTTAGTATGACGTC
AATAAAATATGACGTCAATAAAATATGAGAAGTCTCAAGTTGCACTCGAA
AGAATTAAAAAGTTATAGGTTTTTCGTTCGAGAGAATGAGAACTTCGGGA
ACTGGTTTTGCTTTCCTGAATGTTACGGGAAATTGAAAAGACCCGGGATA
ATGGAAATGTTATATATTCTGGTAAGTTGTCAACGAACAAATATTCATTC
CTCTAACTGTAAACAATTATGCAAAAAATACCACTCGATAAGAGAACTGA
TTTCAACtttctgttgtttttcttttgtatagGAAATGCAACTAGAGCAT
GACTTACGGAACAAGAATGAATTTGCTCGAATGTATTTTGAAGATGATCA
ACAAAGTTACAATTCAAGCAGTTCCAAAGAGTAAGCATTTCACCAACCAG
TTCCTACCTAACTCTTCTATTTGTCTGAACTGCTGATGTTCGATTGCTGT
CATTATACCAATCCTCAAATTTTTTTGGATCTTCCTCTTCTGAAATGAGA
ATCTTCACTGACATCATCAGCAGTTTTCGTAGTTTATTCATCTACTCGAG
ATATGTTAAATCATTGCTCAATATGTCGAAACTTTAGTTGCTGcattata
tttgtaaaattttcaaaagagagtTCTTACTGGATCATCACtaggttttt
caaggtttttttgttATATCTTAATTTCAGTTGTGACGACGAAGAAATCC
GTTCTTTGACCAATCGTTGTCGTGCTTTGGAAAAAGAGAATCAAAACCTG
TTTACTGAGGTATTCTTTTCAACAAACCTGGTGGTTTAGTACTTTCCTAA
CTCATTCTTCCGTGCAAATAACAAGACAACTTAGAAACCAAGGGACGTAA
AGTAAACTCTGTAAACTCAGTAAACTGTATTATAGGTATTGAGATTTGTA
ATCCCGAGAACAAATTGAACCTGGTGATGAAATAGTTAGGTGAAAGCAAT
AATGGTGGGTCGGTTGCTTAATCGCCGGGGCAATTTTAACTTTCACTTTA
CAATCTTTATTCAGGCGTTGAACATTCGAGAATACACAGATGAATTTGAA
GAGAAGGAAGAAGGGCTGGTACTGGATTGTATCGAACAATTATGTAATTA
CCTGTTACCATAAATAATTTATGTTGTTATTGTATGTAAACTGCATTATT
TGTCTCGTTTATCATACTGTCATACACTTCATCTGTGATGAAATCTAATT
AGACCTAAGTTGtgtatgttttattttgaaatcatCCTTAAATCTTTCGT
ATTTTTCCAGCGTCGGCGAAATCACAGATCACGCAATTGACGGATGAGAT
AGCGCAGAAGTTTGAAGATAACGTCCAGCAACAAGAAGAAATCACTCAGT
TGATCAACATGGTCGTCGAACTacagaagaaacaaaaacaggTTCCATTC
AACAATGTTTTCACCCACATCCGCATCCCCATATCTTTAGTTCGGATAAC
TTTTCGAAACCCTATTCCAATCTAAGTACTGCCCAGTATTGCCAGATTGT
CTGGGATATCATCAAACCTGCTGGGTTAAGCCATGCTTAGATTAATTCGT
AAGGTTAAGAACGGATCTTTCTTCTTTGAAGACATCATTCTTTCCTGAAA
CATTAACTTTCGTACATTTTCTCATGGCCCGGAGAAATTCTCTTTCATCT
TGGACATTCTAATTTACAATTTACTTGAATCTTTTAGCTGTGTGTGGACA
ATGACGATTTACAAGGACAATTGATCGAAGCTGAAAATGATAAAGACAGT
CTGAAGCAACAGGTATGTGTGAAATCGCAAAACATTTCAAGAGCTTCGCA
TAATGAGAAAGGAAATAAGGAAATAACCCCGTCCATGTGGTCCGCAATAG
CTCTATCCTATAATTGGTTGCCTATCCTAGGATTTTTATTATAAGGCACC
TGCTGGTAGTgcactttgttgttgttgaatatCATTTTCACCTTATTTGA
TATCCTAGGATAGGGAAATTATCGCACAGTTGACCCCGTGCTTGTGACAG
TGCAGAGCAATGGTATATCGGAAACACTTTATATCCTGACCTATTCagtc
atcaaattttgataatcatttttatccaacaaacCGATCAATACATAAAA
GTTTGACCTAGCTTCTATTTTCTACCTTAATACTGTTTTCACTTCACAGC
TGGCCATCATGCGTTCGAAATTCGAAGAAACTTATGAAATGTTACAAGAG
AACCAACAAGAGATTAAAACACTGAAGTCACGGTTTGAGTGAGTAAAGTA
ATGTCTTTACAAAGATGCCTTTTTTCTCGTGTCTTTACTGGCAAACGTTT
taataaaagtaaaagtaaatgGATGTGCACTCTCACTAATTTGCACTCGA
ATAGaagtctaatttgttcgaattacagaaaaaattcgaattatCGAGAG
TATATTAGATAGGTTTCCCCTTGACAGGAACTGGGAActagttcgaatta
gcgagagtccgGCGGCGCACATATTTCTTTATCCCAGAAATTGTTCCgga
caaaagtaaaaaaaaattcgttaATCCCCGTCCCGTCCTACGTATAACTA
GCTGGTACAATTCGGGAAGGTTTCAATTACGGCAATTTCTTATTATTTTC
ATCCAGTGTGATATTCTCTCCTCACCATGACgacaattttatttcatttc
agtATGACTACATCATCAAATCCATCTGATTGGTTGAACGATTCTGGAAA
TTCACTGGCTCTCCAGGTAGGATGATATTTATCATTGCAGATAGATTCAG
TGTTgcttttttattaaattaaacAAATTAATNTCCAGGTAGGATGACAT
TTACCATTGCAGATAGATTCAGTGTTGCTTTTTATTAAATTAAACAAATT
AATCGAATCATATAAtttctgtttcacttttttagGACTCGCTAGCCAAT
GAGATTGAAGAATCTGTTCGTCGTGATCTAATCTATACTCAAGACCGAAG
gtaatcatttattttttacaaacgAGCAAAAAATCTTTCTCTTGAAAGAT
CAGCGGTGTGAACTGTTCATTGATTTTCGCCCATGACTTTCAAGTGCATC
TAGAATTCTtttgcataaaatttctgaatttgcattctttttttttctca
ggaaACAAAACAAGAAAGTGTTGGAGAACGTCCGATATTTGAATGTTCGG
GGTGCACCGAGTTCCATTTCAACATCCGGCCGAACATCACCGGTGTCCAA
TTGGAGTCTGGCGTCCGATGAACGTTCAGAAACTATGTCCACCGTCTCCA
ATATTGATTGTAAGTTGcctgttttatttatttattccaTTTTCTCCAGC
TTACTTTTAATACATCGACCTTGGAGTTATGATCTTGACAATACAAATGN
CTCTCCAGCTTACTTTTAATACATATCGACCTTGGAGCTATGATCTTGAC
AATACAAATGTTACATTTACGTTACGTTTTTTTATCATTGGTTTTAAGTC
TGAATATCCGCTTTaagcattgggctcttccagaaaaaatccgttcatgg
ggggtggaggatgaattgtccaggggtattgaaaaaataccaaaaaattg
caatgtccagggggtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtgtgtccagggggttaaaaatcaaaatgtccaggggtaatttttt
gtgtccacggggttgatttgatgtttgtccaggggtataacctgtgtcca
gggggttaaaaatcaaaatgtccaggggtaattcatgaaaaaaataatat
atcctccacccccaccCATGAACggactttttctggaagagcccattatt
cGAAGATCTTCATTAGGAAGGAACAGTTTTCACTTATTTTTCATTATAAG
CTGCCTTATTCTTTAGGTGAAAGTATGAAATCgaagaaaaatgtgaaaaa
attacaaatcgtTAAACCCATGGAAGGTAATGCATacattttttcctttt
aaaaccCAATAAGTGCCACTGGCAGCATATGAGAATTCTCATTTTCTCTT
CTGTCTAGACCTAGGAGCACCGTAAACCATGATGTCCGGCCCGAAAACTT
AGTCCCGTTACTTTTGCTCGTGttttggaacaatataattCCTTGCCCGC
CTTCATGGTCCTTATCTTTTACTTTTTCTACACTATTTCTTGGTCCAAAT
CACAATTACATCTCATATTCCTCTCAAACAGGGTCAGACACGTTAAGTAA
ATGGCATAATCTGGCCTCCCAAAACGTGAAGGACGGTTTCAATGTCTCTG
ATGTCTCACCGACGAAGTCTGATGCACCACAAGCGATTGTTGATAGTGAC
ACTTCGACAGCTGAAGAGAGTGACCACGATAACAATGGTCAAACTGCACA
CAACATTGACCCTTCAGCTCCAACTGCCCACAAGAAAACGCCGACTATTC
GGAAACCGTTAAAACCTAAGAAACAGAGTACGCCGACCAGTGTAAAAAAT
AGCGGCGGCGGCAATTCATTTTTGAAAGGATTAGAGACACCTGACACAAC
CAAACGAACCATATTGACGCGAAATTCGTCAGCGATGAACTCCTTACGTC
AAGGACGGCGTATGTTACGTAGCAAAGATAACAATGGGCGATCCAAAGCG
GAAGTTATTGATATGATCGCAAATGCAATGAATAAAGCCAACGTAGAAGC
GCAAGCGGGGCAACGTATTTTGTCTTCCATCACAAACAGTACGTCGTCAA
CTCCACGCCGTGAAAGCATACGTCAGCGCGCGGAAACGTTGAGTAAATCA
CCCGATATTCAAGAAATGCCGACCGTGacaaaagttttagaaaaagtcGC
ACACAATGTTGAAGCCCTCGGTTTTTCTTCCTCTGACTTGGAATCAGAAA
TCGATGACGCCCCACCACGCCCGTTTGATACTTTACCACCTCAGGGTGTT
CAGACTAGTTTTAATTCCAATACGTCGATTGTTCAAACTGAACTGAACAG
TGTAACTGGACCTTTAGGTTTATTAAGCAGAGCGGATTTGAATGAACCTA
ACCCGATGTTGAAAAACAGACTACTGCGCATGTCAAGTATCGATANCCAA
CGACCACAAATACGAAGTTCGGTTCTGCGACAGACATTGGACAAGAAACT
CCTCCACCCCAAAAGCCACAAACTTCCAAATCAGTAGAAACAGGCTTAGA
CAGTGTGAGAACTCCTGATCAAAACACGAGTGGAGGAGCATTCGGGTTTT
TCTCCTCCTTCCTTGGGAAGCTTTCATGATTGGATGTTCGTTCAGTTTTG
TTATTTACTGTCATTTGAATGAAATTGAGAAAATCAACTTCTGTCAAGTG
CCATttgaatagatcttatcggagtttttgatttttctaaaaacgcggtg
cattgtgggattgtttcgggaatATTActatagaattccctcgaggaatt
cctaagagatttctattgaaatactcccgaaacaatcccacaacgcatcg
cttttttagaaaaatcaaaaactccgataagatctattaaaGGGATATAA
CAGTACttgcaaaatttgtaaacaaactgtatgcaacgggtacaaaatca
aaacaaatgtcacgtgtcaaaataaaaaatcaaaccaaatatgactaatt
ttgattgttcaattgttttacaagttggTTTTGGACAcgttttttaattg
ttctctttaatgacacctggttcgcgcaatgtttacattttactactttt
atgtccctttaaagatgCAACCGGACCGTCGGGTACATACATTTGTAATT
GTAAATATGTATTCCAATTCGAAGAGAAATCGTTCGACATGAGTATTCCT
TCCTTGAAAATTCGTTacgttttttgaaatcgtgtttttcgcaatttttg
agACAGGTTAAAAACCTATTTCATCTTGTATGAAGCATGATCAAGTAATT
TTGAAATAGACCTTGCTGAATTCGAAATTTCTCTTGGTGTTGTAGGGACT
TACTCTTTACCGTTTTGTAACTTTATTTTTCGTTTGAAAACTCGACAATT
TTacagtttaaaaaataaaatgagaattatatttattatatCAAGGAGac
ttttttcgatatttttttgtgattagaatttttatattttaagatTTGTC
AGCAATGTATGATTTTGAAGATTGGTCTTGNCCTTTTATTTTAGAGAAGT
CGATTTTATGacagggttcagacagaccttcgaaaataaaattccctgag
tttccctgaattttaatcaattttcaaaggttttttccctgagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013731XLOC_013731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024459-exon-sc0000499-1491911889:191197..191436TCONS_00024459-exon-sc0000499-1491911889:191197..191436Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:191197..191436TCONS_00024459-exon-sc0000499-1510915933:191197..191436Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:191197..191436TCONS_00024459-exon-sc0000499-1575043694:191197..191436Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:195716..195739TCONS_00024459-exon-sc0000499-1491911889:195716..195739Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:195716..195739TCONS_00024459-exon-sc0000499-1510915933:195716..195739Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:195716..195739TCONS_00024459-exon-sc0000499-1575043694:195716..195739Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:196217..196255TCONS_00024459-exon-sc0000499-1491911889:196217..196255Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:196217..196255TCONS_00024459-exon-sc0000499-1510915933:196217..196255Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:196217..196255TCONS_00024459-exon-sc0000499-1575043694:196217..196255Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:196544..196621TCONS_00024459-exon-sc0000499-1491911889:196544..196621Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:196544..196621TCONS_00024459-exon-sc0000499-1510915933:196544..196621Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:196544..196621TCONS_00024459-exon-sc0000499-1575043694:196544..196621Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:197229..197326TCONS_00024459-exon-sc0000499-1491911889:197229..197326Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:197229..197326TCONS_00024459-exon-sc0000499-1510915933:197229..197326Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:197229..197326TCONS_00024459-exon-sc0000499-1575043694:197229..197326Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:197627..197705TCONS_00024459-exon-sc0000499-1491911889:197627..197705Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:197627..197705TCONS_00024459-exon-sc0000499-1510915933:197627..197705Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:197627..197705TCONS_00024459-exon-sc0000499-1575043694:197627..197705Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:197961..198039TCONS_00024459-exon-sc0000499-1491911889:197961..198039Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:197961..198039TCONS_00024459-exon-sc0000499-1510915933:197961..198039Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:197961..198039TCONS_00024459-exon-sc0000499-1575043694:197961..198039Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:198207..198337TCONS_00024459-exon-sc0000499-1491911889:198207..198337Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:198207..198337TCONS_00024459-exon-sc0000499-1510915933:198207..198337Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:198207..198337TCONS_00024459-exon-sc0000499-1575043694:198207..198337Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:198634..198708TCONS_00024459-exon-sc0000499-1491911889:198634..198708Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:198634..198708TCONS_00024459-exon-sc0000499-1510915933:198634..198708Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:198634..198708TCONS_00024459-exon-sc0000499-1575043694:198634..198708Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:199096..199184TCONS_00024459-exon-sc0000499-1491911889:199096..199184Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:199096..199184TCONS_00024459-exon-sc0000499-1510915933:199096..199184Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:199096..199184TCONS_00024459-exon-sc0000499-1575043694:199096..199184Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:199599..199662TCONS_00024459-exon-sc0000499-1491911889:199599..199662Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:199599..199662TCONS_00024459-exon-sc0000499-1510915933:199599..199662Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:199599..199662TCONS_00024459-exon-sc0000499-1575043694:199599..199662Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:199832..199896TCONS_00024459-exon-sc0000499-1491911889:199832..199896Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:199832..199896TCONS_00024459-exon-sc0000499-1510915933:199832..199896Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:199832..199896TCONS_00024459-exon-sc0000499-1575043694:199832..199896Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:200048..200205TCONS_00024459-exon-sc0000499-1491911889:200048..200205Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:200048..200205TCONS_00024459-exon-sc0000499-1510915933:200048..200205Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:200048..200205TCONS_00024459-exon-sc0000499-1575043694:200048..200205Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:200963..201022TCONS_00024459-exon-sc0000499-1491911889:200963..201022Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:200963..201022TCONS_00024459-exon-sc0000499-1510915933:200963..201022Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:200963..201022TCONS_00024459-exon-sc0000499-1575043694:200963..201022Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1491911889:201278..203342TCONS_00024459-exon-sc0000499-1491911889:201278..203342Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1510915933:201278..203342TCONS_00024459-exon-sc0000499-1510915933:201278..203342Clytia hemisphaericaexon
TCONS_00024459-exon-sc0000499-1575043694:201278..203342TCONS_00024459-exon-sc0000499-1575043694:201278..203342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:191197..203342 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42159	2.02965	0.00513479	0.15148	5.9858	4.89197	7.4265	7.48862	5.72911	6.67946	11.1349	3.55887	5.43882	5.65873	3.7007	3.23351	6.74144	5.57254	4.83499	4.87756	4.05274	4.85374	4.28432	5.48639	7.71424	9.0336	4.87035	3.146	6.48732	5.38621
Blast
[Close]
BLAST of TCONS_00024459 vs. Swiss-Prot (Human)
Match: TRAK1 (Trafficking kinesin-binding protein 1 OS=Homo sapiens GN=TRAK1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.194e-39
Identity = 115/327 (35.17%), Postives = 185/327 (56.57%), Query Frame = 1 
Query:  235 LEIISQLLLEKEKDLDMAAKIGQSLLQRNKSLLVKIEHMEDYLVKSKDNEMQLEHDLRNKNEFARMYFEDDQQS-----------YNSSSSKDCDDEEIRSLTNRCRALEKENQNLFTEALNIREYTDEFEEKEEGLVLDCIEQLSSAKSQITQLTDEIAQKFEDNVQQQEEITQLINMVVELQKKQKQLCVDNDDLQGQLIEAENDKDSLKQQLAIMRSKFEETYEMLQENQQEIKTLKSRFDMTTSSNPSDWLNDSGNSLALQDSLANEIEESVRRDLIYTQDRRK---QNKKVLENVRYLNVRGAPSSISTSGRTSPVSNWSLA 1173
            ++ +++LL EKE+DL++AA+IGQSLL++NK+L  + E +E+ +   ++   QL H+L  K+E  + Y    ++S            N SSS   +   + SL  + + LE+EN  L +EA  ++  T  +EEKE+ LV DC+++L  A  QI  +++E+A+K ED  +QQEEIT L++ +V+LQKK K   V+N++L   L  A++ +  L  +L  +  K+ E  EML E Q+E+K L+++    T+S     L      L   DSLA EIE ++R++L   +         K+V E VR +N      S++ S    P SN S A
Sbjct:  112 IDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLG-----LFPMDSLAAEIEGTMRKELQLEEAESPDITHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSA 433
The following BLAST results are available for this feature:
BLAST of TCONS_00024459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAK12.194e-3935.17Trafficking kinesin-binding protein 1 OS=Homo sapi... [more]
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