TCONS_00024461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024461
Unique NameTCONS_00024461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024461 ID=TCONS_00024461|Name=TCONS_00024461|organism=Clytia hemisphaerica|type=transcript|length=527bp
AAACGATCTACATGTTAAACCCGACTAGTATCTGGTAAATCTTTATGTTG
AGGCCGACTGATAACATCAAAACAAGAACTCTATCTTCACTCAAAAAGCG
TCCAAAAagGATAAAAAGTAAGAAATGTCACAATCTGCACAAACATTTCA
GCCACCCAAATCATGGGAGTTGAGCTTATATGAATTACATCGTACTCCAC
AAGAAGCAATAACAGATGATACAGAGATAGTGTTGTCACCAAGAAGTCTT
CACAGTGAATTAATGTGTCCCATTTGTTTGGATATGTTAACTACAACGAT
GACCACCAAAGAATGTCTTCATAGGTTTTGTCATGATTGTATTATCACTG
CATTGAGAGCTGGTAACAAAGAATGCCCTACTTGTCGAAAGAAATTGATT
TCGAAACGATCTTTGAGAAGGGATCCAAATTTTGATTCTCTCATCGaaaa
gATCTACCCTAATCGTGACGAATATGATGCACAGCAAGAACAAGTGCTTG
AGAAACTCAATCAACACACCAATCAAC
Run BLAST on NCBI

protein sequence of TCONS_00024461-protein

>TCONS_00024461-protein ID=TCONS_00024461-protein|Name=TCONS_00024461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MSQSAQTFQPPKSWELSLYELHRTPQEAITDDTEIVLSPRSLHSELMCPI
CLDMLTTTMTTKECLHRFCHDCIITALRAGNKECPTCRKKLISKRSLRRD
PNFDSLIEKIYPNRDEYDAQQEQVLEKLNQHTNQ
Run BLAST on NCBI

transcript from alignment at sc0000499:292025..296147+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024461 ID=TCONS_00024461|Name=TCONS_00024461|organism=Clytia hemisphaerica|type=transcript|length=4123bp|location=Sequence derived from alignment at sc0000499:292025..296147+ (Clytia hemisphaerica)
AAACGATCTACATGTTAAACCCGACTAGTATCTGGTAAATCTTTATGTTG
AGGCCGACTGATAACATCAAAACAAGAACTCTATCTTCACTCAAAAAGCG
TCCAAAAaggtatattttatttttttatagtaTATACATTTAAAAGAATC
CATCGGGTCTGATAGATGGTTTCCAGATTGATGACTGAAAGTCACTGGTG
GGGCTCCAAGTCCAAAATATCTTTGCAATAATCACACAGGTTTTTCAGGG
GAGGATATTTTGACATAGTTTTATAATAGAGTGCAGCCCAGCAggttttc
agctgttttcagaCAGTCAGGGatatccctcaattgcggtatactgcaat
tgcagtaaaaacgtcacttttacatttttcatatactgcaattgcagatT
ATTAAAAAAACAGAATTCGAGATTCAAGGAGcgagaaaacaggcaatttt
tatACATAATATAATTGaccatatctttttaacgcaccTAGgcgaaatat
tttttccgtagattagattcttttaataaagaaaagttttcttctcgaca
aatgaaaactactgcaattgcagtataccgcaattgagggatatCCCTGA
CTGTCAGAGCATGCATGACATGGGTTGCCCCAAGGAAAATTTCCAACATC
AAAACTCTGCTCCTAAGATCTGTTTCCCACCACAAAAAAGCCAGAAGAAT
TGGTGAAATTAGCcagtttttaataattttgccCCTGAAATGtagatatt
atcaaaattttgctcCTGCTCTTAAAAAGTAAGCAATCTCTGCCCCCGAG
ATCTCGATGATTTCTGTGTCATACTCCGCAAACTGGGAGTGCAGTACCGT
GGAGtcgagtaacttgcatcagtggagggaaacttgcatagactgaccaa
tcaaagcagcaaaatttcaaaacaagtgaACTAACGGACGCAGCTCCACT
CGCAGCTCGACTActctactttttattttaatgaccagccaggtcattca
tttgagggggctatgcatgttagcctccactgatgcaagttacccgatct
cacggtacatACAACAGTATAAGAGACAACAGTGGAGTGCTTTAATAGTG
TTAGGTGTTAGGGTGTACACTCGTCAGGAGTTTTAGTGGAGAAGATGACA
AAGCGATAGGAAAAAAATGCGTTTTTGACTTTGATAACCCATATCTTGAT
AGAAAAACATTATAAAAGgctaaaataaaagttttaaaagtgtACAGAAT
CTATCTAGCTGGGCATTGAACAAAGAAAGAATTATACAATCATACCTCTT
TTCTTCATCTCACAATCTCCAACACACTCGCTAAGAGCCCAGTTTGAAAA
GAAGAGGAAATTGTGAGATAGATAAAAGAGGTCAATTCAACACACGCAGA
AATGATAGAGTTTTCTTTTTGTGCCACCTGCTTCACCAGTAGACACCTTG
CCGGGTCTTCTGAAATGCATTATAGTCTTTCAAGGTTGTTCTTCATTGTC
CATCCATGCCGTTGGGAACATGGGACTTTTTGTATTTCTTGCAAACTTTA
TGAAAACAGTTTTACTTTCCTAAGGCGAGATGAACTGGTTTACTGGTTGA
ATTTTTCAATTGCAGTGGCAAAATGGTGTACATGGAAGGTTTTATAGGCA
ATTTCAGATGATGAAACtgggaaatttcaaaagaaaagaaaataatgaac
ttttattgaaataatgaacttttttaaGCGGCAGCTCGAAGGCATGCGGG
CAGTCGAAGGTTAACCGGTTCATTTCCCCTTGCCTAATAAGGAAAGTCAG
GACAATGGTAAAATGCCTTTGTATTCCAAGTTCCCAAATAAGCGTACCCA
CCCGGTTATCAATTTTAGGACAATTTTTTGGACCCCCCTATCAACATTAT
TATTAGTTTATTTGTCAACACAGGTCAGCTTCTATGTACAAAACTATATC
TTTATATACTAAAAGAATTTCATGTTTTGTGTCTGTCACGCTAAAATGGT
ACGCCAGTTGCAATTTTGAATGGTTTGGGTGGTTGATTTGAGTATGAAAG
GAGGATTTCAAGCAGTTTTGAGACAAAAAAACTCATTTCCTTTTGAAAAA
CGAGTAATACGTCGTAATTTTNGTTTACTGGTTGAATTTTTCAATTGCAG
TGGCAAAATGGTGTACATGGAAGGTTTTATAGGCAATTTCAGATGATGAA
ACtgggaaatttcaaaagaaaagaaaataatgaacttttattgaaataat
gaacttttttaaGCGGCAGCTCGAAGGCATGCGGGCAGTCGAAGGTTAAC
CGGTTCATTTCCCCTTGCCTAATAAGGAAAGTCAGGACAATGGTAAAATG
CCTTTGTATTCCAAGTTCCCAAATAAGCGTACCCACCCGGTTATCAATTT
TAGGACAATTTTTTGGACCCCCCTATCAACATTATTATTAGTTTATTTGT
CAACACAGGTCAGGTTCTATGTACAAAACTATATCTTTATATACTAAAAG
AATTTCATGTTTTGTGTCTGTCACGCTAAAATGGTACGCCAGTTGCAATT
TTGAATGGTTTGGGTGGTTGATTTGAGTATGAAAGGAGGATTTCAAGCAG
TTTTGAGACAAAAAAACTCATTTCCTTTTGAAAAACGAGTAATACGTCGC
AATTTTTATTGTATGtttaagattttatttttcgttAATGATTGAGCAAG
AAGATGGTAGCCTAGCTATGTACCAACAAAAGATATCACCAGGGACATAT
GAAATATGGTTCCCACATTGGCAGTTAAAACTGATGTGGACCTGCAGgct
aagaaacaaaaaagtgaaacagctGTAAATGCAAAGTGTGTTTATTTTCG
TGCAAGACTAAGGAGTTAGGTTAGGTTAAAAGtgtcttatcctgttctta
ttggGACCTccccaaagaaaattttgaggctAAGGGCTAAAATTTGGGTT
CCTACGTCAAAATGCACATCTCAAATTGACAGGTCTGGTGATGATTGGTC
ATATGATCAGAAAGAATTAGATGTGATTTAAGATCCTTTTAAtgaatttt
gtcattttgtgttagttaaaaagttttttttaacataacttttaattgaa
aaaaatgaatcaacAATAAATCTTTTAGTTCACAATATTTTCACAaaact
gtatactttttttggtgcacctaGTATAGTACAGTGCTGATTTCCAATAA
GGAAATGCATATAGATGCTCTGCctcccaaatctcctgagtaaATATAGT
ttgacagaaattcttatttcctCTCATATTAGGAATGTCTGGCGCTCACa
caatatttttgtttaaagtTTTGCTGAGTAAGCTAGATGAGAGTCTGCAA
AACGTTATGAAGGGTGGACAGGggtggaaaaaattttcttacataTATCT
TTACACACTAggcaaataaaaatgaaaattgtgttgtttttaaaaacctt
attttttgcTTCCTCTCTTCTTAGGATAAAAAGTAAGAAATGTCACAATC
TGCACAAACATTTCAGCCACCCAAATCATGGGAGTTGAGCTTATATGAAT
TACATCGTACTCCACAAGAAGCAATAACAGATGATACAGAGATAGTGTTG
TCACCAAGAAGTCTTCACAGTGAATTAATGTGTCCCATTTGTTTGGATAT
GTTAACTACAACGATGACCACCAAAGAATGTCTTCATAGGTTTTGTCATG
ATTGTATTATCACTGCATTGAGAGCTGGTAACAAAGAATGCCCTACTTGT
CGAAAGAAATTGATTTCGAAACGATCTTTGAGAAGGGATCCAAATTTTGA
TTCTCTCATCGaaaaggtattttttttcattatgtATATGAGAANAGATC
CAAATTTTGATTCTCTCATCGaaaaggtattttttttcattatgtatatg
agaagatgaagaaaatactttttgataatttagtAATTTATTTAGGAATT
CGATAAGATGCTATTTACCATCAGTAGATTTCATCAGGAGAATCATTTTA
CTTTCAAGAcaactttcaactttttgctTCTCTCATTTATGTTACAGATC
TACCCTAATCGTGACGAATATGATGCACAGCAAGAACAAGTGCTTGAGAA
ACTCAATCAACACACCAATCAAC

Coding sequence (CDS) from alignment at sc0000499:292025..296147+

>TCONS_00024461 ID=TCONS_00024461|Name=TCONS_00024461|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0000499:292025..296147+ (Clytia hemisphaerica)
ATGTCACAATCTGCACAAACATTTCAGCCACCCAAATCATGGGAGTTGAG
CTTATATGAATTACATCGTACTCCACAAGAAGCAATAACAGATGATACAG
AGATAGTGTTGTCACCAAGAAGTCTTCACAGTGAATTAATGTGTCCCATT
TGTTTGGATATGTTAACTACAACGATGACCACCAAAGAATGTCTTCATAG
GTTTTGTCATGATTGTATTATCACTGCATTGAGAGCTGGTAACAAAGAAT
GCCCTACTTGTCGAAAGAAATTGATTTCGAAACGATCTTTGAGAAGGGAT
CCAAATTTTGATTCTCTCATCGaaaagATCTACCCTAATCGTGACGAATA
TGATGCACAGCAAGAACAAGTGCTTGAGAAACTCAATCAACACACCAATC
AAATGTCACAATCTGCACAAACATTTCAGCCACCCAAATCATGGGAGTTG
AGCTTATATGAATTACATCGTACTCCACAAGAAGCAATAACAGATGATAC
AGAGATAGTGTTGTCACCAAGAAGTCTTCACAGTGAATTAATGTGTCCCA
TTTGTTTGGATATGTTAACTACAACGATGACCACCAAAGAATGTCTTCAT
AGGTTTTGTCATGATTGTATTATCACTGCATTGAGAGCTGGTAACAAAGA
ATGCCCTACTTGTCGAAAGAAATTGATTTCGAAACGATCTTTGAGAAGGG
ATCCAAATTTTGATTCTCTCATCGaaaagATCTACCCTAATCGTGACGAA
TATGATGCACAGCAAGAACAAGTGCTTGAGAAACTCAATCAACACACCAA
TCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013732XLOC_013732Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024461-proteinTCONS_00024461-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024461-exon-sc0000499-1491911889:292025..292133TCONS_00024461-exon-sc0000499-1491911889:292025..292133Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1510915933:292025..292133TCONS_00024461-exon-sc0000499-1510915933:292025..292133Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1575043694:292025..292133TCONS_00024461-exon-sc0000499-1575043694:292025..292133Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1491911889:295499..295840TCONS_00024461-exon-sc0000499-1491911889:295499..295840Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1510915933:295499..295840TCONS_00024461-exon-sc0000499-1510915933:295499..295840Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1575043694:295499..295840TCONS_00024461-exon-sc0000499-1575043694:295499..295840Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1491911889:296072..296147TCONS_00024461-exon-sc0000499-1491911889:296072..296147Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1510915933:296072..296147TCONS_00024461-exon-sc0000499-1510915933:296072..296147Clytia hemisphaericaexon
TCONS_00024461-exon-sc0000499-1575043694:296072..296147TCONS_00024461-exon-sc0000499-1575043694:296072..296147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:292025..296147 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2802	12.3501	4.14647	3.76672	9.15265	4.59062	5.49998	7.04645	5.02786	8.52267	4.07378	6.00783	4.51068	2.66659	3.85144	5.28625	4.85403	3.92862	2.15656	2.24971	4.34245	6.47839	13.0137	14.3365	7.97532	8.50571	3.58671	3.82351	8.83387	9.27187
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Blast
[Close]
BLAST of TCONS_00024461 vs. Swiss-Prot (Human)
Match: RING2 (E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.077e-64
Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 2 
Query:  125 MSQSAQT--FQP-PKSWELSLYELHRTPQEAITDDTEIVLSPRSLHSELMCPICLDMLTTTMTTKECLHRFCHDCIITALRAGNKECPTCXXXXXXXXXXXXDPNFDSLIEKIYPNRDEYDAQQEQVLEKLNQHTNQ 526
            MSQ+ QT   QP  K+WELSLYEL RTPQEAITD  EIV+SPRSLHSELMCPICLDML  TMTTKECLHRFC DCIITALR+GNKECPTCRKKL+SKRSLR DPNFD+LI KIYP+RDEY+A QE+VL ++N+H NQ
Sbjct:    1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQ 137
The following BLAST results are available for this feature:
BLAST of TCONS_00024461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RING21.077e-6478.83E3 ubiquitin-protein ligase RING2 OS=Homo sapiens ... [more]
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