TCONS_00024484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024484
Unique NameTCONS_00024484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024484 ID=TCONS_00024484|Name=TCONS_00024484|organism=Clytia hemisphaerica|type=transcript|length=422bp
CGCATATTTAGTTTTATTGTCatgcttttttgaagtaaacGAGCTTCCTC
AATGCACCATGAACGTGATAAATCCAGGATGAAAGATGAAATTCGACACT
GACCATATTGCAAAATGTGAACATTCATTCTATTGTGTTACAGGGGCCTA
CAGCTGGGCTCCAATTATAGTTTatcacaaaatttcaaatgatCCTTTCT
TGCTTGAAGTATACGTGATAACGGAGCGATTGTCCGATAAAAGCATCTCT
AATGATTTNAATCTTTTCTTGCTTGAAGTATACGTGATAACGGAGCGATT
GTCCGATAAAAGCATCTCTAATGATTTGATTTCACTCGAGGACGTTCCAG
TTGGCTCTTGTCAGCATATATTCATATTTCCAAAAGCACGTTCGATCGTG
GAACCAACACAGCAGATCttct
Run BLAST on NCBI

protein sequence of TCONS_00024484-protein

>TCONS_00024484-protein ID=TCONS_00024484-protein|Name=TCONS_00024484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MKFDTDHIAKCEHSFYCVTGAYSWAPIIVYHKISNDPFLLEVYVITERLS
DKSISNDXNLFLLEVYVITERLSDKSISNDLISLEDVPVGSCQHIFIFPK
ARSIVEPTQQIF
Run BLAST on NCBI

transcript from alignment at sc0000499:61259..61680

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024484 ID=TCONS_00024484|Name=TCONS_00024484|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0000499:61259..61680 (Clytia hemisphaerica)
agaaGATCTGCTGTGTTGGTTCCACGATCGAACGTGCTTTTGGAAATATG
AATATATGCTGACAAGAGCCAACTGGAACGTCCTCGAGTGAAATCAAATC
ATTAGAGATGCTTTTATCGGACAATCGCTCCGTTATCACGTATACTTCAA
GCAAGAAAAGATTNAAATCATTAGAGATGCTTTTATCGGACAATCGCTCC
GTTATCACGTATACTTCAAGCAAGAAAGGatcatttgaaattttgtgatA
AACTATAATTGGAGCCCAGCTGTAGGCCCCTGTAACACAATAGAATGAAT
GTTCACATTTTGCAATATGGTCAGTGTCGAATTTCATCTTTCATCCTGGA
TTTATCACGTTCATGGTGCATTGAGGAAGCTCgtttacttcaaaaaagca
tGACAATAAAACTAAATATGCG

Coding sequence (CDS) from alignment at sc0000499:61259..61680

>TCONS_00024484 ID=TCONS_00024484|Name=TCONS_00024484|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000499:61259..61680 (Clytia hemisphaerica)
gaaGATCTGCTGTGTTGGTTCCACGATCGAACGTGCTTTTGGAAATATGA
ATATATGCTGACAAGAGCCAACTGGAACGTCCTCGAGTGAAATCAAATCA
TTAGAGATGCTTTTATCGGACAATCGCTCCGTTATCACGTATACTTCAAG
CAAGAAAAGATTNAAATCATTAGAGATGCTTTTATCGGACAATCGCTCCG
TTATCACGTATACTTCAAGCAAGAAAGGatcatttgaaattttgtgatAA
ACTATAATTGGAGCCCAGCTGTAGGCCCCTGTAACACAATAGAATGAATG
TTCACATTTTGCAATATGGTCAGTGTCGAATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013749XLOC_013749Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024484-proteinTCONS_00024484-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024484-exon-sc0000499-1491911889:61259..61680TCONS_00024484-exon-sc0000499-1491911889:61259..61680Clytia hemisphaericaexon
TCONS_00024484-exon-sc0000499-1510915933:61259..61680TCONS_00024484-exon-sc0000499-1510915933:61259..61680Clytia hemisphaericaexon
TCONS_00024484-exon-sc0000499-1575043694:61259..61680TCONS_00024484-exon-sc0000499-1575043694:61259..61680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:61259..61680 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66562	1.13697	0	0.184506	0	0.177496	1.07071	0.801908	2.24574	2.26014	0	0.554647	0.443101	0.230082	0.472898	0.101498	0.875263	0.12816	0	0.18528	0.161042	0.235652	0.190977	0.173626	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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