TCONS_00024485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024485
Unique NameTCONS_00024485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024485 ID=TCONS_00024485|Name=TCONS_00024485|organism=Clytia hemisphaerica|type=transcript|length=678bp
TGCGAATCAATGTCAGAAGGAAAAGTAGTTGAGTGTGTCTACTTTGATTT
TGCGAAAGCGTTTGATACAGTTCTTCACAGGAGGTTGATAAAGAAACTAG
AATGTTACGGGATCAGCGGAAACCTGTTAAAATGGATTACAGCGTTTTTA
TCAGACCGCAAGCAACTAGTCAAGGTTAACTCAGTTAAATCAACTACTGA
TCATGTCATAAGTGGAATTCCTCAAGGAAGCGTACTTGGGCCTCTGCTCT
TTGTTATCTACATAAACGATTTGCCAGAAAAGGTAGTCTCCGATGCATTT
CTCTTTGCCGACGATACGAAGATAGTGAAAATAATCAATTCTATTAGAGA
CTCTTTAGTTGTTCAAAAAGATATCTGTGAATTGGAAAAGTGGTCCTGAG
ATTGGTTACTAAAGTTTCATCCTGACAAATGCCATGTCTTGTCTTGACTA
TAGGTAAAGTTGCCAATATTAAGCATGCACACAGATACCAACTTGGAGGT
AACGAACTTGAccatgtttttgaagaaaataaccTAGGCATCTTGATTga
ctctgaattatcttttgaGGAACATATCTCTAGACAAGTCAATAAAGCGA
ATTCTATCTTAGGAGTCATCCAAAGAAGCTTTAGTGACCTCAGTCCTTCG
GCATTTTGCACATTGTATACGACCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00024485-protein

>TCONS_00024485-protein ID=TCONS_00024485-protein|Name=TCONS_00024485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
CESMSEGKVVECVYFDFAKAFDTVLHRRLIKKLECYGISGNLLKWITAFL
SDRKQLVKVNSVKSTTDHVISGIPQGSVLGPLLFVIYINDLPEKVVSDAF
LFADDTKIVKIINSIRDSLVVQKDICELEKWS
Run BLAST on NCBI

transcript from alignment at sc0000499:100477..101154

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024485 ID=TCONS_00024485|Name=TCONS_00024485|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0000499:100477..101154 (Clytia hemisphaerica)
CAAAGGTCGTATACAATGTGCAAAATGCCGAAGGACTGAGGTCACTAAAG
CTTCTTTGGATGACTCCTAAGATAGAATTCGCTTTATTGACTTGTCTAGA
GATATGTTCCtcaaaagataattcagagtcAATCAAGATGCCTAggttat
tttcttcaaaaacatggTCAAGTTCGTTACCTCCAAGTTGGTATCTGTGT
GCATGCTTAATATTGGCAACTTTACCTATAGTCAAGACAAGACATGGCAT
TTGTCAGGATGAAACTTTAGTAACCAATCTCAGGACCACTTTTCCAATTC
ACAGATATCTTTTTGAACAACTAAAGAGTCTCTAATAGAATTGATTATTT
TCACTATCTTCGTATCGTCGGCAAAGAGAAATGCATCGGAGACTACCTTT
TCTGGCAAATCGTTTATGTAGATAACAAAGAGCAGAGGCCCAAGTACGCT
TCCTTGAGGAATTCCACTTATGACATGATCAGTAGTTGATTTAACTGAGT
TAACCTTGACTAGTTGCTTGCGGTCTGATAAAAACGCTGTAATCCATTTT
AACAGGTTTCCGCTGATCCCGTAACATTCTAGTTTCTTTATCAACCTCCT
GTGAAGAACTGTATCAAACGCTTTCGCAAAATCAAAGTAGACACACTCAA
CTACTTTTCCTTCTGACATTGATTCGCA

Coding sequence (CDS) from alignment at sc0000499:100477..101154

>TCONS_00024485 ID=TCONS_00024485|Name=TCONS_00024485|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000499:100477..101154 (Clytia hemisphaerica)
TCAGGACCACTTTTCCAATTCACAGATATCTTTTTGAACAACTAAAGAGT
CTCTAATAGAATTGATTATTTTCACTATCTTCGTATCGTCGGCAAAGAGA
AATGCATCGGAGACTACCTTTTCTGGCAAATCGTTTATGTAGATAACAAA
GAGCAGAGGCCCAAGTACGCTTCCTTGAGGAATTCCACTTATGACATGAT
CAGTAGTTGATTTAACTGAGTTAACCTTGACTAGTTGCTTGCGGTCTGAT
AAAAACGCTGTAATCCATTTTAACAGGTTTCCGCTGATCCCGTAACATTC
TAGTTTCTTTATCAACCTCCTGTGAAGAACTGTATCAAACGCTTTCGCAA
AATCAAAGTAGACACACTCAACTACTTTTCCTTCTGACATTGATTCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013750XLOC_013750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024485-exon-sc0000499-1491911889:100477..101154TCONS_00024485-exon-sc0000499-1491911889:100477..101154Clytia hemisphaericaexon
TCONS_00024485-exon-sc0000499-1510915933:100477..101154TCONS_00024485-exon-sc0000499-1510915933:100477..101154Clytia hemisphaericaexon
TCONS_00024485-exon-sc0000499-1575043694:100477..101154TCONS_00024485-exon-sc0000499-1575043694:100477..101154Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024485-proteinTCONS_00024485-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:100477..101154 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.332035	0.669597	1.51922	1.25533	1.57417	1.202	0.194718	0.815684	0.525689	0.784263	0.980569	0.367471	2.41581	1.77078	0.97761	1.42642	0.550038	0.644907	1.28043	2.01552	1.14037	0.978404	0.325466	0.910582	1.37208	1.43386	1.09397	1.652	0	0.273622
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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