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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024517 ID=TCONS_00024517|Name=TCONS_00024517|organism=Clytia hemisphaerica|type=transcript|length=1671bp
TTTCTAATTAGATTAGATTAGATTGATATCTTTTGCAGTTTTTGCAAGAT
TTTTTACATGTTGAAGTTGCAGTGAAGTTTTAAATTATATGAAGATGAAG
ACAATGTTACTGACGATACTTTTCGCACTTTTGGCTTTTGAAAAAGTACA
AGGAAGCTGTGTTCCACTGGGTAACGCTGGCTGTGAGGGAAACAATGGGA
GATGTTGTCGTGAAGGAAATCCATATACTGGCTCAATGAGAAAATGTGTC
AACGAAGGAAGTTTCTCGAGCCCAAAATATGTGTGTCGTGAAGCAAAAAG
AGATCCCTTAAGTGATTACTACCTTGGCCAATCTGCAAGAAGAGGGAGCT
GTATTCCACTGGGAAACGCTGGCTGTGAGGGAAACAATGGGAAATGTTGT
CGTGAAGGGAATCCCTATACTGGCTCAATGAGAAGATGTGTCAACGAAGG
AAGTTTCTCGAGCCCAAAATATGTGTGTCGTGAAGCAAAAAGAGATCCCT
TAAGTGATTACTACCGTGGCCAATTTACAAGAAGAGGAAGCTGTATTCCA
CTAGGAAACGCTGACTGTGAGGGAAACAATGGAAGATGTTGCCGTGAAGG
GAATCCCTATACCGGCTCAATGAGAAGATGTGTCAACGAAGGAAGTTTCT
CGAGCCCAAAATATGTGTGTCGTGAAGCAAAAAGAGATCCCTTAAGTGAT
TACTACCGTGGCCAATTTACAAGAAGAGGAAGCTGTATTCCACTAGGAAA
CGCTGACTGTGAGGGAAACAACGGGAGATGTTGTCGTGAAGGGAATCCCT
ATACTGGCTCAATGAGAAGATGTGTCAACGAAGGAAGTTTCTCGAACCCG
AAATATGTTTGTCGTGAAGCAAAAAGAGATCCCTTAAGTGATTACTACCG
TGGCCAATTTACAAGAAGACGAAGCTGTATTCCACTAGGAAACGCTGACT
GTGAGGGAAACAATGGGAGATGTTGCCGTGAAGGGAATCCCTATACCGGC
TCAATGAGAAGATGTGTCAACGAAGGAAGTTTCTCGAACCCAAAATATGT
TTGTCGTGAAGCAAAAAGAGATCCCTTAAGTGATTACTACCGTGGTCAAT
TTACAAGAAGAGGAAGCTGTATTCCACTGGGAAACGCTGGCTGTGAGGGA
AACAATGGGAGATGTTGCCGTGAAGGGAATCCCTATACCGGCTCAATGAG
AAGATGTGTCAACGAAGGAAGTTTCTCGAGCCCAAAATATGTGTGTCGTG
AAGCAAAAAGAGATCCATTTTCGGAGATGTTAGATTTCTACGCTTCGGAA
ATGACAAAGAGAGCTGGTTTGAGAAACATTTGAAccttttgaaactttca
aagaAACATAACTAAAAGATTGTAAAGTTTGATTATTGTCGTgtgtaatt
tttgtaatttttgttagattttcggaTTTTTGGATCACGATACTAGTGTC
AATaagtaatttctgtaatttttttctttgtaattttttgaatttttgtg
aaagtggtaaaaattaaataaacctCTTACACCTGTAGTCATTTGTCTAC
CAAATGTTAtagacgttttttttataagaacNcaatcaaggtcataatat
tttgataattttggttattttaacgtttttcaagatttaaagttccggcg
agaaagtcgattttgggctat Run BLAST on NCBI protein sequence of TCONS_00024517-protein >TCONS_00024517-protein ID=TCONS_00024517-protein|Name=TCONS_00024517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MKMKTMLLTILFALLAFEKVQGSCVPLGNAGCEGNNGRCCREGNPYTGSM
RKCVNEGSFSSPKYVCREAKRDPLSDYYLGQSARRGSCIPLGNAGCEGNN
GKCCREGNPYTGSMRRCVNEGSFSSPKYVCREAKRDPLSDYYRGQFTRRG
SCIPLGNADCEGNNGRCCREGNPYTGSMRRCVNEGSFSSPKYVCREAKRD
PLSDYYRGQFTRRGSCIPLGNADCEGNNGRCCREGNPYTGSMRRCVNEGS
FSNPKYVCREAKRDPLSDYYRGQFTRRRSCIPLGNADCEGNNGRCCREGN
PYTGSMRRCVNEGSFSNPKYVCREAKRDPLSDYYRGQFTRRGSCIPLGNA
GCEGNNGRCCREGNPYTGSMRRCVNEGSFSSPKYVCREAKRDPFSEMLDF
YASEMTKRAGLRNI Run BLAST on NCBI transcript from alignment at sc0000501:70883..72773- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024517 ID=TCONS_00024517|Name=TCONS_00024517|organism=Clytia hemisphaerica|type=transcript|length=1891bp|location=Sequence derived from alignment at sc0000501:70883..72773- (Clytia hemisphaerica)
TTTCTAATTAGATTAGATTAGATTGATATCTTTTGCAGTTTTTGCAAGAT
TTTTTACATGTTGAAGTTGCAGTGAAGTTAGTAGTCACTTTTCTTTTAAA
GATACACTACATATTGGCATTCGGCACTCGGCATCAAATCATTAATAATT
ATAGCACTAAGGAGACTAGTGAAGAACCTATAGGTAGGAGTCTCTCACCT
TCTTGTTATAGCAATATATCACCGTTGTTTAATCAAATGTACTGTTTGTA
ACACAGTTTAAGGATTATTATGAAAAATGTCAATTATTCTTTATAGGTTT
TAAATTATATGAAGATGAAGACAATGTTACTGACGATACTTTTCGCACTT
TTGGCTTTTGAAAAAGTACAAGGAAGCTGTGTTCCACTGGGTAACGCTGG
CTGTGAGGGAAACAATGGGAGATGTTGTCGTGAAGGAAATCCATATACTG
GCTCAATGAGAAAATGTGTCAACGAAGGAAGTTTCTCGAGCCCAAAATAT
GTGTGTCGTGAAGCAAAAAGAGATCCCTTAAGTGATTACTACCTTGGCCA
ATCTGCAAGAAGAGGGAGCTGTATTCCACTGGGAAACGCTGGCTGTGAGG
GAAACAATGGGAAATGTTGTCGTGAAGGGAATCCCTATACTGGCTCAATG
AGAAGATGTGTCAACGAAGGAAGTTTCTCGAGCCCAAAATATGTGTGTCG
TGAAGCAAAAAGAGATCCCTTAAGTGATTACTACCGTGGCCAATTTACAA
GAAGAGGAAGCTGTATTCCACTAGGAAACGCTGACTGTGAGGGAAACAAT
GGAAGATGTTGCCGTGAAGGGAATCCCTATACCGGCTCAATGAGAAGATG
TGTCAACGAAGGAAGTTTCTCGAGCCCAAAATATGTGTGTCGTGAAGCAA
AAAGAGATCCCTTAAGTGATTACTACCGTGGCCAATTTACAAGAAGAGGA
AGCTGTATTCCACTAGGAAACGCTGACTGTGAGGGAAACAACGGGAGATG
TTGTCGTGAAGGGAATCCCTATACTGGCTCAATGAGAAGATGTGTCAACG
AAGGAAGTTTCTCGAACCCGAAATATGTTTGTCGTGAAGCAAAAAGAGAT
CCCTTAAGTGATTACTACCGTGGCCAATTTACAAGAAGACGAAGCTGTAT
TCCACTAGGAAACGCTGACTGTGAGGGAAACAATGGGAGATGTTGCCGTG
AAGGGAATCCCTATACCGGCTCAATGAGAAGATGTGTCAACGAAGGAAGT
TTCTCGAACCCAAAATATGTTTGTCGTGAAGCAAAAAGAGATCCCTTAAG
TGATTACTACCGTGGTCAATTTACAAGAAGAGGAAGCTGTATTCCACTGG
GAAACGCTGGCTGTGAGGGAAACAATGGGAGATGTTGCCGTGAAGGGAAT
CCCTATACCGGCTCAATGAGAAGATGTGTCAACGAAGGAAGTTTCTCGAG
CCCAAAATATGTGTGTCGTGAAGCAAAAAGAGATCCATTTTCGGAGATGT
TAGATTTCTACGCTTCGGAAATGACAAAGAGAGCTGGTTTGAGAAACATT
TGAACCTTTTGAAACTTTCAAAGAAACATAACTAAAAGATTGTAAAGTTT
GATTATTGTCGTGTGTAATTTTTGTAATTTTTGTTAGATTTTCGGATTTT
TGGATCACGATACTAGTGTCAATAAGTAATTTCTGTAATTTTTTTCTTTG
TAATTTTTTGAATTTTTGTGAAAGTGGTAAAAATTAAATAAACCTCTTAC
ACCTGTAGTCATTTGTCTACCAAATGTTATAGACGTTTTTTTTATAAGAA
CNCAATCAAGGTCATAATATTTTGATAATTTTGGTTATTTTAACGTTTTT
CAAGATTTAAAGTTCCGGCGAGAAAGTCGATTTTGGGCTAT Coding sequence (CDS) from alignment at sc0000501:70883..72773- >TCONS_00024517 ID=TCONS_00024517|Name=TCONS_00024517|organism=Clytia hemisphaerica|type=CDS|length=1245bp|location=Sequence derived from alignment at sc0000501:70883..72773- (Clytia hemisphaerica)
ATGAAGATGAAGACAATGTTACTGACGATACTTTTCGCACTTTTGGCTTT
TGAAAAAGTACAAGGAAGCTGTGTTCCACTGGGTAACGCTGGCTGTGAGG
GAAACAATGGGAGATGTTGTCGTGAAGGAAATCCATATACTGGCTCAATG
AGAAAATGTGTCAACGAAGGAAGTTTCTCGAGCCCAAAATATGTGTGTCG
TGAAGCAAAAAGAGATCCCTTAAGTGATTACTACCTTGGCCAATCTGCAA
GAAGAGGGAGCTGTATTCCACTGGGAAACGCTGGCTGTGAGGGAAACAAT
GGGAAATGTTGTCGTGAAGGGAATCCCTATACTGGCTCAATGAGAAGATG
TGTCAACGAAGGAAGTTTCTCGAGCCCAAAATATGTGTGTCGTGAAGCAA
AAAGAGATCCCTTAAGTGATTACTACCGTGGCCAATTTACAAGAAGAGGA
AGCTGTATTCCACTAGGAAACGCTGACTGTGAGGGAAACAATGGAAGATG
TTGCCGTGAAGGGAATCCCTATACCGGCTCAATGAGAAGATGTGTCAACG
AAGGAAGTTTCTCGAGCCCAAAATATGTGTGTCGTGAAGCAAAAAGAGAT
CCCTTAAGTGATTACTACCGTGGCCAATTTACAAGAAGAGGAAGCTGTAT
TCCACTAGGAAACGCTGACTGTGAGGGAAACAACGGGAGATGTTGTCGTG
AAGGGAATCCCTATACTGGCTCAATGAGAAGATGTGTCAACGAAGGAAGT
TTCTCGAACCCGAAATATGTTTGTCGTGAAGCAAAAAGAGATCCCTTAAG
TGATTACTACCGTGGCCAATTTACAAGAAGACGAAGCTGTATTCCACTAG
GAAACGCTGACTGTGAGGGAAACAATGGGAGATGTTGCCGTGAAGGGAAT
CCCTATACCGGCTCAATGAGAAGATGTGTCAACGAAGGAAGTTTCTCGAA
CCCAAAATATGTTTGTCGTGAAGCAAAAAGAGATCCCTTAAGTGATTACT
ACCGTGGTCAATTTACAAGAAGAGGAAGCTGTATTCCACTGGGAAACGCT
GGCTGTGAGGGAAACAATGGGAGATGTTGCCGTGAAGGGAATCCCTATAC
CGGCTCAATGAGAAGATGTGTCAACGAAGGAAGTTTCTCGAGCCCAAAAT
ATGTGTGTCGTGAAGCAAAAAGAGATCCATTTTCGGAGATGTTAGATTTC
TACGCTTCGGAAATGACAAAGAGAGCTGGTTTGAGAAACATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024517-exon-sc0000501-1575043694:72698..72773 | TCONS_00024517-exon-sc0000501-1575043694:72698..72773 | Clytia hemisphaerica | exon |
| TCONS_00024517-exon-sc0000501-1575043694:70883..72477 | TCONS_00024517-exon-sc0000501-1575043694:70883..72477 | Clytia hemisphaerica | exon |
| TCONS_00024517-exon-sc0000501-1510915933:72698..72773 | TCONS_00024517-exon-sc0000501-1510915933:72698..72773 | Clytia hemisphaerica | exon |
| TCONS_00024517-exon-sc0000501-1510915933:70883..72477 | TCONS_00024517-exon-sc0000501-1510915933:70883..72477 | Clytia hemisphaerica | exon |
| TCONS_00024517-exon-sc0000501-1491911889:72698..72773 | TCONS_00024517-exon-sc0000501-1491911889:72698..72773 | Clytia hemisphaerica | exon |
| TCONS_00024517-exon-sc0000501-1491911889:70883..72477 | TCONS_00024517-exon-sc0000501-1491911889:70883..72477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000501 | supercontig | sc0000501:70883..72773 - |
Blast
The following BLAST results are available for this feature:
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