|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024524 ID=TCONS_00024524|Name=TCONS_00024524|organism=Clytia hemisphaerica|type=transcript|length=881bp
AAAACTGAGAGCGCTTATATCCAGTCTCGCCTCGCATGAGACATTTGTAT
GTCTTGGTAGATCTTCGTTATTAAGTTCGTTTAATAGGGGTTCAGTTCTT
ACATCTACGAACACTTCTCCTAGCAATTTGGATGTAATGTCTCTAATTTC
ATTGTGTCTCAAAGACACGAATCCTCCCTTCTTGCACGAGAGCGCGTGTG
CTAGATCGAACGATGATCCGCACGCGCAAGTTGATGGGAGTCGGTCGAGA
GGCACGTTGTATCGAATTCTGATGGCATCCCAAAACTCTTGCTTGGTCAG
CTCGAAACCTTGTTCCTTCAAAGGGATGGATGTCAGCCAATTTGAAGCAC
CTTTTTGATTGAGCGTCTCCATCGTTCGTTTGGTGTTGATGTCGGCTGTC
TCCAAGAAAGCTCGTAGCTTTTCCTGGTGACGTTGCTGCCGTTCGTTATG
AAGACGAGACTTAGATTTCGCTTCGGGTGCACCATCGTTTGCTTGAAGGA
TTTGATTCTGCAGTGCCACGGTTGCACTCATCGAGTCTCTGTGATCGTGG
CTCGATTCTTCGGCGTAGATTTTCAGTCCCATTCCGCCGAGATGTGGAGG
TAAGGAAAGCATTATTCTTTCCTGGTCGTTGATGATGCGTCCACCAGTTA
GTGATGGAATCAGTCGGTGCCTCACAGCTTCGTCGACTCTTTTCAGCTCG
TCATTGATTGTTGGGATGGTGCGTAGGAAGTACGTCAGCTTATGTTGGTA
GCTGCTGACGTAGGCTGAGTAGGCTGCTTGTGGATAAGTTGCTGCGATTT
TAGCAAGAAGATTAATCTCCTGGGTCCATTCGTCGATCTTTTGGTTGATG
TACTGACTTTTCAgtatttttgagatatttt Run BLAST on NCBI protein sequence of TCONS_00024524-protein >TCONS_00024524-protein ID=TCONS_00024524-protein|Name=TCONS_00024524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
NISKILKSQYINQKIDEWTQEINLLAKIAATYPQAAYSAYVSSYQHKLTY
FLRTIPTINDELKRVDEAVRHRLIPSLTGGRIINDQERIMLSLPPHLGGM
GLKIYAEESSHDHRDSMSATVALQNQILQANDGAPEAKSKSRLHNERQQR
HQEKLRAFLETADINTKRTMETLNQKGASNWLTSIPLKEQGFELTKQEFW
DAIRIRYNVPLDRLPSTCACGSSFDLAHALSCKKGGFVSLRHNEIRDITS
KLLGEVFVDVRTEPLLNELNNEDLPRHTNVSCEARLDISALSF Run BLAST on NCBI transcript from alignment at sc0000501:115777..116657 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024524 ID=TCONS_00024524|Name=TCONS_00024524|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at sc0000501:115777..116657 (Clytia hemisphaerica)
aaaatatctcaaaaatacTGAAAAGTCAGTACATCAACCAAAAGATCGAC
GAATGGACCCAGGAGATTAATCTTCTTGCTAAAATCGCAGCAACTTATCC
ACAAGCAGCCTACTCAGCCTACGTCAGCAGCTACCAACATAAGCTGACGT
ACTTCCTACGCACCATCCCAACAATCAATGACGAGCTGAAAAGAGTCGAC
GAAGCTGTGAGGCACCGACTGATTCCATCACTAACTGGTGGACGCATCAT
CAACGACCAGGAAAGAATAATGCTTTCCTTACCTCCACATCTCGGCGGAA
TGGGACTGAAAATCTACGCCGAAGAATCGAGCCACGATCACAGAGACTCG
ATGAGTGCAACCGTGGCACTGCAGAATCAAATCCTTCAAGCAAACGATGG
TGCACCCGAAGCGAAATCTAAGTCTCGTCTTCATAACGAACGGCAGCAAC
GTCACCAGGAAAAGCTACGAGCTTTCTTGGAGACAGCCGACATCAACACC
AAACGAACGATGGAGACGCTCAATCAAAAAGGTGCTTCAAATTGGCTGAC
ATCCATCCCTTTGAAGGAACAAGGTTTCGAGCTGACCAAGCAAGAGTTTT
GGGATGCCATCAGAATTCGATACAACGTGCCTCTCGACCGACTCCCATCA
ACTTGCGCGTGCGGATCATCGTTCGATCTAGCACACGCGCTCTCGTGCAA
GAAGGGAGGATTCGTGTCTTTGAGACACAATGAAATTAGAGACATTACAT
CCAAATTGCTAGGAGAAGTGTTCGTAGATGTAAGAACTGAACCCCTATTA
AACGAACTTAATAACGAAGATCTACCAAGACATACAAATGTCTCATGCGA
GGCGAGACTGGATATAAGCGCTCTCAGTTTT Coding sequence (CDS) from alignment at sc0000501:115777..116657 >TCONS_00024524 ID=TCONS_00024524|Name=TCONS_00024524|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at sc0000501:115777..116657 (Clytia hemisphaerica)
aatatctcaaaaatacTGAAAAGTCAGTACATCAACCAAAAGATCGACGA
ATGGACCCAGGAGATTAATCTTCTTGCTAAAATCGCAGCAACTTATCCAC
AAGCAGCCTACTCAGCCTACGTCAGCAGCTACCAACATAAGCTGACGTAC
TTCCTACGCACCATCCCAACAATCAATGACGAGCTGAAAAGAGTCGACGA
AGCTGTGAGGCACCGACTGATTCCATCACTAACTGGTGGACGCATCATCA
ACGACCAGGAAAGAATAATGCTTTCCTTACCTCCACATCTCGGCGGAATG
GGACTGAAAATCTACGCCGAAGAATCGAGCCACGATCACAGAGACTCGAT
GAGTGCAACCGTGGCACTGCAGAATCAAATCCTTCAAGCAAACGATGGTG
CACCCGAAGCGAAATCTAAGTCTCGTCTTCATAACGAACGGCAGCAACGT
CACCAGGAAAAGCTACGAGCTTTCTTGGAGACAGCCGACATCAACACCAA
ACGAACGATGGAGACGCTCAATCAAAAAGGTGCTTCAAATTGGCTGACAT
CCATCCCTTTGAAGGAACAAGGTTTCGAGCTGACCAAGCAAGAGTTTTGG
GATGCCATCAGAATTCGATACAACGTGCCTCTCGACCGACTCCCATCAAC
TTGCGCGTGCGGATCATCGTTCGATCTAGCACACGCGCTCTCGTGCAAGA
AGGGAGGATTCGTGTCTTTGAGACACAATGAAATTAGAGACATTACATCC
AAATTGCTAGGAGAAGTGTTCGTAGATGTAAGAACTGAACCCCTATTAAA
CGAACTTAATAACGAAGATCTACCAAGACATACAAATGTCTCATGCGAGG
CGAGACTGGATATAAGCGCTCTCAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024524-exon-sc0000501-1491911889:115777..116657 | TCONS_00024524-exon-sc0000501-1491911889:115777..116657 | Clytia hemisphaerica | exon |
| TCONS_00024524-exon-sc0000501-1510915933:115777..116657 | TCONS_00024524-exon-sc0000501-1510915933:115777..116657 | Clytia hemisphaerica | exon |
| TCONS_00024524-exon-sc0000501-1575043694:115777..116657 | TCONS_00024524-exon-sc0000501-1575043694:115777..116657 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000501 | supercontig | sc0000501:115777..116657 . |
Blast
The following BLAST results are available for this feature:
|
