TCONS_00024542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024542
Unique NameTCONS_00024542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024542 ID=TCONS_00024542|Name=TCONS_00024542|organism=Clytia hemisphaerica|type=transcript|length=3582bp
ACTACTAAAAAAGGGGGAATTGATTAATGTAAGATGTTGAGCAAGTAGAT
AAAAAGCAAATTATCACAATCatttcaccttaaagaaaaaatcaatatcT
CGTTGAGGAAATCGTTATCATTAAACATTTTCTTTACATTTAGAGGAATa
agagaaaataataaaaactaaAGCAAGATGGATTCGAGTGAAATTAAAGT
GAAAATTGAACCCGAAAGTGAAGGAATGATTTCTGAAGAACagcaagaag
caaaagaagATACATCAATGGAAAATCCTGTTGAAGGAAATTTTGACATT
CCTCTTGATGAAAAGATATTGGAAGCTGAACAGCCTGACGAAGCTCCTCC
TTCAGAAGACACCATTCTAGACGAACAAGCGACCAACGCAGATGAAGCGG
TCGTCAAAAAGGAAGAAACTGAAGAAACNCTAGACGAACAAGCAACCAAC
GCAGATGAAGCGGTCGTCAAAAAGGAAGAAACTGAAGAAACATCGAAAGA
AGAAGCTCAGCCAGAAGCAGTGGTTGATCAAGAAATGTCTCAAGAAAGTA
CTGCCTCTATCGAACCTGGGGAATTACCCGTTCAAAACGAAGGTCAAGTG
AGCCAAGACACAGACATGAATGTGTTGGAAGCCATCTTAGGTGATGGAGA
TGAAGCAAAAGATGATTTTGATAACGAAATTGCAAACACTAACAGCGCTA
AGAAAGtaAAAGCAGCGACAGCGACCCCTAAGACGAGGAAAACACCAAAA
CGAAAGACAAAGAAACCGACCAAAGCAGCTGCAGCTAAAAATGGAACTGC
ATCTCCAGTGTCAAAGATAGAGAGTGCCTCCGCCAACAATGCTACTCCTG
ATGCTCCCAAAGATGAAATCAAACCTTCGCCTGCAAAGAAAGCAAAACTG
AAAACGACAGCACCTGCTTCAACCACTGATAATGTCGTGAGTGATGCCAC
TACCAAAGACTCCTCTGCTGTTGCTACGACAACTACACCTGGCAAGAAAG
CTGCCaccaaaacacaaaagaaaaagaaagtggcAACGAAGGCGGCGGTG
AAGAAGGAAACCAAAAAACCGGACACTGAAACAAATGCTCAACCCACGGA
GGCCGAAAAAGAAGCAGAACTTGAGAAAAAAGTCAAGGAGCTAGAGAAAA
TAGTTAAGTCAGCACCTGTCGTCGCTCCAACTGCTGATGAAAGCAAAACT
GATGCCACCAAAGTGAAGAAGGATAAAGCTCCCAAAGCGTCACCTGCTAC
CAGGAAACGAAAAGCAAGTGATAGCGCACTAAACACTTCAAAGACTAAAG
CCAACACCTCCGTCTCTGAGGTAATGGAGGAGAAACCATTAGAAGAAGAA
GTagaagaacaagaagaagagGCCATTGAAGACGAGGAATTTTTGGACGA
AGAGAACATTTTGAACGAAgaggaagatgaagaagaagatgctGACATGA
AAGTGGTGGATGGCTTCTCTGATCACGATGGAAGCGTGTCCGATCATGGA
AGCTCTTTCTCTTACTCACGATCGCGATCATTGTCGGGAAGCTTCTCCGT
GGAATTATCAAATTTCTCTGGATCCTCCTCACTTGACGACTTGGAAGATG
ACGGAGAAGGTGAcgagaaaaagaaaacgaaaaggaagaaaaaacaCCCA
AGTGACGAGAAGCACAAAGAGTTGGTGGATCAAATGTTGAAAGGGGCAAG
ATACTTCATCATCAAAAGCAATAATTATGAAAACGTTTCACTTTCAAAAG
CAAAGGGCGTATGGGCGACACCGCCTGCCAACGAGCGAAAATTGAACGAT
GCTTTCAAGCATTCAACGAACGTTGTCTTGGTCTTCAGCGTCAAAGAAAG
CGGTCGTTTTCAAGGCTTCGCGCGTCTTGCATCCGAATCACGTCATGATG
GCATCCCCGTCCCTTGGGTCCTTCCACCAGGTTTCGATCGTCGAATTTTA
GGTGGAACGTTCAAGGTTGACTGGTTAAACAGgaAAGAAGTGACTTTTTC
CAAATGCGCAAACCTCAGGAACCCTTGGAACGAAAATAAggaagtgaaaa
tttgtcgTGACGGACAGGAGCTTGAACCGAGTGTTGGTGAAGTGTTGTGC
CGAATGTTTGAAGATGATCTGACCATTAATCTCGAACGAATACAACGTCA
TGCAAAACGATATAAAAGTGGTGGCGGTGATCATAAACCTGACAGATTCC
GTGGTGGTGGCGACTGGAGAGGTGGACGTGGTGGTTTTAATAGGGGTGGA
CGAGGTGGAAGGGGTGGAGGGCGTTTCCAAAGAAACAGAAGAGGCGGAGG
CGTAGGTGTAGGCGGTGGAGATTTTCGTCGTAGAAGAGGCGATGGTGGTC
ATCATCACAATGGAGGTCGTTTCGGAGGTGGTCGCGGTGGCATGGATCGC
CATCGAGGGCATCGGGACAACAATCGGCACGATCACAGACGACAACAAGG
CAATAATTTCATGCGGCAACAACGTTCACGATCGCCCGATCACAGGAGAT
ACGAGCGTGAAAATCGTGACCGAAGACACAAAGACCGCGTTCGAGAATTT
TTAAAGGAAGACAGGTCGAAATACGGGGTACGCGAAGAGACACTTTTACA
CGGTTCATATTCTGATTACGTTCGCGAGTTTCGTCAAAAGCAAATGGGAA
GCTCTTCCTCTTCGCACAGGAATTCTTCTTCGTATTATGGTTCATCATCA
AGTTACGGTGGATCACACAGTAGATCGTACGATGCGAACGCAGCCTCAGC
GGAGGAGTTTTTACGCCGCTCATCACATCGATGATGACGAGACCTCCAAA
agattggaagaaaaaaaaacgaaaatccaaAACCTTTTAGCTGTAAGATT
GGAGTtgttcttcaaaaatgtttgcGAAGAGTTTGTTTTCTAAAAGGTTG
TTCATTTCATGGCTTTCCTTGGAAGTGTCAATCCCTTCTTCAACACCAAA
TACTTGTTTGTCAGAAAAAGTGAGAGAAGAATGAACACGTTGTTACCGCT
CAATGTCTAAATGTTGgctattttttaatgaaagaaatgttgttacttta
ctttttttatgtttttaaactttttttgtacCGGATTTAATGCTTTAGAA
GCACTCGTTGAAAAATTATCTTTGTCATTGTGACGACTGTTGTAAacgtg
attgaaattgattcaaAACCGACATGGACAGTATTAAAAAAACGTCGGCA
GAACGATAGTGTACAGATAGTTTTTATTATTGTACGGGGGACTCTCGCTA
ATTTGAATTACCATTGTTAGtctctttgtaattcgaattctTCTCAGTCC
CACAAAGTGGAGGCCTTGATAAGTTAACAAAATTTATTTCCTTATTCAAA
TCTCAACGGTAATCGGAACAAATCAGATTTCAAGTTCGAATTAACGAGAG
CCAACAGTATCTTAGggtatattatttttcttttcattttagaGTTTACA
TTTTATTAGTAGACTTCACACCCTTAAAAGATTTTTGGACAAAGTGTAAG
AATTATGAACAAGTAAAGAGAGcgactttttagaaaaaaattctgaCTAT
TCCATAGAGCATTTTGACAAACAATTCTTGAC
Run BLAST on NCBI

transcript from alignment at sc0000502:89956..99093-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024542 ID=TCONS_00024542|Name=TCONS_00024542|organism=Clytia hemisphaerica|type=transcript|length=9138bp|location=Sequence derived from alignment at sc0000502:89956..99093- (Clytia hemisphaerica)
ACTACTAAAAAAGGGGGAATTGATTAATGTAAGATGTTGAGCAAGTAGAT
AAAAAGCAAATTATCACAATCATTTCACCTTAAAGAAAAAATCAATATCT
CGTTGAGGAAATCGTTATCATTAAACATTTTCTTTACATTTAGAGGAATA
AGAGAAAATAATAAAAACTAAAGCAAGATGGATTCGAGTGAAATTAAAGT
GAAAATTGAACCCGAAAGTGAAGGAATGATTTCTGAAGAACAGCAAGAAG
CAAAAGAAGATACATCAATGGAAAATCCTGTTGAAGGAAATTTTGACATT
CCTCTTGATGAAAAGATATTGGAAGCTGAACAGCCTGACGAAGCTCCTCC
TTCAGAAGACACCATTCTAGACGAACAAGCGACCAACGCAGATGAAGCGG
TCGTCAAAAAGGAAGAAACTGAAGAAACNCTAGACGAACAAGCAACCAAC
GCAGATGAAGCGGTCGTCAAAAAGGAAGAAACTGAAGAAACATCGAAAGA
AGAAGCTCAGCCAGAAGCAGTGGTTGATCAAGAAATGTCTCAAGAAAGTA
CTGCCTCTATCGAACCTGGGGAATTACCCGTTCAAAACGAAGGTTTGCCT
TTATTGCTTTTTGTGAGTCTTTCGTATTTTTCATGGAATAGACTTGTTTG
GGCTGGTTTGAGACATACTCCAGCATCACTTTCAACTGCCATACAAAAGT
TTTTGTTCGACCAAATTATGTCAGTCCTAGTAAAGTTGCTATAACAATTG
AAAAACCTTTGACTCTATGTTTTTTGCAGGTCAAGTGAGCCAAGACACAG
ACATGAATGTGTTGGAAGCCATCTTAGGTGATGGAGATGAAGCAAAAGAT
GATTTTGATAACGAAATTGCAAACACTAACAGCGCTAAGAAAGGTATCAT
TAAAATGTATAAATCCCAGAAGGCTTAAACAGTCCTCACAATTACTAAAC
ATTTTGACAAACACTGCTGCAAATAGAACATCTGGTCTCTAAAACACAAA
AAAACATCTGTCAAAAAAAGTTTTTCATTTTTATAGTAAAAGCAGCGACA
GCGACCCCTAAGACGAGGAAAACACCAAAACGAAAGACAAAGAAACCGAC
CAAAGCAGCTGCAGCTAAAAATGGAACTGCATCTCCAGTGTCAAAGATAG
AGAGTGCCTCCGCCAACAATGCTACTCCTGATGCTCCCAAAGATGAAATC
AAACCTTCGCCTGCAAAGAAAGCAAAACTGAAAACGACAGCACCTGCTTC
AACCACTGATAATGTCGTGAGTGATGCCACTACCAAAGACTCCTCTGCTG
TTGCTACGACAACTACACCTGGCAAGAAAGCTGCCACCAAAACACAAAAG
AAAAAGAAAGTGGCAACGAAGGCGGCGGTGAAGAAGGAAACCAAAAAACC
GGACACTGAAACAAATGCTCAACCCACGGAGGCCGAAAAAGAAGCAGAAC
TTGAGAAAAAAGTCAAGGAGCTAGAGAAAATAGTTAAGTCAGCACCTGTC
GTCGCTCCAACTGCTGATGAAAGCAAAACTGATGCCACCAAAGTGAAGAA
GGATAAAGCTCCCAAAGCGTCACCTGCTACCAGGAAACGAAAAGCAAGTG
ATAGCGCACTAAACACTTCAAAGACTAAAGCCAACACCTCCGTCTCTGAG
GTAATGGAGGTAAAACCATCAGTTATCACATCTTTAAATGGTTCAATGTA
AATTTCCTCAGTAATATAGGTGATTGAATATCTTCTCTTCCCAATATATC
CTAAAAATCTTGCAGATAGATTTTTGTACAAAATGAATGTTTATCATTTT
TATGTTTGCAGGAGAAACCATTAGAAGAAGAAGTAGAAGAACAAGAAGAA
GAGGGTGAGCTAACTTTTGCGTTCTACCAAGTGTTTTAAGCTTGTTTGCT
TTAGATTCTCCGTCGTTCTCAGTCATGACCTTCCCATAGGACAAAAAATT
CTCTAGGCTACCAGCGAAAACATCTGACGAAAGTGTTAACTGATTTACCC
AGCAAGATATTGCATTTCACATCGAGAAATATTCTCAGTAAAAATCAAAG
TTTAGAAATGTTTTTTTTTTTGGGAATATAATTTTTTTTTTTAACTGTAA
GTTCCGATACGGGCAGTATAAAAACGAAGATGACCTAGTTATCAGTTTGA
ACACACATAACACACAAATGGAAAAAAAAAAAAACATTTTTAAAAATTTT
TTTTTTTAACTGTAAGTTCCGATACGGGCAGTATAAAAACGAAGATGACC
TAGTTATCAGTTTGAACACACATAACACACAAATGGAACAAAGAACAAAA
ACTCTTCATTTCAGCCATTGAAGACGAGGAATTTTTGGACGAAGAGAACA
TTTTGAACGAAGAGGAAGATGAAGAAGAAGATGCTGACATGAAAGTGGTG
GATGGCTTCTCTGATCACGATGGAAGCGTGTCCGATCATGGAAGCTCTTT
CTCTTACTCACGATCGCGATCATTGTCGGGAAGCTTCTCCGTGGAATTAT
CAAATTTCTCTGGATCCTCCTCACTTGGTGAGTACCCTTGCTTTGAACGA
TTCTTTTGTGAACAGGTCTCAAATTGGTTGAATGGGGCTGTTGCGAAGAG
GTTCAAAAAGGCTTTCGAGGACAGAGTTGAAATTAAACCATAATCATTAT
AAAATACTCTGGTCTTGAATGTTTTTGTTTCTTTCTATTGTTTATAACAG
TTAGAGCTTTATTTCGTGAATGGATTTGTTTTGCACAGTTTTTGATCATG
TAACTAGACATTTTGACAATAAAGCTATAATGATATATTACCAGACTGGA
GTTTTAAAAATAATTGAACACACATTTGTTTTGCAGACGACTTGGAAGAT
GACGGAGAAGGTGACGAGAAAAAGAAAACGAAAAGGAAGAAAAAACACCC
AAGTCAGTACACTCTTTTCCACATTGTGGCATACTCCTAATCCTTTTTCA
ACAAAGTCGCTTCTAATACTTCCAGGATACCAAAAAGCATCAAGTAGCTA
AATGCTCAGAACGCATCGCGACTTTTTATTTCAAAACTCTAGATTTGACC
CGGCTTTTATGTACGTTTTCATGCGAAACTTAGCTTGCGAATACTTTTAA
AATGCACGTTACAACAACTTTGCAATCATCCCCTTTTTTCCCCGTGACGT
TTCCTCTTGCAGGTGACGAGAAGCACAAAGAGTTGGTGGATCAAATGTTG
AAAGGGGCAAGATACTTCATCATCAAAAGCAATAATTATGAAAACGTTTC
ACTTTCAAAAGCAAAGGTACATAAGATTTTTACAAATCGAATGTATTAAA
CATCTTAGTTAATCATTTCTTTGGCGTCAACACAAAGAGAATTTCCACAA
CCTCCTGATGTCGGGAAAAAAACGAACAAAATACTGGCTTTTTCATCAAG
TATTTGATTTTCATACATTTTGGTTCTAGAAACTTCAAAGTCGATTACTT
AGAACTAGGCCAGAGTTTTCTGCTAAATTTCATTTTCATTCTCTGCTTTT
TCTGAGTAAAGGCAATACCGAACGGATGTCTTTTAATCAATATTTTTCTT
CCCTCCTTCAATTTCAGGGCGTATGGGCGACACCGCCTGCCAACGAGCGA
AAATTGAACGATGCTTTCAAGGTATGTAGACAAAATTTGATTAAAAACCT
TTTTTTTAAACCGATTTGATTAAAAAAACCTTTGACGTAACGTTTTGAAA
TTTTCCTGTTTATCTTTAGGTATTTACTTGCCAGTGCTGATAGGTCGTTT
TCACGTATGTAGTTTTCTTGTTTTATTCTTCCGCCACTTCTTTCTTTCAG
CATTCAACGAACGTTGTCTTGGTCTTCAGCGTCAAAGAAAGCGGTCGTTT
TCAAGGCTTCGCGCGTCTTGCATCCGAATCACGTCATGATGGCATCCCCG
TCCCTTGGGTCCTTCCACCAGGTTTCGATCGTCGAATTTTAGGTGGAACG
TTCAAGGTTGACTGGTTAAACAGGTACATGGTCTTCTTAACAAATCTCTA
TTCTAAAAGTGTAATGAGTGGTAAAAGCATTTTTAGCCATTGACAATACA
AGCAATGAATTAGCACGTTTTTACACAATATCTTTCTTCTTTTCAGGAAA
GAAGTGACTTTTTCCAAATGCGCAAACCTCAGGAACCCTTGGAACGAAAA
TAAGGAAGTGAAAATTTGTCGTGACGGACAGGTATGTTTTACAGTAAACT
AATGGTGGTCTATAACAATCTGATGCAGTAAATCGTAACATTTCTCCAGA
TAAGATTATGTACGAACACGAAAACTCTCGTTATAAAGTTTCTCGTTTTC
ATGACTGAAAGACGGCTTAAATATTAAAACAAGTAAGGGAGCCATAATTT
CTTATTCAAAGAGCCTTTTCTGATGCAAGACGAATGTTATGACCCTTTGC
AACTTGCATAATTGTACTCTCCTCCTCTTTTCATTTGCCATAGGAGCTTG
AACCGAGTGTTGGTGAAGTGTTGTGCCGAATGTTTGAAGATGATCTGACC
ATTAATCTCGAACGAATACAACGTCATGCAAAACGATATAAAAGTGGTGG
CGGTGATCATAAACCTGACAGGTTCCTCTCCCTCTCTTTATCTTTCCGTG
TTATTTAACTGGCTTCCCTACTTCGTAGAAAGATAGCATCAAGTCCTAGT
CACTAAGTCACTAAGATAAAAGTTTAGTTTAAGAAGGTGATCTTTTCTAT
GGAGGCTTTCTACCTTTCATTTTGCTTTCTTTTATTTGTGCTTGGGGTAG
TGAAGCTGTACTGTAAGAAGTTGCACCTTACCCCGGGAGAGAAATTTTTA
GTTTTCCCCATTTATACTGAAAATCAGTAAAAATATTAACACACTTTCAA
ACTTTGCCAAAGCCTTTAGGCCGTGGGTGCTATTTATCGACTCATCCTCT
GTCACGGGTATGAAGTAAGCTCAGTTTCGGAAAGGATCAGTTTATTTCAG
AAAGTTGTAGTTTAGTTCGGAATTTCTTTTTTTTTTTGTTCTATTAAATT
TGTTTGGGTGATGGTTTTGCGTTAAGATGTTGGTTGAATATGATCCGTTG
ACACATTTTCTTGTATATTACACAGGTTACCTTCTTGTGCGTTCATCACA
AACCTCATCTACTACTTCAACAAAAATGAACTTTTAATGAGAAATTTTAT
CACATAGTCCTCTATGAGAACTTTATTTACAAAGTACCACATAAAAAGTG
TGCGTGTTAAAATCGTTCGCTCGGTTACAAATAGGACTAATTGTCTTTGA
GATAATATGTTACGATGCATGTTGTTAGAGTGCTCTTTATACCTCAAATG
AACTTTCCCATACGATAAAAAGTGAAATATCACTCATATGTTGGCGTTCA
GTCAACAAGACTGTCAAATTTACCGGTTGATACAACCTTTACCGCACAGA
GTTTCCGGTGCTTTATCAAACCTGTTACGTGTATGAACTTTTATTGCAGA
AGTTTGTTTTGAAATGGCCCACCTAAAGTGCCATTCGGGGTATTAATAAT
GAACTTTTTACTAGCTTTAACTTGTATAATGTGATGGTGTATCACTGCAA
TCGTATTATGCTGTAGTGACGTTGTACCCTATTTTCGACAGTTCAAAGCT
TGTTGGAGTTGGTGGAGGCTCACGTCAGTGTTCAGCGATATTAGAGTTTG
AACAACTGTAACAGAGTACGACCATCCATTTGCATTGCATAAGTTTTATG
GAAGATAATTCAAGCGGCGTGGAAGAATGGTGTTTTGGTTGTTTTATCCA
GAGAAATTTTCATTCAAGTTCGAGTTCAACCATTTTCGGGTTTTCCTTAA
AAGTGTTCTTAAGAAAAAAAGAACTTTTGAACTGGTGATTGGATTATTCT
TAAGCAATACTTTGCAAGCTAATACAGACTTTTTATATGGCAATCAACAT
AGATTACTTGGTATTGCTAGTACACAGGTAGTATCATTTGCTACGCGGTT
CCGACTATTCGTCTTTTTCAATTCTTTTAGTTTTCCCAAGAGACCATCAA
CGCTTTGCTATTTGTTGCAGGCCTCAATAAAATTATGGGAAAATAACCTT
TTGGTGTCTTCGTAACAGTTTTAAAACAATTGAGGTCTGCTCTTGGGAAT
TCTAATTCGTCTTTGAGAAACTGATCTTAAGCAAGCAAATTTAACTTAAA
GGAAGGAATTTGGCGGAAAGAAATTTTGTGGATTTCACGAAGTAGCTATA
TCCGCCAAAATAAATCGCCGTCAAATTTTATTTATTTCATGCGTTCTCGA
TAGCGAAAGATATCCGCAAAATTCATTCTTCCAAGCTATCTGACAAATTT
AAGTTTCTCAAAAAATTCTCGATCATCCGTCTGAGTGAATTCCCGCCAAT
AGTTTTTCCTTTAAGGTAATGTCTTCTATAAGGCCTGCTTTCGATGAGTT
CAGAAATAAGTGTTGACATCTTTCAGAGAACGTCCGACTATCATGCTCAA
GTATCGTTTCAGATTCCGTGGTGGTGGCGACTGGAGAGGTGGACGTGGTG
GTTTTAATAGGGGTGGACGAGGTGGAAGGGGTGGAGGGCGTTTCCAAAGA
AACAGAAGAGGCGGAGGCGTAGGTGTAGGCGGTGGAGATTTTCGTCGTAG
AAGAGGCGATGGTGGTCATCATCACAATGGAGGTAAGTGAAAAACATATT
TTCAACTCTTCTCGAATTCTCCTCGAATTTTAAATTTTCTTTCAAAGGAA
TTCATTTCTATCTGGGTGTGGCTTTCTTTTATTTCATTGTGGGGACTGAC
CTTGTACGGGACTCAGAATGAGAGAAAGTGAAAACAGATAAATTGATTAT
CCAAGAGACATCAGAAACATACTTCTTCAAACTAACGTGTTTTTTTTTTA
ATTTTTCAAAATGAAATACAAACAGAGGCATCGATTATCGCTATTAAAAA
GCCGTCACTTAATGACCAATTATCTTCTAATAGATTATTTCTTTTTAGAA
ACGGTGTTACATAGTTTTTAAGAAAAATTACTATTCCCTAGCGTGCAATC
TTTTATGTTCTTTTATAGCATTTAATTTATCTAAACTTTTTTCGTCACCT
TGTACAATAATGCATATAGTGTATCTTTTTGAATTTTATTTACTTTTTTT
AACATCTAGCACTGAAGATGGTTTTACCGAAAAACTTGTTGTTTTCTTAT
TACTTGAAATACAAACAGTTTCCTTTGATTATTATTTTGAATTGAAGATT
TCATTTTCCATAAGAAATACACCTGATATAGTCTGATCTAAATCTTTTGT
ACATCCGGTACCATAGGTCGTTTCGGAGGTGGTCGCGGTGGCATGGATCG
CCATCGAGGGCATCGGGACAACAATCGGCACGATCACAGACGACAACAAG
GCAATAATTTCATGCGGCAACAACGTTCACGATCGCCCGATCACAGGAGA
TACGAGCGTGAAAATCGTGACCGAAGACACAAAGACCGCGTTCGAGAATT
TTTAAAGGAAGACAGGTCAGACAAGCTGTTATTTGTTTTGAATAAATCTC
TCCAAACAGCTACTTTATTAAAAGATATTCCATGAATAAGTCCTGTTTGA
ATTTCTTTTTTTCTTTACGTACAGGTCGAAATACGGGGTACGCGAAGAGA
CACTTTTACACGGTTCATATTCTGATTACGTTCGCGAGTTTCGTCAAAAG
CAAATGGGAAGCTCTTCCTCTTCGCACAGGGTGAGTCTATGTATATCTTT
ACGCTCATTGATCTTCTACTTATTCTAACCCGTTTGATTTTGTTTGTAAA
AGAACTTTTTAAACCTAATCGTGTTTTAGCTCAACGAAAAGTGCCTCGAT
GTCACAGGTTTCTTTAGTTCGTCGCACATTTTCAAAGGAAAAGCGTTCTT
TCAAAGTGAACAATATATTCAGTGGGTTTGAATGATCTTTTTCATTTTTT
GAATGACTGTATTGTTTTTTTTTCTCGCAGAATTCTTCTTCGTATTATGG
TTCATCATCAAGTTACGGTGGATCACACAGTAGATCGGTGAGTATATTAT
TTTACTAAAACTTCTTTTGCAATAAGAGTTTTATAAAAGAATTTTTATGC
TGGAGTTGTTTAAGTTTTCAAAACCAATGTAGCAGCGCGCACATTTTGAT
GCTTTGCACTTGAAAGAAGAAAAGACATATTACTTCGTTGGAAAGATAAC
TTTCAGTGCGTGATTCAAGGCTTTGATATATTTTTAAGTTGGTAAATATC
TTGTTGAATGGTAAGGCTTGCAGTATATTTACCAGCAAATTGTGGCACAT
AAATTCTTTAGAAAACCTTTTTCTCCTTTTCAGTACGATGCGAACGCAGC
CTCAGCGGAGGAGTTTTTACGCCGCTCATCACATCGATGATGACGAGACC
TCCAAAAGATTGGAAGAAAAAAAAACGAAAATCCAAAACCTTTTAGCTGT
AAGATTGGAGTTGTTCTTCAAAAATGTTTGCGAAGAGTTTGTTTTCTAAA
AGGTTGTTCATTTCATGGCTTTCCTTGGAAGTGTCAATCCCTTCTTCAAC
ACCAAATACTTGTTTGTCAGAAAAAGTGAGAGAAGAATGAACACGTTGTT
ACCGCTCAATGTCTAAATGTTGGCTATTTTTTAATGAAAGAAATGTTGTT
ACTTTACTTTTTTTATGTTTTTAAACTTTTTTTGTACCGGATTTAATGCT
TTAGAAGCACTCGTTGAAAAATTATCTTTGTCATTGTGACGACTGTTGTA
AACGTGATTGAAATTGATTCAAAACCGACATGGACAGTATTAAAAAAACG
TCGGCAGAACGATAGTGTACAGATAGTTTTTATTATTGTACGGGGGACTC
TCGCTAATTTGAATTACCATTGTTAGTCTCTTTGTAATTCGAATTCTTCT
CAGTCCCACAAAGTGGAGGCCTTGATAAGTTAACAAAATTTATTTCCTTA
TTCAAATCTCAACGGTAATCGGAACAAATCAGATTTCAAGTTCGAATTAA
CGAGAGCCAACAGTATCTTAGGGTATATTATTTTTCTTTTCATTTTAGAG
TTTACATTTTATTAGTAGACTTCACACCCTTAAAAGATTTTTGGACAAAG
TGTAAGAATTATGAACAAGTAAAGAGAGCGACTTTTTAGAAAAAAATTCT
GACTATTCCATAGAGCATTTTGACAAACAATTCTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013787XLOC_013787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024542-exon-sc0000502-1575043694:98502..99093TCONS_00024542-exon-sc0000502-1575043694:98502..99093Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:98201..98314TCONS_00024542-exon-sc0000502-1575043694:98201..98314Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:97435..98057TCONS_00024542-exon-sc0000502-1575043694:97435..98057Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:97240..97282TCONS_00024542-exon-sc0000502-1575043694:97240..97282Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:96567..96779TCONS_00024542-exon-sc0000502-1575043694:96567..96779Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:96192..96257TCONS_00024542-exon-sc0000502-1575043694:96192..96257Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:95828..95931TCONS_00024542-exon-sc0000502-1575043694:95828..95931Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:95473..95526TCONS_00024542-exon-sc0000502-1575043694:95473..95526Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:95121..95293TCONS_00024542-exon-sc0000502-1575043694:95121..95293Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:94913..94997TCONS_00024542-exon-sc0000502-1575043694:94913..94997Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:94523..94650TCONS_00024542-exon-sc0000502-1575043694:94523..94650Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:92462..92631TCONS_00024542-exon-sc0000502-1575043694:92462..92631Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:91629..91827TCONS_00024542-exon-sc0000502-1575043694:91629..91827Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:91414..91519TCONS_00024542-exon-sc0000502-1575043694:91414..91519Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:91107..91163TCONS_00024542-exon-sc0000502-1575043694:91107..91163Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1575043694:89956..90810TCONS_00024542-exon-sc0000502-1575043694:89956..90810Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:98502..99093TCONS_00024542-exon-sc0000502-1510915933:98502..99093Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:98201..98314TCONS_00024542-exon-sc0000502-1510915933:98201..98314Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:97435..98057TCONS_00024542-exon-sc0000502-1510915933:97435..98057Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:97240..97282TCONS_00024542-exon-sc0000502-1510915933:97240..97282Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:96567..96779TCONS_00024542-exon-sc0000502-1510915933:96567..96779Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:96192..96257TCONS_00024542-exon-sc0000502-1510915933:96192..96257Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:95828..95931TCONS_00024542-exon-sc0000502-1510915933:95828..95931Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:95473..95526TCONS_00024542-exon-sc0000502-1510915933:95473..95526Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:95121..95293TCONS_00024542-exon-sc0000502-1510915933:95121..95293Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:94913..94997TCONS_00024542-exon-sc0000502-1510915933:94913..94997Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:94523..94650TCONS_00024542-exon-sc0000502-1510915933:94523..94650Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:92462..92631TCONS_00024542-exon-sc0000502-1510915933:92462..92631Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:91629..91827TCONS_00024542-exon-sc0000502-1510915933:91629..91827Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:91414..91519TCONS_00024542-exon-sc0000502-1510915933:91414..91519Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:91107..91163TCONS_00024542-exon-sc0000502-1510915933:91107..91163Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1510915933:89956..90810TCONS_00024542-exon-sc0000502-1510915933:89956..90810Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:98502..99093TCONS_00024542-exon-sc0000502-1491911889:98502..99093Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:98201..98314TCONS_00024542-exon-sc0000502-1491911889:98201..98314Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:97435..98057TCONS_00024542-exon-sc0000502-1491911889:97435..98057Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:97240..97282TCONS_00024542-exon-sc0000502-1491911889:97240..97282Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:96567..96779TCONS_00024542-exon-sc0000502-1491911889:96567..96779Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:96192..96257TCONS_00024542-exon-sc0000502-1491911889:96192..96257Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:95828..95931TCONS_00024542-exon-sc0000502-1491911889:95828..95931Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:95473..95526TCONS_00024542-exon-sc0000502-1491911889:95473..95526Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:95121..95293TCONS_00024542-exon-sc0000502-1491911889:95121..95293Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:94913..94997TCONS_00024542-exon-sc0000502-1491911889:94913..94997Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:94523..94650TCONS_00024542-exon-sc0000502-1491911889:94523..94650Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:92462..92631TCONS_00024542-exon-sc0000502-1491911889:92462..92631Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:91629..91827TCONS_00024542-exon-sc0000502-1491911889:91629..91827Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:91414..91519TCONS_00024542-exon-sc0000502-1491911889:91414..91519Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:91107..91163TCONS_00024542-exon-sc0000502-1491911889:91107..91163Clytia hemisphaericaexon
TCONS_00024542-exon-sc0000502-1491911889:89956..90810TCONS_00024542-exon-sc0000502-1491911889:89956..90810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:89956..99093 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1965	9.48684	19.4812	17.4502	26.7946	25.1488	21.1721	14.7544	12.1278	15.4778	10.0875	7.45372	6.62704	8.38831	1.94899	7.8394	11.2321	4.39904	9.54958e-06	0.143381	5.92911	4.48382	7.46594	6.94625	8.17428	9.17018	4.84377	5.32326	5.74688	4.38234
Blast
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BLAST of TCONS_00024542 vs. Swiss-Prot (Human)
Match: YTDC1 (YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 1.766e-55
Identity = 94/165 (56.97%), Postives = 127/165 (76.97%), Query Frame = 1 
Query: 1684 MLKGARYFIIKSNNYENVSLSKAKGVWATPPANERKLNDAFKHSTNVVLVFSVKESGRFQGFARLASESRHDGIPVPWVLPPGFDRRILGGTFKVDWLNRKEVTFSKCANLRNPWNENKEVKICRDGQELEPSVGEVLCRMFEDDLTINLERI---QRHAKRYKS 2169
            +L+ AR+F+IKSNN+ENVSL+KAKGVW+T P NE+KLN AF+ + +V+L+FSV+ESG+FQGFARL+SES H G P+ WVLP G   ++LGG FK+DW+ R+E+ F+K A+L NPWNE+K VKI RDGQE+E   G  LC +F  D +I+L ++    RH +R  S
Sbjct:  351 VLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHS 515
The following BLAST results are available for this feature:
BLAST of TCONS_00024542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YTDC11.766e-5556.97YTH domain-containing protein 1 OS=Homo sapiens GN... [more]
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