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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024590 ID=TCONS_00024590|Name=TCONS_00024590|organism=Clytia hemisphaerica|type=transcript|length=2494bpRun BLAST on NCBI protein sequence of TCONS_00024590-protein >TCONS_00024590-protein ID=TCONS_00024590-protein|Name=TCONS_00024590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp MDVVKTYLANFDALSDGCKQLYDIVIDKISQRYVYLPVTGLVLFYLVFVRRun BLAST on NCBI transcript from alignment at sc0000504:107869..138083+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024590 ID=TCONS_00024590|Name=TCONS_00024590|organism=Clytia hemisphaerica|type=transcript|length=30215bp|location=Sequence derived from alignment at sc0000504:107869..138083+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000504:107869..138083+ >TCONS_00024590 ID=TCONS_00024590|Name=TCONS_00024590|organism=Clytia hemisphaerica|type=CDS|length=36480bp|location=Sequence derived from alignment at sc0000504:107869..138083+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024590 vs. Swiss-Prot (Human)
Match: GATA (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Homo sapiens GN=QRSL1 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 3.602e-30 Identity = 139/503 (27.63%), Postives = 226/503 (44.93%), Query Frame = 1
Query: 589 REGKMTPTEVAINVMKAIKESQHLKSIIEMDGNDVLKMANESTERWQKGTQLSIFDGIPIAIKDEYIVGGYHLRNGFPMSSLDHIYDQSSEGGLVKKLRAGGAVFIGITNMHQCGIGA------FG--INP---SKHHGANR--NPYNPK-----YXXXXXXXXXXXXXXXXYCPVALGTDGGGSIRIPASACGVVGLKATYGRYTSSGMFSNGQTIGHTGPLCCSVRDTALAYGYLAGKDEDDEKTLMQP---PVHVGDFDNTDLSGFKIGFDPQ-TVEHCHPEIKVALLKAIETLKEKHNATVVDIHIPEKAESMRALAKILGSEMSN------------------SNEIIYCNHADELNIDVM------GSLKLGRSITADEYLTCSRQRTRCINGFKYIFTK-VDCIILPG-------FEEFLPEITKSREKYGYSHLGLTMKVASIGMLCNLSGIPAISVPMGYSQTHRFPLPMQIMAPWWREDTLLRVAHSVESNVK 1935
++G++TPTE+ + IK+++ L + I + LK A ES +R++ G L DGIPIA+KD + G S++ Y +V+KL GA+ +G TN+ + +G+ FG NP SK + R NP++ GGSSGGSA+A++A C ALG+D GGS R PA+ CG+VG K +YG + G+ ++ G L V D A+ G LAG D D T+ +P P + D+S IG + V E++ KA + L E A V+++ +P + S+ + SE+++ S E +Y E DV+ G+ L + + ++ + R N F F VD ++ P + EF+ E ++R + + N++G+PA+S+P+ S P+ +Q + + + LL VA E V+
Sbjct: 14 KQGQITPTELCQKCLSLIKKTKFLNAYITVSEEVALKQAEESEKRYKNGQSLGDLDGIPIAVKDNFSTSGIETTCA---SNMLKGYIPPYNATVVQKLLDQGALLMGKTNLDEFAMGSGSTDGVFGPVKNPWSYSKQYREKRKQNPHSENEDSDWLITGGSSGGSAAAVSAFTCYAALGSDTGGSTRNPAAHCGLVGFKPSYGLVSRHGLIPLVNSMDVPGILTRCVDDAAIVLGALAGPDPRDSTTVHEPINKPFMLPSL--ADVSKLCIGIPKEYLVPELSSEVQSLWSKAAD-LFESEGAKVIEVSLPHTSYSIVCYHVLCTSEVASNMARFDGLQYGHRCDIDVSTEAMYAATRREGFNDVVRGRILSGNFFLLKENYENYFVKAQKVRRLIANDFVNAFNSGVDVLLTPTTLSEAVPYLEFIKEDNRTR----------SAQDDIFTQAVNMAGLPAVSIPVALS-NQGLPIGLQFIGRAFCDQQLLTVAKWFEKQVQ 499 The following BLAST results are available for this feature:
BLAST of TCONS_00024590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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