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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024596 ID=TCONS_00024596|Name=TCONS_00024596|organism=Clytia hemisphaerica|type=transcript|length=5054bpRun BLAST on NCBI protein sequence of TCONS_00024596-protein >TCONS_00024596-protein ID=TCONS_00024596-protein|Name=TCONS_00024596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=942bp MSAGHNVIYETLNSFETLHSNATHLASKYSNVLNVLKEAQEANNQYISCSRun BLAST on NCBI transcript from alignment at sc0000504:142463..162456+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024596 ID=TCONS_00024596|Name=TCONS_00024596|organism=Clytia hemisphaerica|type=transcript|length=19994bp|location=Sequence derived from alignment at sc0000504:142463..162456+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000504:142463..162456+ >TCONS_00024596 ID=TCONS_00024596|Name=TCONS_00024596|organism=Clytia hemisphaerica|type=CDS|length=33948bp|location=Sequence derived from alignment at sc0000504:142463..162456+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024596 vs. Swiss-Prot (Human)
Match: DOHH (Deoxyhypusine hydroxylase OS=Homo sapiens GN=DOHH PE=1 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 1.232e-93 Identity = 153/296 (51.69%), Postives = 205/296 (69.26%), Query Frame = 1
Query: 3655 VSDEQIEKVSNVLLDVDRPLKERFRALFTLKNIGSDKCIDEIAKGFKDSSALLKHELAYCLGQMQNQKALPLLVSVLEDDNQEPIVRHEAGEAIGAIGSQDAIALIRKYARHSLPEIAETCQLALDRIDWIHNHGSDEGYQGDNPYQSVDPAPPMKGDDIDQXXXXXXXXXXXXFKRYRAMFALRNMSTPESIKGLCKGFSATSALFRHEIAFVLGQIADPVSTKSLITVLQKTEEHGMVRHECAEALGAIATPECLEVLEKYRKDNERVVRESCDIALDMCEYENSDQFQYADAL 4542
V++++++ + L+D +PL+ RFRALFTL+ +G I I++ F D SALLKHELAYCLGQMQ+ +A+P+LV VL+D QEP+VRHEAGEA+GAIG + + ++++Y+ + E+AETCQLA+ R++W+ HG G PY SVDPAPP + D+ +L E LL+E LF+RYRAMFALRN E+ L +G SALFRHE+ +VLGQ+ + L L + E+ MVRHECAEALGAIA P CL L+ + D ERVVRESC++ALDM E+E FQYAD L
Sbjct: 2 VTEQEVDAIGQTLVDPKQPLQARFRALFTLRGLGGPGAIAWISQAFDDDSALLKHELAYCLGQMQDARAIPMLVDVLQDTRQEPMVRHEAGEALGAIGDPEVLEILKQYSSDPVIEVAETCQLAVRRLEWLQQHG---GEPAAGPYLSVDPAPPAEERDVGRLREALLDESRPLFERYRAMFALRNAGGEEAALALAEGLHCGSALFRHEVGYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALGAIARPACLAALQAHADDPERVVRESCEVALDMYEHETGRAFQYADGL 294 HSP 2 Score: 102.449 bits (254), Expect = 7.543e-23 Identity = 53/157 (33.76%), Postives = 89/157 (56.69%), Query Frame = 1
Query: 3643 PALKVSDEQIEKVSNVLLDVDRPLKERFRALFTLKNIGSDKCIDEIAKGFKDSSALLKHELAYCLGQMQNQKALPLLVSVLEDDNQEPIVRHEAGEAIGAIGSQDAIALIRKYARHSLPEIAETCQLALDRIDWIHNHGSDEGYQGDNPYQSVDPAP 4113
PA + + ++ LLD RPL ER+RA+F L+N G ++ +A+G SAL +HE+ Y LGQ+Q++ A+P L + L + P+VRHE EA+GAI +A ++ +A + E+C++ALD ++ H + +Q + + + AP
Sbjct: 149 PAPPAEERDVGRLREALLDESRPLFERYRAMFALRNAGGEEAALALAEGLHCGSALFRHEVGYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALGAIARPACLAALQAHADDPERVVRESCEVALD----MYEHETGRAFQYADGLEQLRGAP 301 The following BLAST results are available for this feature:
BLAST of TCONS_00024596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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