TCONS_00024612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024612
Unique NameTCONS_00024612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024612 ID=TCONS_00024612|Name=TCONS_00024612|organism=Clytia hemisphaerica|type=transcript|length=503bp
AACGtttataaaatattgatgaaaCAACGTTCAACAAACGTCTTTTTCTG
TATTGTTATAGCCGATTGTATAAAAAAAGCATCAAATCAGTCCAACGTAA
AAAGTAGTCCAAAGTAGCtaagtaaataaggaactcgataagaaggaact
ttgaggctgaagcCCTCTGGAAAAAATACGGAATACTTGGCTCGGAGCCA
AAGTTTAAGGTTTCCCCACCTAAAAAACGTGTTTTGGCACGCCAGTATGT
TTAGTAAACCACATTTGCAGAAGAGCCTTGTTTTGTTACAATTTGCTGTT
AATTACTTTGCCAATTAGTATTTTCGTAAGAAAACCACACATGATTGATA
AATTATCCAATAATTGTCATGAGTCATCTTTCTTCCAATGATATTCAGAG
AATAATTTGGAGAACACTaacttttcagatttttgagtttaaaaagcATA
ATATTGGTAAGGAAATTTGATAATCAAGCGAATCCATTTCatttgaaatc
atg
Run BLAST on NCBI

transcript from alignment at sc0000504:93572..94074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024612 ID=TCONS_00024612|Name=TCONS_00024612|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at sc0000504:93572..94074 (Clytia hemisphaerica)
catgatttcaaatGAAATGGATTCGCTTGATTATCAAATTTCCTTACCAA
TATTATgctttttaaactcaaaaatctgaaaagttAGTGTTCTCCAAATT
ATTCTCTGAATATCATTGGAAGAAAGATGACTCATGACAATTATTGGATA
ATTTATCAATCATGTGTGGTTTTCTTACGAAAATACTAATTGGCAAAGTA
ATTAACAGCAAATTGTAACAAAACAAGGCTCTTCTGCAAATGTGGTTTAC
TAAACATACTGGCGTGCCAAAACACGTTTTTTAGGTGGGGAAACCTTAAA
CTTTGGCTCCGAGCCAAGTATTCCGTATTTTTTCCAGAGGgcttcagcct
caaagttccttcttatcgagttccttatttacttaGCTACTTTGGACTAC
TTTTTACGTTGGACTGATTTGATGCTTTTTTTATACAATCGGCTATAACA
ATACAGAAAAAGACGTTTGTTGAACGTTGtttcatcaatattttataaaC
GTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013823XLOC_013823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024612-exon-sc0000504-1491911889:93572..94074TCONS_00024612-exon-sc0000504-1491911889:93572..94074Clytia hemisphaericaexon
TCONS_00024612-exon-sc0000504-1510915933:93572..94074TCONS_00024612-exon-sc0000504-1510915933:93572..94074Clytia hemisphaericaexon
TCONS_00024612-exon-sc0000504-1575043694:93572..94074TCONS_00024612-exon-sc0000504-1575043694:93572..94074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000504supercontigsc0000504:93572..94074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08605	0.117675	1.22969	0.534691	0	0	0	0	0.101688	0.251915	0	0.160735	0	0	0.274088	0.0735345	0.181177	0	0.384833	0.134233	0	0	0.276722	0	0	0	0.165466	0	0.133937	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top