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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024615 ID=TCONS_00024615|Name=TCONS_00024615|organism=Clytia hemisphaerica|type=transcript|length=1888bp
ATAAAACAAGATAGATAACTTCAAATTGACAAAATcgctttaaaatttcc
tatatttttgacacgcaattccttccgaaagttctgttgaatttcaaaag
cctagggcagttttactcaaaatttatcgtagaagaagattccataaaaa
tggattgcccgttaaaccatgcctccgttaaaccatgccttcgcctGAAT
TAGAGAATTCTAAACCctttgaaatccctaagcaatttcaaccggggcgg
gagcaggcgtaaattataaccatgcaattgcgcgcttacgccctcggaac
ataagcgtgcaattgagaggatttcccagactgttcTAGAAAACTTAATC
ATtcattctcaatatattttttatttgaaagtaattgctTCATGGAATTA
AAAGATATAgtgtcaaatcttgtagggtcatttttcacaAAAGATTTGCC
TAAAGAATTCTACGCAAGCGAACGTGCCATAACCTCAAAAAAACAGCCAC
TCTACTGTGTCGTTGTCTGGATAAAAAATAGGTCAATTTCTTGTCAAATG
AtgtgactttttgacttttttacttttctaaTCTAATCCTTTCAATACTT
CAGAAAAACTAATTCCATTGCCAACATGGCAACAGGTTACACCCAAGCCA
CTAACATCATTGATATTTCTTTGttcatcatcaaaaaatatcaTCTTTTC
ATAGTCAACTCCACTGTTTCTCTTGATGTTGCTAAAGTGATTCAGCTTTT
GTCCAGGAAAAATctctttgaaatcaaaaaatctgTCGATATCAAATAAA
TCTAAAAGTTCCTCAGCAATGACTGGAGTTTCTGTTCTTGATGCAGCTGC
AATTAAATATCCTTCTTGTTTCAATGTTTCAAGGATTGCTTTTGTATCAG
AATACAATTTTACATGCTTATTTCTTTTATCCACAATATTTCCAGATCCT
TCCAGCTTCTTGAAAGGTGGAGTAACATGAGTGTCACACCAAAATGGCCA
TAATGTGTAATCAAGATCAAACACAAACAATTTCGGCATTAAGTCAGATT
TATCTTGCTGAAGAGCCAATTTTAGAGAATATATACCTGTATCTTTGGTT
GTTTCTGTTTTTTCATTTGACGAATGCCTCTTCTTCATCCTGATGTGAAT
GTGAAAAAACAGTGACGATATAAACTGAGCAGAAGTGGAAACGATACCTC
AGTATTTCGACACGTGCTTTCCTCATGGAAGATATATGCAAAATGGCGAA
TGGAATAGTGTAAATGACCACGAGGTAGTCTAATACACAGACCGAACTAA
ACCGAATTAATTTTATAAACTTAACAGTTTTGAAAACTAAAGTTTAATTA
ATctaaaaaatctaattaaattttcataatatcttatatttcaaattaat
ttttaagcAGACAAAGGTTTTAGTCAATTCTATTTTAGGTCCTCGGATCA
TTAGCTTTTTATTCTCTATTTCGCACTTTGTCGCGGTGACTATAATTTTA
TTATCGCCTTTCACAGGCAGTTTCGAAAAAGTCAACGCGGGGAAGAACCT
AGTTCCTCGAAAATATCATgttgtttacttttttactaTAACTTGATCGA
TTGATGCTGGATACTGGATGATATGTGGTTCCATGATTGTGAAACCGCCA
TTCAGGATAAtcattgattcaattgtatgtAAGTAGTTGTTGGtatcatg
gatttattatagagactcttctggataaacatcgaatgaaacggtggaga
gcgaagtattgtctttctattgttttagaaaacaatacaatagacctttt
ttcaaagaggccaccctgttgaataattatgtagtccagcagaaaaacaa
tgataaaaccatgcataattattacaatatgcatgata Run BLAST on NCBI transcript from alignment at sc0000506:7059..8946+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024615 ID=TCONS_00024615|Name=TCONS_00024615|organism=Clytia hemisphaerica|type=transcript|length=1888bp|location=Sequence derived from alignment at sc0000506:7059..8946+ (Clytia hemisphaerica)
ATAAAACAAGATAGATAACTTCAAATTGACAAAATcgctttaaaatttcc
tatatttttgacacgcaattccttccgaaagttctgttgaatttcaaaag
cctagggcagttttactcaaaatttatcgtagaagaagattccataaaaa
tggattgcccgttaaaccatgcctccgttaaaccatgccttcgcctGAAT
TAGAGAATTCTAAACCctttgaaatccctaagcaatttcaaccggggcgg
gagcaggcgtaaattataaccatgcaattgcgcgcttacgccctcggaac
ataagcgtgcaattgagaggatttcccagactgttcTAGAAAACTTAATC
ATtcattctcaatatattttttatttgaaagtaattgctTCATGGAATTA
AAAGATATAgtgtcaaatcttgtagggtcatttttcacaAAAGATTTGCC
TAAAGAATTCTACGCAAGCGAACGTGCCATAACCTCAAAAAAACAGCCAC
TCTACTGTGTCGTTGTCTGGATAAAAAATAGGTCAATTTCTTGTCAAATG
AtgtgactttttgacttttttacttttctaaTCTAATCCTTTCAATACTT
CAGAAAAACTAATTCCATTGCCAACATGGCAACAGGTTACACCCAAGCCA
CTAACATCATTGATATTTCTTTGttcatcatcaaaaaatatcaTCTTTTC
ATAGTCAACTCCACTGTTTCTCTTGATGTTGCTAAAGTGATTCAGCTTTT
GTCCAGGAAAAATctctttgaaatcaaaaaatctgTCGATATCAAATAAA
TCTAAAAGTTCCTCAGCAATGACTGGAGTTTCTGTTCTTGATGCAGCTGC
AATTAAATATCCTTCTTGTTTCAATGTTTCAAGGATTGCTTTTGTATCAG
AATACAATTTTACATGCTTATTTCTTTTATCCACAATATTTCCAGATCCT
TCCAGCTTCTTGAAAGGTGGAGTAACATGAGTGTCACACCAAAATGGCCA
TAATGTGTAATCAAGATCAAACACAAACAATTTCGGCATTAAGTCAGATT
TATCTTGCTGAAGAGCCAATTTTAGAGAATATATACCTGTATCTTTGGTT
GTTTCTGTTTTTTCATTTGACGAATGCCTCTTCTTCATCCTGATGTGAAT
GTGAAAAAACAGTGACGATATAAACTGAGCAGAAGTGGAAACGATACCTC
AGTATTTCGACACGTGCTTTCCTCATGGAAGATATATGCAAAATGGCGAA
TGGAATAGTGTAAATGACCACGAGGTAGTCTAATACACAGACCGAACTAA
ACCGAATTAATTTTATAAACTTAACAGTTTTGAAAACTAAAGTTTAATTA
ATctaaaaaatctaattaaattttcataatatcttatatttcaaattaat
ttttaagcAGACAAAGGTTTTAGTCAATTCTATTTTAGGTCCTCGGATCA
TTAGCTTTTTATTCTCTATTTCGCACTTTGTCGCGGTGACTATAATTTTA
TTATCGCCTTTCACAGGCAGTTTCGAAAAAGTCAACGCGGGGAAGAACCT
AGTTCCTCGAAAATATCATgttgtttacttttttactaTAACTTGATCGA
TTGATGCTGGATACTGGATGATATGTGGTTCCATGATTGTGAAACCGCCA
TTCAGGATAAtcattgattcaattgtatgtAAGTAGTTGTTGGtatcatg
gatttattatagagactcttctggataaacatcgaatgaaacggtggaga
gcgaagtattgtctttctattgttttagaaaacaatacaatagacctttt
ttcaaagaggccaccctgttgaataattatgtagtccagcagaaaaacaa
tgataaaaccatgcataattattacaatatgcatgata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024615-exon-sc0000506-1491911889:7059..8946 | TCONS_00024615-exon-sc0000506-1491911889:7059..8946 | Clytia hemisphaerica | exon |
| TCONS_00024615-exon-sc0000506-1510915933:7059..8946 | TCONS_00024615-exon-sc0000506-1510915933:7059..8946 | Clytia hemisphaerica | exon |
| TCONS_00024615-exon-sc0000506-1575043694:7059..8946 | TCONS_00024615-exon-sc0000506-1575043694:7059..8946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:7059..8946 + |
Blast
BLAST of TCONS_00024615 vs. Swiss-Prot (Human)
Match: MGDP1 (Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 2.427e-40 Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = -1
Query: 605 MPKLFVFDLDYTLWPFWCDTHVTPPFKKLEGSGNIVDKRNKHVKLYSDTKAILETLKQEGYLIAAASRTETPVIAEEXXXXXXXXXXXXFKEIFPGQKLNHFSNIKRNSGVDYEKMIFFDDEQRNINDVSGLGVTCCHVGNGISF 1039
+PKL VFDLDYTLWPFW DTHV PPF K G + D+R + V+LY + +L+ L+ G AAASRT A +LL+LFD+ R+F +EI+PG K+ HF +++ +G+ + +MIFFDDE+RNI DVS LGVTC H+ NG++
Sbjct: 4 LPKLAVFDLDYTLWPFWVDTHVDPPFHK-SSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNL 147
The following BLAST results are available for this feature:
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