TCONS_00024623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024623
Unique NameTCONS_00024623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024623 ID=TCONS_00024623|Name=TCONS_00024623|organism=Clytia hemisphaerica|type=transcript|length=1201bp
aatggtagacaaagtagcGGGAACCATAAATTGTTGCAAtaaaagcaaaa
ttaaatAATGGAATTCTCAATTGGTATTCAAGGAGCAGATTTTGTTTTGG
TTGCTTCTGATTGCAATGGAGCAAGGAGCATTGTTCGCATGAAAGATGaT
CTGGACAAACATGTCAGCTTGGGGAAGAATTTTCTGATGACAATCAATGG
AGAATCTGGTGATGCAACAAATTTTGCAGAAtacattcaaaaaaatattg
catTATACAAAATGAATAATGGTTATGAACTAACTCCTCACAGTGGCGCT
AACTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAGCAGAaCACCGTA
CCAAGTCAATTTATTATTATCGGGCTTTGACGAAAAGGAAGGACCTTCAC
TTTATCACATGGATTATTTAGCAGCCATGGTAAAGGTTCCTTTCGCAGCA
CACGGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGATCGCCATTGGAA
ACCAGGAATGACGAAAGAAGAAACAGCAGCTTTATTGAAGAAAGTTCTTT
TACAAGTTCAAAAACGATTCATTGTCAACCTACCAAAATTTTCCATACAA
ATTGTTAACAAAGATGGTATTACGAACCTGGGACAATTCACACCTAATGA
TATCACTGTGTAATTTATATCATCAACCAACCCtaccaatttttatttaa
catCATTTTGATAGGATGTTTATAAAGCAATTTGGGAGTGGTTAACAACG
ACCCTTTATAAAATCTAGAGTTACATTTAACCTGTTAAATAGAAAGACCT
GAAAACCTGTGTAATGTGATTTTACCCTatcacattttttaaatttgcag
TTTTTCTCAGTGCTTCTGTAACCTTGGTTACTAAAATTACTTCTGTCAAT
CTTACCGAACGCATTTCCAACTCAACGCGTTTTATTTGTTTAAACGTCTA
AACCTAGAATGTTGAGCAATAAAACCTGCTTTGTTTGAGCCcatttattt
tgttattcttaTGGAATGTTCCCTTTTCTAAGATCAAAGTTCGATGacat
tcaatttcaaaattgcgaaattttttaacattgttgttattttcaaattt
catgatAGTCTGATTTTAAGTATGACTTTTTCTGTAGAAAAAGATGAATT
TTGAACTGTACTGTAAATATCAAACAATTGTGTCTTTTATTCAGTTTCAT
G
Run BLAST on NCBI

protein sequence of TCONS_00024623-protein

>TCONS_00024623-protein ID=TCONS_00024623-protein|Name=TCONS_00024623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MEFSIGIQGADFVLVASDCNGARSIVRMKDDLDKHVSLGKNFLMTINGES
GDATNFAEYIQKNIALYKMNNGYELTPHSGANFVRKRLADFLRSRTPYQV
NLLLSGFDEKEGPSLYHMDYLAAMVKVPFAAHGYGGFFSLSTLDRHWKPG
MTKEETAALLKKVLLQVQKRFIVNLPKFSIQIVNKDGITNLGQFTPNDIT
V
Run BLAST on NCBI

transcript from alignment at sc0000506:63928..75118+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024623 ID=TCONS_00024623|Name=TCONS_00024623|organism=Clytia hemisphaerica|type=transcript|length=11191bp|location=Sequence derived from alignment at sc0000506:63928..75118+ (Clytia hemisphaerica)
aatggtagacaaagtagcGGGAACCATAAATTGTTGCAAGCaagtacatt
tttttttcagattttttagacCTTTCGATCTTTTCCCTTAGTTAGTTAgt
ttatttatttacattttgtttGAACAGTCTGCCGTCACAAATCTTGATAT
TCAAAGAAACTTGATATGAATATATGTAGATGTTGAGTTTTTTAAATATC
AATGACTGTGAATCACTGATGAACTACTGGTTTTTAATTTCATGCCTTCT
CTCacaggcacgacgcaacgggtacggcaggtacggcattttcacaaaaa
tacccgaagttttcctcttcgtcggtcaaatcgctataaaatcgcttaaa
tttcctcaatcgccgtaccagatattaaaagcttccgtcgtgcctgtctc
tcagttagggaaaccatccaggatcctgccattctataaaccagcaaaaa
ctaaatgacacttgtaaacttaagtttcttaccatttcccaTCGAAAACA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgacgcgaaaaaaaa
tttcagccaattaaaagcacagtgtgcttatacttactttgtttgctaca
tcgtctaggctaaaaaaagtgagaaaagacacgaacgtcatattttaatg
agtgttgttatgatttttttgattgcggccgcatacaggaactcgccaaa
tgttcctaactgtctCTTCAGACACAGTCTGAGAAGTCCTCTTAATTGCG
TAAGCCTGCAATTGCACAGTTAAAGTTTACGCCCgtgtgcaattgcacgc
ttatgatCCCGCATCACGCAGTACCCCatgcagttacatcaatatgcctt
cttacctgtctttaaaaatataaataaaagtaatcacggaaaaggacgcg
aaaaaaaaagacataagtgtgagaacagAGTAATCAAACTCGTTAGAgaa
agtaccattagaagtcataaaaatcaacctgaataaatgcaatcgaaatt
ccagagaacttcataattccccaaaaaacattacattactatgtcaaact
cccatcacataaattgtacaattacgtcagagtagactacgctcgccacc
gaagaggtttatttggaaagggtaattatattttattgttcgcttctttt
ttaaagattcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATCCGTTCAGCT
GACCAAAATGacataaaaatgacaaaatggcctgtcaagactttttaata
tcAATTTGTTTGGTAAAGCAATCAATCTCAAATTAAAAGTATCTTGACAA
GGAATAAAGCTTTTCATATAATATAGCCACAAACAGAATTACCAtggctt
ttaccaaaaaaactatttgggccattccagaatttgtctgtaacaggggg
gtgGATGACACAGGATTTCCAAGGGCAAAAggtttcaccaaaattcgaaa
tttccaaggcgagagaagaaaatgtatgaattttcaaagcaattgaatta
taaaaggcaaaaaagagtggagtttccgatgcattttgcaaaagtacatg
gattttcatcggaatttccgaccaccactggaaaagagaaattatttctg
aggctagaaaaaaaaagatgcATGTCGTCCAacgggggtaacaaaaattt
tctgggatGGCCCTTTCAAAGATccaatttcagccattttcagccaaatc
caactttGGTTCTTGCTGGGGCTTCGTGGAAACTTATCCTGTCCATATGT
AAACATTCCTGTATGTTTCTGATGTACTTGACTACCGGTTGTCAAACCGG
GATAAGACGGGGGTACtgcaataaaaagttatgcaagAAAAACCACAATT
TTCACCTCAAAAGGTGACTTttgccaataacttttgatagaatccagtta
ggaacatttggcgagttcctgtacgcgaccatgatctaaaaaatcataac
aacactcattaaaaaatgacgttcgtgtcttttcaaactttttttagcct
agacgatgtagcaaacatagtaaatataagcacactgtgcttttaattgg
ctgaagtttttttttgcgtcggaaaatttttttcaaacttttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTgcgtcagaa
aatttttttcaaacttttagcaatgattgaccaaactgttacaatgaaaa
ttatccagcgcattttttatcttcttattttcttaatattaaatgaagca
ctcaaagtttactgaatttaagcactcaagatattcttataattattgat
attcactaaaacagttcgttgtgcgctgcggtggagtgtataTGACATAA
CTCGCGCGGTAACTAACTCGCTTTTTGTTGGAAGATCaaattgggcgttt
tggcgttacaaccctcgaagctagcgggcgcccctgtctttctgcaactc
tttccaccattttagatggccataacaatagatccaaaagggcgccataa
tcttggaagataatttgttttggtctcNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTAttgatggaaaatagtaa
gaaacttaagtttacaagtggcatttagtttttgctggcttatagaatgg
caggatcctggatggtttccctaactggaATCGTTCCCCTAATTTCCCCT
TTTCAGTAGATCTTCCTCTATCTTATgtgcttcagaaaaaccaaacaCAT
TGCCCTAAAAGCTTAGCCTCGCAAAGCCCCAGCTAATAATATTTATACCC
CCAGCTAATAATATACCCCCCTGGTTGAATCTTTGTATTCTTATCCTATA
AATATAACAAAATGGCCATTCTGCAGAAATTGCTGTCACATGACTTTTTT
CTACCACGTGATACAAATCGCGCATTTTCATTGGATGTTGGAAATTTATT
TGTCATGTCGGTTGTCGGTTGTTGGTTGTCAAGTACATCAGAAACATATA
TACGGGAATGTTTACACATGGACAGGATAAGTTTCCACGAAACACCAGCA
AGAACAaaagttggatttggctgaaaatggctgaaattggacctttatat
tttttttggcaaaagctATGGTGATTCTGTTTGGCTATATGAAAAGCTTA
TCTATTCCTTGTCAAGATACTTTTCATTTGAGATTGATTGCTTTAccaaa
caaaaagatattaaaaagtcttgacaGGTCATGTTGtcatttttgtgtca
ttttggTCAGTTGAGCGGATCAAcgcatttccattgttttgcctTTTGGA
ACATGCGCGAGATAGTTGTTTTAGAGAATGCgacctattgaataacaaat
tattccacatacattactttccctcagccaataaaaatgtgataaattat
cttgtctctaggtaactgttgtggagtaattagttattcaataggctGTC
ACGTTCTCCAAACAACTATTGCAGATACTGGAACTTTTGTAATAtatcta
gaaaaaaaaaaataataatgaagTTTTATCAggaaaatgaacttttttga
gccAGAGGGCagtaatacaccgtttaacagtctcgccatctccaccgtag
aggcggtaggtaaaaatgctcactttagtactgtggaaggttagagaaat
gtaaacattgccaatttttttctttcctttaaagagaatgttttaaagtc
tgtctcaaaataatttgcagctggagaaaaaaatggctgtaacttttgat
agaattcgaatcaagttgtgattttgtgctcgttaaaaagatatttgtga
gtggaatattataaagtaaaaaatttgagaaaaaaaaaaggaaaataaaa
atgaaaaatgaagaagaaaaaaatcaactttttgtagaaatgtggtataa
ttaccattttcacaaaagagggattcttcaatcttagatcatcatcactg
tcaaaaaaattttcaaaaatattcattcaatcaaaagatatcaaacaaag
tttattgctggttgatcgacaaaaggctgttttttgtagttttttaacgt
ttttactactttatagagtcaacaagcaataaactttgtttgatatcttt
tgattgaatgaatatttttgaaaatttctggcactcaaagggttaacaag
cacaaaatcgcaacttgattcgaattctatcaaaagttacagccattttt
gtctccagctgcaaattattttgagacagactttagNGTTTGCCGACAGT
ATTTGATTTCCCTGAAATGAGTTACAGAGTTTTGATTCGCTGGAATGGAA
CACCAGTGTGATTTggacaaaattttccaaaaattggttTGCCTTTTAAA
AAGTTGGTGgaccaatttaattttttggacaTGATGGCTCTCACTATACA
TAGCCAAGGCTTTATTCTGCTGAGGGttactttgtaatttttaatactTC
AGGCTGATTATATTCATTTTagtaaaagcaaaattaaatAATGGAATTCT
CAATTGGTATTCAAGGAGCAGATTTTGTTTTGGTTGCTTCTGATTGCAAT
GGAGCAAGGAGCATTGTTCGCATGAAAGATGGTATGTTTTATTGTTTATA
TTCTCATACATATCTAAAAAGGTTCAATATATGAAAGGTTATAACTGccc
atagtgtgcaagggggttccaggtcccacctaaaaattcaggtcccacct
aacCCTAAATTTCCCACCTCCAatccagactcccagatcccagctaaaac
tACTATCCCCATGAAAAATTATACTAATACGAAGaaggtaaacaaaaatt
attgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CCAAAACACTTTAAATTCTTTTAGTACCATTTGggtattaaaatacaaaa
aaggtgATATCCAGactaaaatttcagaatttttttagtTGATTGGTACT
AAAATTAGTAATTTTATATATTTGATAGAATTTTACACTCTGAAGATGAC
CTCTTTCTGTGTAGGTCGAATACAcagtttttaaattaaaaaacatgATG
CTTCTGGTTATTCTTTTTTACCATTAAATTATTAGTCCAAGGAAATATCT
TTCAATAAtctctttatgattttttaagaatttttgcaatttttcgaaaa
ataaaaatattctcaTTATAAGAAAATTCCCAAGTTCAATTATGTTTGCA
TTCAATCAAATATCTTTAATGTTTCCTCAATTCAGAAGCAGCATTGTTTA
ATAGATTTTTGTGGAAAATAGATATCATCTTGCATAAAATCAGCATTCGC
GAGGAAAATGGTTCTGAGAAGACAAAATTTGTCTCGAAAATACCAAAATT
GGGTGGTCTTTGTGTCCTAGTGTCTTTAAAATATTTAGTGCAAGGACTGA
CAagggtactaaaataccacttgTCAAAATTAAGGTGGTGGTATACAAGA
AATTCTCCAAAATACTTTAGTATGATTCATATTATGACCGAGATTTTAGT
ACTGATCCCCCCCCCTGAATAAATTAcagtataataataaaaaagagaaa
agcttAGGacagtaaaaaaattatttataaaatataacagagataagaaa
aaattaactttcacattcaccaaaacaccaaaactcccacctaaagaaat
taactcccaccttaacttgtttctcccacctagaacctgaaaatttccaa
atcccacctagaaatttccgacccaaaacagcaaaaccccccccactatt
ctggggggggtgcacactatgctGCCCCAAgttaacaacaacaaaaattt
tgGGGTTCTTTTATCAACGTTTCTACATCTTACAGGTCTTTTCATACAAA
AAACACGAATCCGAtaataaaatttaaagaatttttacagtGTATATGAA
AATTGCATGGAGAAAGTGCTATGCTAttgagaaaaatgttttcaaggaaa
aaaatctaaaggacaaaaagttgaaaaatgaagatgaggTTTTTTCAcca
ttggaaatatctttccaacagtgTATAGCTTTTTGATATAGCATTAATAC
ATGTTCAAAAATGTAAAGTGTACacacagggctgcaaataagcgtcggtC
ATTGGTTAATGTCCTACTGAAAAAGccatttgaccgactgaaaatctttt
gtgtcggtcatgatgtccgaatgaaaaaaggaataaaccattaacttgag
atttgaaaataaatctcttacgTCTTttacttagcctattcttttaatac
tcgcttcctttgtagctttcagggtgtttctaagtttaATCTTATCGACT
TGTTTTCTTCGTAgccttctttgtttctaagatcacaacacttttatcaa
tttgctttctttgtaactttcaagggtgtttcaaagtttacttttatcga
ctcgctttcttcgtaactttcaagagtgtttctaagttaacttttatcga
cccgctttcttcgtaactttcaagagtgtttctaagatcacttctatcaa
ttcgctttcttcgtaactttcaagggtgtttctaagatcacttttattta
tcgtatcaatttctctgttacatcatggatttattatagagactctggat
aaacatcgaatgaaacggtggagagtgaagtattgtatttccattgtttc
aaaaaacaatcgatgtacaggctttgtccgcaaaggacaactgtatggcg
gctcgaaggactctgattttgaaaaatgattaatactcttatttcttaAA
TGTTCTCTAACTTTATctattcgtacttttgctggcaaaagtttgaaaat
aaatgctagtaTACCAAGcggatacatttatgaaatctggtgtgtgAAAA
ACATCACCAGacaagtaaaatcaaacaaaatgcttataatgacacgaaat
tttcaattgggaaaatttttcttatatttctctgagaagagctgagattg
acatgtattagacgtgagtctcaCAGCTCCAATGtggtttgaaaatcttt
tggtggcacgtggtgtcacggtggattttttgagtttgaagtttaaaaat
ttctggtgtcaatattcaatttcttatacatagcatgtttttgcatcttt
ctcgcaatttaaaacgtcataacgacctataattagcaattaactaGAAG
AGTTCGAATGTCAgaggagaacttaaagtctcatttgggaattggataag
tgtattttgatgataaaTGCAATCAAAATGCTATGAAGAATCActttaat
ggtggaaggagggtgaacaatactGTCATTACTACGGACAAGgattgtac
atgagaaattggcaaaaatcagccagttgtttttccagtgtctataataa
tttcTTGGTtacagtaacaaactgttccaaggtaaattttattttaccta
ctcgctttctccgtaactttcGAGActgcataattttagaaaaaatatac
actgaatgaccgacaggattttgagtttgaccgacaggatttcatttctg
tcggacatgatgtccgatagactaaaaatatttatttgcagccctgtacA
CATACCTTTTGAGAGAGACTTTAAATAGATTATATAAATAGATTTTCATA
GTATAAAAGTTATTCTTGCCTTACTAAAGTATGGTTATCACCAAACTAtc
aaactgaatttttttagaTCTGGACAAACATGTCAGCTTGGGGAAGAATT
TTCTGATGACAATCAATGGAGAATCTGGTGATGCAACAAATTTTGCAGAA
tacattcaaaaaaatattgcatTATACAAAATGAATAATGGTAAGCAGAG
AACCTACACTTTACTCATTCTAACGTATGGGAAACTATATTTTACATGTT
TTCTCAgtaaaagcaaaaataaatcatttgaTACGTTTGTATGGTCGTTC
TTCATACACTTTTTCATGCAATAAAGTAaaggatgtttttttttcaaact
tgcTAAAAAGAATAGTTTTTTGATCTTTGCTTAATCTTGTTGCTTCAACA
AATTCTGATGAAAGTTAATCATAATCCGAATTATTTTCTCATTTAGGTTA
TGAACTAACTCCTCACAGTGGCGCTAACTTTGTAAGAAAGCGTCTTGCAG
ACTTTCTCCGTAGCAGAGTAAGTGTATACCAGTTGTATACCTAGTTTATc
attctacatctgcaatttgagctttactatATACCAGATGAGTTGTACAA
ACTTTATGATCCTTAGAACTTCTtcgttttcataaaaaatgttgTACTCT
TTTTCTCAAGTAGTGAACTAAAAACTTTTACTGCTTCTAGTCCTAAgttc
aagttttttcttttctctgtCACATTAACATCAAATTTCTTTTACATCCA
ACTCCTCACATTCGTTGCCAAGAACTAtgatcattttcttcttcattttc
tttagaCACCGTACCAAGTCAATTTATTATTATCGGGCTTTGACGAAAAG
GAAGGACCTTCACTTTATCACATGGATTATTTAGCAGCCATGGTAAAGGT
ACGTCCACATATTGTAGTCCTGGCGCGTTTTTcgtttgtttttcaataaa
aaattttctattaaGGTGCTCATTTTACGGAGTAAATCTGTTAAAGTTGT
CGAAGTGAGATAGACCCAAGTTTAATATTACACAATAAACTTGCTTACCt
caaggaaactaattttcacagtaaaaactaaattttacaaaattttgttt
tttgcgaaaaaaattGGTCATGAAATAAAAGAAGTACTTTTACATTGCTT
TCTGGTTGATTTCTTTCTGCAGGTTCCTTTCGCAGCACACGGTTATGGTG
GTTTCTTCTCTTTGAGTACCCTCGATCGCCATTGGAAACCAGGTATCCTT
ATAAGTTTTTTGTGTTTCCTACAACACTATTGTATCTGTGGGACCTTGAA
AATCTTTTCACCTTTtcacagctgttttgtccagtttttgcgcttttgga
agttcaatatctcgagttaggtaccgAAATCatctatactcgcaatatat
cactaatcttaattttttgagggCTTTCCAAAagtatacaacaggtctcc
gttttctcaagctaaaattttcattaatttttcaccctatgatttttgcc
taaGACAAAAggatttgtccgaaaatcacaccaaagtgtccgaaaaaaaa
ttggcacccaagttatttggattcccttaccccttagctttccaaaaatg
tataacaagtgctttgactaaaaaaatcgagcgattttacaaatttcccc
ctactatgaGCTCTgctaaatgttcttattttttgtgcACTGAAACAATC
CCTGCTTCCTAGTCTCAAATCTTATTCATTGTTCTTTTTCAGGAATGACG
AAAGAAGAAACAGCAGCTTTATTGAAGAAAGTTCTTTTACAAGTAAGTTA
CTCATTCAACTATCTCATAATTTATTCCATTACTCGAATTTCATGTCGAT
ATCGACTGGGGATTTGACAGGTAAGATAGGTGGGGTGAAGAAACAGTGAG
ttgtttttttgccgactttttcATCAATATTTCTCTCTTCTTCAGGTTCA
AAAACGATTCATTGTCAACCTACCAAAATTTTCCATACAAATTGTTAACA
AAGATGGTATTACGAACCTGGGACAATTCACACCTAATGATATCACTGTG
TAATTTATATCATCAACCAACCCtaccaatttttatttaacatCATTTTG
ATAGGATGTTTATAAAGCAATTTGGGAGTGGTTAACAACGACCCTTTATA
AAATCTAGAGTTACATTTAACCTGTTAAATAGAAAGACCTGAAAACCTGT
GTAATGTGATTTTACCCTatcacattttttaaatttgcagTTTTTCTCAG
TGCTTCTGTAACCTTGGTTACTAAAATTACTTCTGTCAATCTTACCGAAC
GCATTTCCAACTCAACGCGTTTTATTTGTTTAAACGTCTAAACCTAGAAT
GTTGAGCAATAAAACCTGCTTTGTTTGAGCCcatttattttgttattctt
aTGGAATGTTCCCTTTTCTAAGATCAAAGTTCGATGacattcaatttcaa
aattgcgaaattttttaacattgttgttattttcaaatttcatgatAGTC
TGATTTTAAGTATGACTTTTTCTGTAGAAAAAGATGAATTTTGAACTGTA
CTGTAAATATCAAACAATTGTGTCTTTTATTCAGTTTCATG

Coding sequence (CDS) from alignment at sc0000506:63928..75118+

>TCONS_00024623 ID=TCONS_00024623|Name=TCONS_00024623|organism=Clytia hemisphaerica|type=CDS|length=4242bp|location=Sequence derived from alignment at sc0000506:63928..75118+ (Clytia hemisphaerica)
ATGGAATTCTCAATTGGTATTCAAGGAGCAGATTTTGTTTTGGTTGCTTC
TGATTGCAATGGAGCAAGGAGCATTGTTCGCATGAAAGATGaTCTGGACA
AACATGTCAGCTTGGGGAAGAATTTTCTGATGACAATCAATGGAGAATCT
GGTGATGCAACAAATTTTGCAGAAtacattcaaaaaaatattgcatTATA
CAAAATGAATAATGGTTATGAACTAACTCCTCACAGTGGCGCTAACTTTG
TAAGAAAGCGTCTTGCAGACTTTCTCCGTAGCAGAaCACCGTACCAAGTC
AATTTATTATTATCGGGCTTTGACGAAAAGGAAGGACCTTCACTTTATCA
CATGGATTATTTAGCAGCCATGGTAAAGGTTCCTTTCGCAGCACACGGTT
ATGGTGGTTTCTTCTCTTTGAGTACCCTCGATCGCCATTGGAAACCAGGA
ATGACGAAAGAAGAAACAGCAGCTTTATTGAAGAAAGTTCTTTTACAAGT
TCAAAAACGATTCATTGTCAACCTACCAAAATTTTCCATACAAATTGTTA
ACAAAGATGGTATTACGAACCTGGGACAATTCACACCTAATGATATCACT
GTGTAAATGGAATTCTCAATTGGTATTCAAGGAGCAGATTTTGTTTTGGT
TGCTTCTGATTGCAATGGAGCAAGGAGCATTGTTCGCATGAAAGATGaTC
TGGACAAACATGTCAGCTTGGGGAAGAATTTTCTGATGACAATCAATGGA
GAATCTGGTGATGCAACAAATTTTGCAGAAtacattcaaaaaaatattgc
atTATACAAAATGAATAATGGTTATGAACTAACTCCTCACAGTGGCGCTA
ACTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAGCAGAaCACCGTAC
CAAGTCAATTTATTATTATCGGGCTTTGACGAAAAGGAAGGACCTTCACT
TTATCACATGGATTATTTAGCAGCCATGGTAAAGGTTCCTTTCGCAGCAC
ACGGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGATCGCCATTGGAAA
CCAGGAATGACGAAAGAAGAAACAGCAGCTTTATTGAAGAAAGTTCTTTT
ACAAGTTCAAAAACGATTCATTGTCAACCTACCAAAATTTTCCATACAAA
TTGTTAACAAAGATGGTATTACGAACCTGGGACAATTCACACCTAATGAT
ATCACTGTGTAAATGGAATTCTCAATTGGTATTCAAGGAGCAGATTTTGT
TTTGGTTGCTTCTGATTGCAATGGAGCAAGGAGCATTGTTCGCATGAAAG
ATGaTCTGGACAAACATGTCAGCTTGGGGAAGAATTTTCTGATGACAATC
AATGGAGAATCTGGTGATGCAACAAATTTTGCAGAAtacattcaaaaaaa
tattgcatTATACAAAATGAATAATGGTTATGAACTAACTCCTCACAGTG
GCGCTAACTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAGCAGAaCA
CCGTACCAAGTCAATTTATTATTATCGGGCTTTGACGAAAAGGAAGGACC
TTCACTTTATCACATGGATTATTTAGCAGCCATGGTAAAGGTTCCTTTCG
CAGCACACGGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGATCGCCAT
TGGAAACCAGGAATGACGAAAGAAGAAACAGCAGCTTTATTGAAGAAAGT
TCTTTTACAAGTTCAAAAACGATTCATTGTCAACCTACCAAAATTTTCCA
TACAAATTGTTAACAAAGATGGTATTACGAACCTGGGACAATTCACACCT
AATGATATCACTGTGTAAATGGAATTCTCAATTGGTATTCAAGGAGCAGA
TTTTGTTTTGGTTGCTTCTGATTGCAATGGAGCAAGGAGCATTGTTCGCA
TGAAAGATGaTCTGGACAAACATGTCAGCTTGGGGAAGAATTTTCTGATG
ACAATCAATGGAGAATCTGGTGATGCAACAAATTTTGCAGAAtacattca
aaaaaatattgcatTATACAAAATGAATAATGGTTATGAACTAACTCCTC
ACAGTGGCGCTAACTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAGC
AGAaCACCGTACCAAGTCAATTTATTATTATCGGGCTTTGACGAAAAGGA
AGGACCTTCACTTTATCACATGGATTATTTAGCAGCCATGGTAAAGGTTC
CTTTCGCAGCACACGGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGAT
CGCCATTGGAAACCAGGAATGACGAAAGAAGAAACAGCAGCTTTATTGAA
GAAAGTTCTTTTACAAGTTCAAAAACGATTCATTGTCAACCTACCAAAAT
TTTCCATACAAATTGTTAACAAAGATGGTATTACGAACCTGGGACAATTC
ACACCTAATGATATCACTGTGTAAATGGAATTCTCAATTGGTATTCAAGG
AGCAGATTTTGTTTTGGTTGCTTCTGATTGCAATGGAGCAAGGAGCATTG
TTCGCATGAAAGATGaTCTGGACAAACATGTCAGCTTGGGGAAGAATTTT
CTGATGACAATCAATGGAGAATCTGGTGATGCAACAAATTTTGCAGAAta
cattcaaaaaaatattgcatTATACAAAATGAATAATGGTTATGAACTAA
CTCCTCACAGTGGCGCTAACTTTGTAAGAAAGCGTCTTGCAGACTTTCTC
CGTAGCAGAaCACCGTACCAAGTCAATTTATTATTATCGGGCTTTGACGA
AAAGGAAGGACCTTCACTTTATCACATGGATTATTTAGCAGCCATGGTAA
AGGTTCCTTTCGCAGCACACGGTTATGGTGGTTTCTTCTCTTTGAGTACC
CTCGATCGCCATTGGAAACCAGGAATGACGAAAGAAGAAACAGCAGCTTT
ATTGAAGAAAGTTCTTTTACAAGTTCAAAAACGATTCATTGTCAACCTAC
CAAAATTTTCCATACAAATTGTTAACAAAGATGGTATTACGAACCTGGGA
CAATTCACACCTAATGATATCACTGTGTAAATGGAATTCTCAATTGGTAT
TCAAGGAGCAGATTTTGTTTTGGTTGCTTCTGATTGCAATGGAGCAAGGA
GCATTGTTCGCATGAAAGATGaTCTGGACAAACATGTCAGCTTGGGGAAG
AATTTTCTGATGACAATCAATGGAGAATCTGGTGATGCAACAAATTTTGC
AGAAtacattcaaaaaaatattgcatTATACAAAATGAATAATGGTTATG
AACTAACTCCTCACAGTGGCGCTAACTTTGTAAGAAAGCGTCTTGCAGAC
TTTCTCCGTAGCAGAaCACCGTACCAAGTCAATTTATTATTATCGGGCTT
TGACGAAAAGGAAGGACCTTCACTTTATCACATGGATTATTTAGCAGCCA
TGGTAAAGGTTCCTTTCGCAGCACACGGTTATGGTGGTTTCTTCTCTTTG
AGTACCCTCGATCGCCATTGGAAACCAGGAATGACGAAAGAAGAAACAGC
AGCTTTATTGAAGAAAGTTCTTTTACAAGTTCAAAAACGATTCATTGTCA
ACCTACCAAAATTTTCCATACAAATTGTTAACAAAGATGGTATTACGAAC
CTGGGACAATTCACACCTAATGATATCACTGTGTAAATGGAATTCTCAAT
TGGTATTCAAGGAGCAGATTTTGTTTTGGTTGCTTCTGATTGCAATGGAG
CAAGGAGCATTGTTCGCATGAAAGATGaTCTGGACAAACATGTCAGCTTG
GGGAAGAATTTTCTGATGACAATCAATGGAGAATCTGGTGATGCAACAAA
TTTTGCAGAAtacattcaaaaaaatattgcatTATACAAAATGAATAATG
GTTATGAACTAACTCCTCACAGTGGCGCTAACTTTGTAAGAAAGCGTCTT
GCAGACTTTCTCCGTAGCAGAaCACCGTACCAAGTCAATTTATTATTATC
GGGCTTTGACGAAAAGGAAGGACCTTCACTTTATCACATGGATTATTTAG
CAGCCATGGTAAAGGTTCCTTTCGCAGCACACGGTTATGGTGGTTTCTTC
TCTTTGAGTACCCTCGATCGCCATTGGAAACCAGGAATGACGAAAGAAGA
AACAGCAGCTTTATTGAAGAAAGTTCTTTTACAAGTTCAAAAACGATTCA
TTGTCAACCTACCAAAATTTTCCATACAAATTGTTAACAAAGATGGTATT
ACGAACCTGGGACAATTCACACCTAATGATATCACTGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013829XLOC_013829Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024623-proteinTCONS_00024623-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024623-exon-sc0000506-1491911889:63928..63966TCONS_00024623-exon-sc0000506-1491911889:63928..63966Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:63928..63966TCONS_00024623-exon-sc0000506-1510915933:63928..63966Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:63928..63966TCONS_00024623-exon-sc0000506-1575043694:63928..63966Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1491911889:69150..69258TCONS_00024623-exon-sc0000506-1491911889:69150..69258Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:69150..69258TCONS_00024623-exon-sc0000506-1510915933:69150..69258Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:69150..69258TCONS_00024623-exon-sc0000506-1575043694:69150..69258Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1491911889:72595..72717TCONS_00024623-exon-sc0000506-1491911889:72595..72717Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:72595..72717TCONS_00024623-exon-sc0000506-1510915933:72595..72717Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:72595..72717TCONS_00024623-exon-sc0000506-1575043694:72595..72717Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1491911889:72974..73044TCONS_00024623-exon-sc0000506-1491911889:72974..73044Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:72974..73044TCONS_00024623-exon-sc0000506-1510915933:72974..73044Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:72974..73044TCONS_00024623-exon-sc0000506-1575043694:72974..73044Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1491911889:73333..73425TCONS_00024623-exon-sc0000506-1491911889:73333..73425Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:73333..73425TCONS_00024623-exon-sc0000506-1510915933:73333..73425Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:73333..73425TCONS_00024623-exon-sc0000506-1575043694:73333..73425Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1491911889:73700..73769TCONS_00024623-exon-sc0000506-1491911889:73700..73769Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:73700..73769TCONS_00024623-exon-sc0000506-1510915933:73700..73769Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:73700..73769TCONS_00024623-exon-sc0000506-1575043694:73700..73769Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1491911889:74270..74319TCONS_00024623-exon-sc0000506-1491911889:74270..74319Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:74270..74319TCONS_00024623-exon-sc0000506-1510915933:74270..74319Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:74270..74319TCONS_00024623-exon-sc0000506-1575043694:74270..74319Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1491911889:74473..75118TCONS_00024623-exon-sc0000506-1491911889:74473..75118Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1510915933:74473..75118TCONS_00024623-exon-sc0000506-1510915933:74473..75118Clytia hemisphaericaexon
TCONS_00024623-exon-sc0000506-1575043694:74473..75118TCONS_00024623-exon-sc0000506-1575043694:74473..75118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:63928..75118 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
193.232	203.742	244.865	258.816	161.328	125.159	153.206	162.413	165.997	131.925	124.97	130.216	93.5243	106.167	120.913	118.339	135.179	143.645	73.6404	76.3433	120.99	113.391	122.608	120.453	178.551	203.32	123.187	113.465	110.352	95.1624
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
IPR016050Proteasome_bsu_CS
IPR023333Proteasome_suB-type
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
cellular_component GO:0005839 proteasome core complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00024623 vs. Swiss-Prot (Human)
Match: PSB2 (Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.561e-68
Identity = 115/195 (58.97%), Postives = 149/195 (76.41%), Query Frame = 1 
Query:   58 MEFSIGIQGADFVLVASDCNGARSIVRMKDDLDKHVSLGKNFLMTINGESGDATNFAEYIQKNIALYKMNNGYELTPHSGANFVRKRLADFLRSRTPYQVNLLLSGFDEKEGPSLYHMDYLAAMVKVPFAAHGYGGFFSLSTLDRHWKPGMTKEETAAXXXXXXXXXXXRFIVNLPKFSIQIVNKDGITNLGQFT 642
            ME+ IGIQG D+VLVASD   A +IV+MKDD DK   + +  L+   GE+GD   FAEYIQKN+ LYKM NGYEL+P + ANF R+ LAD LRSRTPY VNLLL+G+DE EGP+LY+MDYLAA+ K PFAAHGYG F +LS LDR++ P +++E    LL+K L ++QKRFI+NLP FS++I++K+GI +L   +
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNIS 195
The following BLAST results are available for this feature:
BLAST of TCONS_00024623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSB21.561e-6858.97Proteasome subunit beta type-2 OS=Homo sapiens GN=... [more]
back to top