TCONS_00024630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024630
Unique NameTCONS_00024630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024630 ID=TCONS_00024630|Name=TCONS_00024630|organism=Clytia hemisphaerica|type=transcript|length=1005bp
CTGTTTAATCACACAAAATTACAGTCGAAACTGATGGGGATTTAAAGAGA
GTTCCAAAACAGAACAATCAAGAGATGGCCTATTTAAATGACACTTTCGA
AAGGGGTTGTTCATCATTTACCACTGAACACTAAACAAGTAAACACAACA
AAACAACAACTTCACCAACAAACAAACAACCATGCAACCAACATTTATTA
CCGTCTTATGCCTTGTATGTTTAGGTTTAACCAGGAAGACACAATCGTTT
GTTATCACACCACCCCCTGTTGAATGTCCTAATTATTTAtgcaaagataa
agaaaatggcaaTTATGAATATTCATTTTTCGGAGTAGTCAATCCACATT
ACATCTTGCAATGTTCCAATGGTGTTGCATCTTGTCAAACATGTTGGCCT
GGAAACCTCTTCTTTCGTCCTGACTGCAACCAATGTCTTTTCAATTATGA
CGATCAATGCACTGCCACTACAAGCAAAACACCTCAACCAACCACGGCCA
CCACCAcaacaaaactttcaacaaaaacgaCAGCTCAGCCACAAACCACA
CGACTTTCAATCCAATGTCCTCAGAATGAATGCACAAAGAGAGGTTTACA
CTTCAGTGGAAACATTGCTGATCAATCCAACCATCGACAATACATTGCAT
GCTGGGATGGAAAGACAGTCGGTTGTGTAAGGTGTCCTGCAAACTTGGTA
TTTGACGAGATCATGAATGCTTGTGTTTATCCTGTTGCTCCTGACAACAA
TAACGGAGGACTGAATGTCTATctttaaaagttaaaagttcATCAAACAT
ATCCAAAATGATCGAACATTCTAGGACAATATTTACGCGATTTTGGTATT
TAGCTTATATAAGTTTAGTTTTAATAATTTATTAGAATTTATGTTTAATT
GTATATTACCCCattctattttgtaaatatctCGTTAATTCTCCGCTATT
CCAATATAAATTACTGTCGTTGATTAGAAAATTTCGTAAAAAGAAGAATT
CCAAG
Run BLAST on NCBI

transcript from alignment at sc0000506:168122..171686+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024630 ID=TCONS_00024630|Name=TCONS_00024630|organism=Clytia hemisphaerica|type=transcript|length=3565bp|location=Sequence derived from alignment at sc0000506:168122..171686+ (Clytia hemisphaerica)
CTGTTTAATCACACAAAATTACAGTCGAAACTGATGGGGATTTAAAGAGG
TACGTCATCAACATTTTTGTATCTAAGGGTGATCAAAACGAAACGCAGGG
TGTCATCAATTAAGAAAGCGGTTCAAGTTAAGTGGTGACCAATTTGATAC
ATATGTTCAAAAACAACATAaagggaagaaaattttatctttGCAAGATC
CCTATAAAAAACCAACATTTTCAATATTGCAACCTCATTCCCCacccaaa
aagttttttataagggACCAATAGGTTATGTATATTTTGGCATCAGAACC
AATATCAGAGTTCCTTTTTGAAAAAGTATCTTAATTAAACGAGGCGTCAA
ATCGAGGATTGATTAGACTTGAACGTAATGTATTTTTAAATGACTTTTTA
AATGATGTCATTAAAGTATGCAGAGTTCCAAAACAGAACAATCAAGAGAT
GGCCTATTTAAATGACACTTTCGAAAGGGGTTGTTCATCATTTACCACTG
AACACTAAACAAGTAAACACAACAAAACAACAACTTCACCAACAAACAAA
CAACCATGCAACCAACATTTATTACCGTCTTATGCCTTGTATGTTTAGGT
AAGtcttattttttgttaattAATTTTCTACTACTCCCTGTTTTGCTGGA
CTTGGTGTGATTATTTTATCGCTTCTGGCCTGAGTAAAGAATTGCTCAGT
TAAGTAACATTATAAATAAGgtactgtataccttgacacgaggaaaattt
tttcctttatGCTTTTACTGGATCACCAGCGTATCCAGTGAAACAGGGGT
TATTCAAGGTTATCATTCGAATTCTTGTTTCTaggtatattatattatat
gtAACGTGTTCGAGCACAACTAGGNTTATCATTCGAATTCTTGTTTCTag
gtatattatattatatgtAACGTGTTCGAGCACCACTAgcgaaaatttct
ttaaatataatatctatgcctagtttataaaaaaggtcagaaaaacaatt
tcatgaatttagtactttaatcgtagaaattttagcgtatattagcgagt
caggaaaatcttgatttttttggatttattttagcgaatcacgatttcaa
aaagtttcgcgtggataaattttagcgaattctcgtattacattattgac
tgaattcgttttctagcatttctttgcactgaaacccttcctattgataa
aaatgtatcaaggcagtataaccagaaatttcgcgcggataaattttagc
gatctgttgaTTCGGCGtgtttagcgagatttattttagcgaaaataggg
aaaactcgctaaaacgctaaaattagtcccgctaaaatttctacgattaa
agtagcattcgaaaaattaaacttttgcCAATCTAAAACCACTAACTCAC
TCGAGACTAGCTTACTATTGGCATGAGTTGTGACGGACATCAATGGACTA
GATAGCAGCGTGAataaatttcgacattaaaaccAATCCATTACAGTAGC
CTAACGTTCGAAGAAGCAAGCCAAAAAGAAAGGGAGAAAGAATAAAACTA
GCGAAAAATGACGGACGGATGCAGCAGCCTTCTAATATCCCCTCTTCGGA
AATATTACGAGATAAAGTTTGTTCGAAGatcatttcatttttatcttttt
catgtCTCACAAAAAAACGATTAAGGAAGCTATTATAACTGCTCAAAATt
cctttacaattttcaaataGCGTAGTTGATGATACCTTTTGTCATAACGA
GGCACTTAAGCatattttaagtattttaaTGTGAATCAAATGAAGCTTAA
GGGGGTCTTTATTATTGAATTTATCCAAGCCTCGTTACAAAATAAGCTTA
ATGATTGCGTCGTTATGCAATGTCAAATGGAAAGAGGGTTCAATTCTTGC
AAAATGGATCATTTTTTGCTCCACCGTAATATGCGTAAAATTCTAACCAT
TTTCACTCTCCTTTACTTCAGGTTTAACCAGGAAGACACAATCGTTTGTT
ATCACACCACCCCCTGTTGAATGTAAGTTcagtttcaagtttttattgGC
CATGATTCCAGTGACATCATTTGCGTAAGAAGCACATCCCTTTAGATAAA
AATTATTCCGCTTAAATCGGGGTGCCTGGTGCACTGTAGATAACTTATAT
CTTATCCACCATAAGTGATCAAATTGGAGAATATGATAAAATGTCTTTCT
GTGTTTCCATGACGCCAGTCACATTATCTCCTTATAAGGGTGCACGTGAC
AAACCCTTGTGTGATCCaccaatttttcattatttgtaGCATTATCAATC
ATCCGTGTTACATTTTAACAAAGCTTTTTATGTAATAGTCATTAATGTTA
ATTAGGGTTTCAAAATACACTGGAAGAATCTtgtaaaaatctatttttgt
GAATTCTATATTAGTCAATATAGTTTATAAAAATGGTTACGGCAACAAAT
GAACTAATTATAAAGTTTGACCAAATTCATTTCTAGGTCCTAATTATTTA
tgcaaagataaagaaaatggcaaTTATGAATATTCATTTTTCGGAGTAGT
CAATCCACATTACATCTTGCAATGTTCCAATGGTGTTGCATCTTGTCAAA
CATGTTGGCCTGGAAACCTCTTCTTTCGTCCTGACTGCAACCAATGTCTT
TTCAATTATGACGGTAAATTGATATATTTGGATCTTCCCATAATCTTTGC
ATGAGGAAACTCTCATTCTACTTTCTCCTAAGAAACTTGTTATATAACCT
AAAAACATCACCAACCTAGCTGTTACTGTACTGATACAATTATTGTTTTA
GTATTTATTGATTTACGGCTGAGCATAATACCAGGTTTTTCTGGCACAAT
ATACTCCAATTCGTCGCTGGTGACATTACACAGCTCGATGGTTTTAGCAG
GGTAACTCATTAAGTGCCATCACTCcgtaacttcaaattttcaagatcTA
CCGGTTCGGTAGATGATCGAACTAATTGAAGAATTATAATTCAAATTGTT
CATAACCTTTAGATCAATGCACTGCCACTACAAGCAAAACACCTCAACCA
ACCACGGCCACCACCAcaacaaaactttcaacaaaaacgaCAGCTCAGCC
ACAAACCACACGACTTTCAATCCAATGTCCTCAGAATGAATGCACAAAGA
GAGGTTTACACTTCAGTGGAAACATTGCTGATCAATCCAACCATCGACAA
TACATTGCATGCTGGGATGGAAAGACAGTCGGTTGTGTAAGGTGTCCTGC
AAACTTGGTATTTGACGAGATCATGAATGCTTGTGTTTATCCTGTTGCTC
CTGACAACAATAACGGAGGACTGAATGTCTATctttaaaagttaaaagtt
cATCAAACATATCCAAAATGATCGAACATTCTAGGACAATATTTACGCGA
TTTTGGTATTTAGCTTATATAAGTTTAGTTTTAATAATTTATTAGAATTT
ATGTTTAATTGTATATTACCCCattctattttgtaaatatctCGTTAATT
CTCCGCTATTCCAATATAAATTACTGTCGTTGATTAGAAAATTTCGTAAA
AAGAAGAATTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013834XLOC_013834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024630-exon-sc0000506-1491911889:168122..168170TCONS_00024630-exon-sc0000506-1491911889:168122..168170Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1510915933:168122..168170TCONS_00024630-exon-sc0000506-1510915933:168122..168170Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1575043694:168122..168170TCONS_00024630-exon-sc0000506-1575043694:168122..168170Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1491911889:168545..168719TCONS_00024630-exon-sc0000506-1491911889:168545..168719Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1510915933:168545..168719TCONS_00024630-exon-sc0000506-1510915933:168545..168719Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1575043694:168545..168719TCONS_00024630-exon-sc0000506-1575043694:168545..168719Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1491911889:170093..170143TCONS_00024630-exon-sc0000506-1491911889:170093..170143Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1510915933:170093..170143TCONS_00024630-exon-sc0000506-1510915933:170093..170143Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1575043694:170093..170143TCONS_00024630-exon-sc0000506-1575043694:170093..170143Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1491911889:170608..170784TCONS_00024630-exon-sc0000506-1491911889:170608..170784Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1510915933:170608..170784TCONS_00024630-exon-sc0000506-1510915933:170608..170784Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1575043694:170608..170784TCONS_00024630-exon-sc0000506-1575043694:170608..170784Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1491911889:171134..171686TCONS_00024630-exon-sc0000506-1491911889:171134..171686Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1510915933:171134..171686TCONS_00024630-exon-sc0000506-1510915933:171134..171686Clytia hemisphaericaexon
TCONS_00024630-exon-sc0000506-1575043694:171134..171686TCONS_00024630-exon-sc0000506-1575043694:171134..171686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:168122..171686 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.526815	0	0	0	0	1.06029	1.13785	2.80347	0	0	0	0	0.189173	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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