TCONS_00024631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024631
Unique NameTCONS_00024631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024631 ID=TCONS_00024631|Name=TCONS_00024631|organism=Clytia hemisphaerica|type=transcript|length=986bp
AATCACACAAAATTACAGTCGAAACTGATGGGGATTTAAAGAGAACAATC
AAGAGATGGCCTATTTAAATGACACTTTCGAAAGGGGTTGTTCATCATTT
ACCACTGAACACTAAACAAGTAAACACAACAAAACAACAACTTCACCAAC
AAACAAACAACCATGCAACCAACATTTATTACCGTCTTATGCCTTGTATG
TTTAGGTTTAACCAGGAAGACACAATCGTTTGTTATCACACCACCCCCTG
TTGAATGTCCTAATTATTTAtgcaaagataaagaaaatggcaaTTATGAA
TATTCATTTTTCGGAGTAGTCAATCCACATTACATCTTGCAATGTTCCAA
TGGTGTTGCATCTTGTCAAACATGTTGGCCTGGAAACCTCTTCTTTCGTC
CTGACTGCAACCAATGTCTTTTCAATTATGACGATCAATGCACTGCCACT
ACAAGCAAAACACCTCAACCAACCACGGCCACCACCAcaacaaaactttc
aacaaaaacgaCAGCTCAGCCACAAACCACACGACTTTCAATCCAATGTC
CTCAGAATGAATGCACAAAGAGAGGTTTACACTTCAGTGGAAACATTGCT
GATCAATCCAACCATCGACAATACATTGCATGCTGGGATGGAAAGACAGT
CGGTTGTGTAAGGTGTCCTGCAAACTTGGTATTTGACGAGATCATGAATG
CTTGTGTTTATCCTGTTGCTCCTGACAACAATAACGGAGGACTGAATGTC
TATctttaaaagttaaaagttcATCAAACATATCCAAAATGATCGAACAT
TCTAGGACAATATTTACGCGATTTTGGTATTTAGCTTATATAAGTTTAGT
TTTAATAATTTATTAGAATTTATGTTTAATTGTATATTACCCCattctat
tttgtaaatatctCGTTAATTCTCCGCTATTCCAATATAAATTACTGTCG
TTGATTAGAAAATTTCGTAAAAAGAAGAATTCCAAG
Run BLAST on NCBI

protein sequence of TCONS_00024631-protein

>TCONS_00024631-protein ID=TCONS_00024631-protein|Name=TCONS_00024631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MQPTFITVLCLVCLGLTRKTQSFVITPPPVECPNYLCKDKENGNYEYSFF
GVVNPHYILQCSNGVASCQTCWPGNLFFRPDCNQCLFNYDDQCTATTSKT
PQPTTATTTTKLSTKTTAQPQTTRLSIQCPQNECTKRGLHFSGNIADQSN
HRQYIACWDGKTVGCVRCPANLVFDEIMNACVYPVAPDNNNGGLNVYL
Run BLAST on NCBI

transcript from alignment at sc0000506:168128..171686+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024631 ID=TCONS_00024631|Name=TCONS_00024631|organism=Clytia hemisphaerica|type=transcript|length=3559bp|location=Sequence derived from alignment at sc0000506:168128..171686+ (Clytia hemisphaerica)
AATCACACAAAATTACAGTCGAAACTGATGGGGATTTAAAGAGGTACGTC
ATCAACATTTTTGTATCTAAGGGTGATCAAAACGAAACGCAGGGTGTCAT
CAATTAAGAAAGCGGTTCAAGTTAAGTGGTGACCAATTTGATACATATGT
TCAAAAACAACATAaagggaagaaaattttatctttGCAAGATCCCTATA
AAAAACCAACATTTTCAATATTGCAACCTCATTCCCCacccaaaaagttt
tttataagggACCAATAGGTTATGTATATTTTGGCATCAGAACCAATATC
AGAGTTCCTTTTTGAAAAAGTATCTTAATTAAACGAGGCGTCAAATCGAG
GATTGATTAGACTTGAACGTAATGTATTTTTAAATGACTTTTTAAATGAT
GTCATTAAAGTATGCAGAGTTCCAAAACAGAACAATCAAGAGATGGCCTA
TTTAAATGACACTTTCGAAAGGGGTTGTTCATCATTTACCACTGAACACT
AAACAAGTAAACACAACAAAACAACAACTTCACCAACAAACAAACAACCA
TGCAACCAACATTTATTACCGTCTTATGCCTTGTATGTTTAGGTAAGtct
tattttttgttaattAATTTTCTACTACTCCCTGTTTTGCTGGACTTGGT
GTGATTATTTTATCGCTTCTGGCCTGAGTAAAGAATTGCTCAGTTAAGTA
ACATTATAAATAAGgtactgtataccttgacacgaggaaaattttttcct
ttatGCTTTTACTGGATCACCAGCGTATCCAGTGAAACAGGGGTTATTCA
AGGTTATCATTCGAATTCTTGTTTCTaggtatattatattatatgtAACG
TGTTCGAGCACAACTAGGNTTATCATTCGAATTCTTGTTTCTaggtatat
tatattatatgtAACGTGTTCGAGCACCACTAgcgaaaatttctttaaat
ataatatctatgcctagtttataaaaaaggtcagaaaaacaatttcatga
atttagtactttaatcgtagaaattttagcgtatattagcgagtcaggaa
aatcttgatttttttggatttattttagcgaatcacgatttcaaaaagtt
tcgcgtggataaattttagcgaattctcgtattacattattgactgaatt
cgttttctagcatttctttgcactgaaacccttcctattgataaaaatgt
atcaaggcagtataaccagaaatttcgcgcggataaattttagcgatctg
ttgaTTCGGCGtgtttagcgagatttattttagcgaaaatagggaaaact
cgctaaaacgctaaaattagtcccgctaaaatttctacgattaaagtagc
attcgaaaaattaaacttttgcCAATCTAAAACCACTAACTCACTCGAGA
CTAGCTTACTATTGGCATGAGTTGTGACGGACATCAATGGACTAGATAGC
AGCGTGAataaatttcgacattaaaaccAATCCATTACAGTAGCCTAACG
TTCGAAGAAGCAAGCCAAAAAGAAAGGGAGAAAGAATAAAACTAGCGAAA
AATGACGGACGGATGCAGCAGCCTTCTAATATCCCCTCTTCGGAAATATT
ACGAGATAAAGTTTGTTCGAAGatcatttcatttttatctttttcatgtC
TCACAAAAAAACGATTAAGGAAGCTATTATAACTGCTCAAAATtccttta
caattttcaaataGCGTAGTTGATGATACCTTTTGTCATAACGAGGCACT
TAAGCatattttaagtattttaaTGTGAATCAAATGAAGCTTAAGGGGGT
CTTTATTATTGAATTTATCCAAGCCTCGTTACAAAATAAGCTTAATGATT
GCGTCGTTATGCAATGTCAAATGGAAAGAGGGTTCAATTCTTGCAAAATG
GATCATTTTTTGCTCCACCGTAATATGCGTAAAATTCTAACCATTTTCAC
TCTCCTTTACTTCAGGTTTAACCAGGAAGACACAATCGTTTGTTATCACA
CCACCCCCTGTTGAATGTAAGTTcagtttcaagtttttattgGCCATGAT
TCCAGTGACATCATTTGCGTAAGAAGCACATCCCTTTAGATAAAAATTAT
TCCGCTTAAATCGGGGTGCCTGGTGCACTGTAGATAACTTATATCTTATC
CACCATAAGTGATCAAATTGGAGAATATGATAAAATGTCTTTCTGTGTTT
CCATGACGCCAGTCACATTATCTCCTTATAAGGGTGCACGTGACAAACCC
TTGTGTGATCCaccaatttttcattatttgtaGCATTATCAATCATCCGT
GTTACATTTTAACAAAGCTTTTTATGTAATAGTCATTAATGTTAATTAGG
GTTTCAAAATACACTGGAAGAATCTtgtaaaaatctatttttgtGAATTC
TATATTAGTCAATATAGTTTATAAAAATGGTTACGGCAACAAATGAACTA
ATTATAAAGTTTGACCAAATTCATTTCTAGGTCCTAATTATTTAtgcaaa
gataaagaaaatggcaaTTATGAATATTCATTTTTCGGAGTAGTCAATCC
ACATTACATCTTGCAATGTTCCAATGGTGTTGCATCTTGTCAAACATGTT
GGCCTGGAAACCTCTTCTTTCGTCCTGACTGCAACCAATGTCTTTTCAAT
TATGACGGTAAATTGATATATTTGGATCTTCCCATAATCTTTGCATGAGG
AAACTCTCATTCTACTTTCTCCTAAGAAACTTGTTATATAACCTAAAAAC
ATCACCAACCTAGCTGTTACTGTACTGATACAATTATTGTTTTAGTATTT
ATTGATTTACGGCTGAGCATAATACCAGGTTTTTCTGGCACAATATACTC
CAATTCGTCGCTGGTGACATTACACAGCTCGATGGTTTTAGCAGGGTAAC
TCATTAAGTGCCATCACTCcgtaacttcaaattttcaagatcTACCGGTT
CGGTAGATGATCGAACTAATTGAAGAATTATAATTCAAATTGTTCATAAC
CTTTAGATCAATGCACTGCCACTACAAGCAAAACACCTCAACCAACCACG
GCCACCACCAcaacaaaactttcaacaaaaacgaCAGCTCAGCCACAAAC
CACACGACTTTCAATCCAATGTCCTCAGAATGAATGCACAAAGAGAGGTT
TACACTTCAGTGGAAACATTGCTGATCAATCCAACCATCGACAATACATT
GCATGCTGGGATGGAAAGACAGTCGGTTGTGTAAGGTGTCCTGCAAACTT
GGTATTTGACGAGATCATGAATGCTTGTGTTTATCCTGTTGCTCCTGACA
ACAATAACGGAGGACTGAATGTCTATctttaaaagttaaaagttcATCAA
ACATATCCAAAATGATCGAACATTCTAGGACAATATTTACGCGATTTTGG
TATTTAGCTTATATAAGTTTAGTTTTAATAATTTATTAGAATTTATGTTT
AATTGTATATTACCCCattctattttgtaaatatctCGTTAATTCTCCGC
TATTCCAATATAAATTACTGTCGTTGATTAGAAAATTTCGTAAAAAGAAG
AATTCCAAG

Coding sequence (CDS) from alignment at sc0000506:168128..171686+

>TCONS_00024631 ID=TCONS_00024631|Name=TCONS_00024631|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0000506:168128..171686+ (Clytia hemisphaerica)
ATGCAACCAACATTTATTACCGTCTTATGCCTTGTATGTTTAGGTTTAAC
CAGGAAGACACAATCGTTTGTTATCACACCACCCCCTGTTGAATGTCCTA
ATTATTTAtgcaaagataaagaaaatggcaaTTATGAATATTCATTTTTC
GGAGTAGTCAATCCACATTACATCTTGCAATGTTCCAATGGTGTTGCATC
TTGTCAAACATGTTGGCCTGGAAACCTCTTCTTTCGTCCTGACTGCAACC
AATGTCTTTTCAATTATGACGATCAATGCACTGCCACTACAAGCAAAACA
CCTCAACCAACCACGGCCACCACCAcaacaaaactttcaacaaaaacgaC
AGCTCAGCCACAAACCACACGACTTTCAATCCAATGTCCTCAGAATGAAT
GCACAAAGAGAGGTTTACACTTCAGTGGAAACATTGCTGATCAATCCAAC
CATCGACAATACATTGCATGCTGGGATGGAAAGACAGTCGGTTGTGTAAG
GTGTCCTGCAAACTTGGTATTTGACGAGATCATGAATGCTTGTGTTTATC
CTGTTGCTCCTGACAACAATAACGGAGGACTGAATGTCTATctttaaATG
CAACCAACATTTATTACCGTCTTATGCCTTGTATGTTTAGGTTTAACCAG
GAAGACACAATCGTTTGTTATCACACCACCCCCTGTTGAATGTCCTAATT
ATTTAtgcaaagataaagaaaatggcaaTTATGAATATTCATTTTTCGGA
GTAGTCAATCCACATTACATCTTGCAATGTTCCAATGGTGTTGCATCTTG
TCAAACATGTTGGCCTGGAAACCTCTTCTTTCGTCCTGACTGCAACCAAT
GTCTTTTCAATTATGACGATCAATGCACTGCCACTACAAGCAAAACACCT
CAACCAACCACGGCCACCACCAcaacaaaactttcaacaaaaacgaCAGC
TCAGCCACAAACCACACGACTTTCAATCCAATGTCCTCAGAATGAATGCA
CAAAGAGAGGTTTACACTTCAGTGGAAACATTGCTGATCAATCCAACCAT
CGACAATACATTGCATGCTGGGATGGAAAGACAGTCGGTTGTGTAAGGTG
TCCTGCAAACTTGGTATTTGACGAGATCATGAATGCTTGTGTTTATCCTG
TTGCTCCTGACAACAATAACGGAGGACTGAATGTCTATctttaaATGCAA
CCAACATTTATTACCGTCTTATGCCTTGTATGTTTAGGTTTAACCAGGAA
GACACAATCGTTTGTTATCACACCACCCCCTGTTGAATGTCCTAATTATT
TAtgcaaagataaagaaaatggcaaTTATGAATATTCATTTTTCGGAGTA
GTCAATCCACATTACATCTTGCAATGTTCCAATGGTGTTGCATCTTGTCA
AACATGTTGGCCTGGAAACCTCTTCTTTCGTCCTGACTGCAACCAATGTC
TTTTCAATTATGACGATCAATGCACTGCCACTACAAGCAAAACACCTCAA
CCAACCACGGCCACCACCAcaacaaaactttcaacaaaaacgaCAGCTCA
GCCACAAACCACACGACTTTCAATCCAATGTCCTCAGAATGAATGCACAA
AGAGAGGTTTACACTTCAGTGGAAACATTGCTGATCAATCCAACCATCGA
CAATACATTGCATGCTGGGATGGAAAGACAGTCGGTTGTGTAAGGTGTCC
TGCAAACTTGGTATTTGACGAGATCATGAATGCTTGTGTTTATCCTGTTG
CTCCTGACAACAATAACGGAGGACTGAATGTCTATctttaaATGCAACCA
ACATTTATTACCGTCTTATGCCTTGTATGTTTAGGTTTAACCAGGAAGAC
ACAATCGTTTGTTATCACACCACCCCCTGTTGAATGTCCTAATTATTTAt
gcaaagataaagaaaatggcaaTTATGAATATTCATTTTTCGGAGTAGTC
AATCCACATTACATCTTGCAATGTTCCAATGGTGTTGCATCTTGTCAAAC
ATGTTGGCCTGGAAACCTCTTCTTTCGTCCTGACTGCAACCAATGTCTTT
TCAATTATGACGATCAATGCACTGCCACTACAAGCAAAACACCTCAACCA
ACCACGGCCACCACCAcaacaaaactttcaacaaaaacgaCAGCTCAGCC
ACAAACCACACGACTTTCAATCCAATGTCCTCAGAATGAATGCACAAAGA
GAGGTTTACACTTCAGTGGAAACATTGCTGATCAATCCAACCATCGACAA
TACATTGCATGCTGGGATGGAAAGACAGTCGGTTGTGTAAGGTGTCCTGC
AAACTTGGTATTTGACGAGATCATGAATGCTTGTGTTTATCCTGTTGCTC
CTGACAACAATAACGGAGGACTGAATGTCTATctttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013834XLOC_013834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024631-exon-sc0000506-1491911889:168128..168170TCONS_00024631-exon-sc0000506-1491911889:168128..168170Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1510915933:168128..168170TCONS_00024631-exon-sc0000506-1510915933:168128..168170Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1575043694:168128..168170TCONS_00024631-exon-sc0000506-1575043694:168128..168170Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1491911889:168558..168719TCONS_00024631-exon-sc0000506-1491911889:168558..168719Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1510915933:168558..168719TCONS_00024631-exon-sc0000506-1510915933:168558..168719Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1575043694:168558..168719TCONS_00024631-exon-sc0000506-1575043694:168558..168719Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1491911889:170093..170143TCONS_00024631-exon-sc0000506-1491911889:170093..170143Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1510915933:170093..170143TCONS_00024631-exon-sc0000506-1510915933:170093..170143Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1575043694:170093..170143TCONS_00024631-exon-sc0000506-1575043694:170093..170143Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1491911889:170608..170784TCONS_00024631-exon-sc0000506-1491911889:170608..170784Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1510915933:170608..170784TCONS_00024631-exon-sc0000506-1510915933:170608..170784Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1575043694:170608..170784TCONS_00024631-exon-sc0000506-1575043694:170608..170784Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1491911889:171134..171686TCONS_00024631-exon-sc0000506-1491911889:171134..171686Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1510915933:171134..171686TCONS_00024631-exon-sc0000506-1510915933:171134..171686Clytia hemisphaericaexon
TCONS_00024631-exon-sc0000506-1575043694:171134..171686TCONS_00024631-exon-sc0000506-1575043694:171134..171686Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024631-proteinTCONS_00024631-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:168128..171686 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.821878	0.445256	0.361889	0.354052	0.0615749	0.194629	4.73467e-06	0.879313	0.153907	0	0.185038	0.152998	131.96	77.8607	42.1821	27.0228	15.1134	83.8285	0.922212	1.01582	0.0882932	0	0.314116	0.475962	0.392184	0.262511	0.0626088	0.0668178	0.202716	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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