TCONS_00024633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024633
Unique NameTCONS_00024633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024633 ID=TCONS_00024633|Name=TCONS_00024633|organism=Clytia hemisphaerica|type=transcript|length=2189bp
ATCGAAATCAATCgcatggaattttttttcaaagatttattCGCATTGAG
GTCAAAACATAGTGTACTGCAAGATGACAAAAGACGTCAAGTTTTTAGAA
ATAGAATTCGAACAAGATGAAACTGAAGACCTGTTTGAAACAAAAGAGGT
TTACAAAAATAATTACCGTTTATTGGTGATGTTGAAATACATATACATTG
GAGGTGCTGATATCGGTTTTTGGTGGTCCGTCTGGCTGCTGTCGGATTTT
TACCGTCCCATACAAACATATGGTCTTTACTCCTATCTACGTGGATATGG
CCTCATCATTTTTGCCAATCTCTTGTATTTGATTCTCCGTGTAGCATTCA
AAGATACTTTCAGCGTCTTTTGGGAAACTCATCATCGGTCAGTATACCCG
ACAGCTATCGTGACATACAAGAGAGTATACCAAcaaaagagtttgaaatt
tcgcCTCATCAAAAAGACCTTTCCGATCTGTATCTATATCCTAGTTATTG
GTTTCATACAAATATGGAGAGGTTTGTTCGCCACTTTTGGAGTCCTGATT
GATTTGCTGCACACCAAGTATTCAGTGAATCCCATCTTGAGTTGTGTTGT
AGCACAAATGTTTGTGGCCTTGACGTTGGCTTTCACACAGAAAAACAATG
CCATCAATCTTTGCCCTACACACAAAATGTACAAATACGATGAGTTATAT
TTTACAGATCATTTATTCTTTTTGAATCTTTTCGGAAATTTTCGTCAACC
GAAGCCTTCAGAAGTAAGCCATCAAGCACCCGAAGTGCTTGAACATTTCT
GTGAGACAATACAAAACCCAAACTTTCTTGATGTACCTGGTACACCAAAC
CTTTCAGCTTCCCGTCTGTCAGATGGTGATTTTGACGTGGTGGAATTTGC
GACCGCGCGACTGATCAATGCACTTCAACGAAACCGTTTACGAGAAAAGT
TCAAACAGTCTTGTACTAGTCTATCTTCATTGCGACAGGAAGGTGAAAAT
TTTGATCCTGTTAACACATGGAAAATGGTGATCCAACTTGTACTGGAAAA
ACAGGAATTCGAAGAAGGGACtaaagtgacgtcatcaaagaaAATCTCCC
TTCAATCATCTAGAAAGATATCAGTGCATACAAGGGAAACAAAAAAAAGT
CGTAAAATATCGAGCGTCCTTGTGACGCCTCGATCTGCACCACTTACGAG
AAAAATGTCCACAACTCACGATGCACCTCAAGAGACCCATAAAGCAATGC
GAAAGAGCAACCACTTATCCCCTTTTGACGCCATGCCTGGTGGTGGAATC
CGTGTCAATGTCAGAGCGTTGGAAGCTTTGCAGAGTGATTCTAGCTCGGA
TGAGGAACTGGCTGCCTTGGAAACCAAGGACCAATCAGATGATGAAATAA
AGACCAGCACTATGGCAACCGATCAATCTCTACATACAACAACAACCAAG
GTTGAACAACCTTCTCATCCCAAAAAGCGATTAGCATCATCACTCAAAAG
ACCTCATGTGCCAAATCTTTTACAGAGGGATAATATAGTAACACTGAGAG
AAAGATACATGATCAAGTTTTTCGGTTGGCTGTATGCTATCCATCATCGA
CAAGTTTTCCTTCATATTTTTGGTGGGCTTTTCTGGAGCACAACATGGAA
ATTGTTCGATTTTGCAACAGAATCTATTTTCactaaaaccgcaagtgata
TTCCAGGACTTGTTTTGATTGccattttttgtcattctatgaACCATTTG
GTTTTGTTTCGGTTCAAAGAGATGGCGTCGAAAATTCATTGGAAAACATT
TTGGGAATTCTTTTGTGGATTGTTTACAGTCTGTCTTTGGGCACCTACTT
GGTATGCTTGGGATTTGCTATTGAATTCTATAGGTGCAAGTTATATGGAA
GAAGTTTGTTGGTCTTTGAACGTGTTGGCATTCCTGCCGTTAGCATTGCT
TGGTTTGTCTATAAATACTGCTTTGtgatgtttctttttatattaGTTTG
TGAAAATAATATAATCATTTGAAAAAACTGTTGAATTAGCGCTAAAAGGA
TATTTAATGTTACTTGGTTGGtatgatttgaaagaaattaggCAACCACA
AAGTGCCAATTGTACAAAAATGCTAAGTCTACTTCTACACTGGCGCCCTT
TATTTGTAATAAGTGAAAGAAATTGTAcacccgtgtcac
Run BLAST on NCBI

transcript from alignment at sc0000506:171900..178225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024633 ID=TCONS_00024633|Name=TCONS_00024633|organism=Clytia hemisphaerica|type=transcript|length=6326bp|location=Sequence derived from alignment at sc0000506:171900..178225+ (Clytia hemisphaerica)
ATCGAAATCAATCgcatggaattttttttcaaagatttattCGCATTGAG
GTCAAAACATAGTGTACTGCAAGATGACAAAAGACGTCAAGTTTTTAGAA
ATAGAATTCGAACAAGATGAAACTGAAGACCTGTTTGAAACAAAAGAGGT
TTACAAAAATAGTGAGTGTTTTTTGTTGTTCCTCATGTTGGGTTGAAAGG
GGGAAATATCGATAATAATCGAGACTAATAACTGAACGCCCTTTTTTCAC
ATGTTTGAGTGAACTTACTACATCAACAAATACCAAACTATCAAAAACTG
TGTGTAAATGTCTTCTGTTCTACCAGTTTTCAAATTGTTCAATGATAAAC
TAAGATGGCGGTCAGAAAGGGCGAATCATCGAGTGAACGTTATGATTTTT
TCCGATCAGGTATAAATTTCAATATTCACAGACAGGGTTCCCACTAGCTA
TTACCAAttattttccctgactttttacTTTTGNCGAGACTAATAACTGA
ACGCCCTTTTTTCACATGTTTGAGTGAACTTACTACATCAACAAATACCA
AACTATCAAAAACTGTGTGTAAATGTCTTCTGTTCTACCAGTTTTCAAAT
TGTTCAATGATAAACTAAGATGGCGGTCAGAAAGGGCGAATCATCGAGTG
AACGTTATGATTTTTTCCGATCAGGTATAAATTTCAATATTCACAGACAG
GGTTCCCACTAGCTATTACCAAttattttccctgactttttacTAAAAAA
GTGGTATTTCTCCCTGACAAAAACGCTAAAGTAATTTTTCCCTGACTCTG
AATGGAAAATGACATGTTTTTCCCTGCGACCATCAACACTTTCACGTTGC
AGgatatttctttttgaaagttgAGCAATTCAAGGTCTTTTGAAGTTGGT
TGTCGTGTATTTTTCATTAACTGGAAGGAATCGTCATGGTTGGGTGCGAc
acagaaaattttgaaaaatagagaCTATTAGATTAGATAGAAGCCTTCTG
ATCTTAAGCATTTATAAAACAGAATTCCCTGACTTGGAAAGACATAATAA
AATATTCCCTGACTTTTCCAAGTTTCCCTGACCAGTGGGAAACCCTGCAG
AATGAACAAGGGGGATATGAGAAAGGAGCAAGTTACAAAACTCGGAGTAG
CAGTAGATTATTATAACAAGTAGTCGAAAATAACATTATCCTAATCGTCA
TTCTTGTTAGAATTTTTTTGCTAGTATAGggataaaacaaaaagaaaatc
acaAATCTTTGATAGGCAGGGGTTTCTAATTTAGTGGTTtctgaaaaaga
ttttgtttccCGTTTGGGATGGGAGCCTTATTTAGTTTTCAACAAGGATG
AATATATATACTCTCTCAGTGCATCgatttttcgatcaattttccagtga
ggaGGGAGTCGAATCAGGAAAAAGGGGTGTTTGTTAAACCAAACTTGATC
ATTTTATTCGTTACTTTTGCTTTTAGATTACCGTTTATTGGTGATGTTGA
AATACATATACATTGGAGGTGCTGATATCGGTTTTTGGTGGTCCGTCTGG
CTGCTGTCGGATTTTTACCGTCCCATACAAACATATGGTCTTTACTCCTA
TCTACGTGGATATGGCCTCATCATTTTTGCCAATCTCTTGTATTTGATTC
TCCGTGTAGCATTCAAAGATACTTTCAGCGTCTTTTGGGAAACTCATCAT
CGGTCAGTATACCCGACAGCTATCGTGACATACAAGAGAGTATACCAAca
aaagagtttgaaatttcgcCTCATCAAAAAGACCTTTCCGATCTGTATCT
ATATCCTAGTTATTGGTTTCATACAAATATGGAGAGGTTTGTTCGCCACT
TTTGGAGTCCTGATTGATTTGCTGCACACCAAGTATTCAGTGAATCCCAT
CTTGAGTTGTGTTGTAGCACAAATGTTTGTGGCCTTGACGTTGGCTTTCA
CACAGAAAAACAATGCCATCAATCTTTGCCCTACACACAAAATGTACAAA
TACGATGAGTTATATTTTACAGATCATTTATTCTTTTTGAATCTTTTCGG
AAATTTTCGTCAACCGAAGCCTTCAGAAGTAAGCCATCAAGCACCCGAAG
TGCTTGAACATTTCTGTGAGACAATACAAAACCCAAACTTTCTTGATGTA
CCTGGTACACCAAACCTTTCAGCTTCCCGTCTGTCAGATGGTGATTTTGA
CGTGGTGGAATTTGCGACCGCGCGACTGATCAATGCACTTCAACGAAACC
GTTTACGAGAAAAGTTCAAACAGTCTTGTACTAGTCTATCTTCATTGCGA
CAGGAAGGTGAAAATTTTGATCCTGTTAACACATGGAAAATGGTGATCCA
ACTTGTACTGGAAAAACAGGAATTCGAAGAAGGGACtaaagtgacgtcat
caaagaaAATCTCCCTTCAATCATCTAGAAAGATATCAGTGCATACAAGG
GAAACAAAAAAAAGTCGTAAAATATCGAGCGTCCTTGTGACGCCTCGATC
TGCACCACTTACGAGAAAAATGTCCACAACTCACGATGCACCTCAAGAGA
CCCATAAAGCAATGCGAAAGAGCAACCACTTATCCCCTTTTGACGCCATG
CCTGGTGGTGGAATCCGTGTCAATGTCAGAGCGTTGGAAGCTTTGCAGAG
TGATTCTAGCTCGGATGAGGAACTGGCTGCCTTGGAAACCAAGGACCAAT
CAGATGATGAAATAAAGACCAGCACTATGGCAACCGATCAATCTCTACAT
ACAACAACAACCAAGGTTGAACAACCTTCTCATCCCAAAAAGCGATTAGC
ATCATCACTCAAAAGACCTCATGTGCCAAATCTTTTACAGAGGGATAATA
TAGTAACACTGAGAGAAAGATACATGATCAAGTTTTTCGGTTGGCTGTAT
GCTATCCATCATCGACAAGTTTTCCTTCATATTTTTGGTGGGCTTTTCTG
GAGCACAACATGGAAATTGTTCGATTTTGCAACAGAATCTATTTTCacta
aaaccgcaagtgataTTCCAGGACTTGTTTTGATTGccattttttgtcat
tctatgaACCATTTGGTTTTGTTTCGGTTCAAAGAGATGGCGTCGAAAAT
TCATTGGAAAACATTTTGGGAATTCTTTTGTGGATTGTTTACAGTCTGTC
TTTGGGCACCTACTTGGTATGCTTGGGATTTGCTATTGAATTCTATAGGT
GAGTTAACGCGCACTTCTTCCGCAACATTCATTGAATCACTGCATTTTTT
CCCGAAATCTCATCCCTTCTTCACCACACCCGTGATGAATGAGTCTGATC
ACGTAAAACGGCAAAAACTCGGATAacacgcatccctttgaaaaagtccg
aAGCGagcatcacggctcaaaaatctttcaaatcacgatcgtGTTTTGAC
CTctaatcacgcaatcacgaagaaaaGATTtacaaatcacgtaatcacgc
cagaaaaaagtccctatcacggCCTCACGAAAATCAATTGGTGGCCTCAT
GAACAATTAGACTCCGGGAAAGATATTTGttctgaaatattttgaaaagc
cTTTTTTTTCTCGGAAACAAGGCTCATGGATAGGACAATATTTCTACACG
TATGGTTAGGATTTGCGGTAAATCTCTTATTATCTTATTATCTGTTGTTC
CTGTTTATAAAAAGGGAGAGAAAAGCATTGctaaaaactacagaccagtg
tcTCTCCAGTGTTTAGCAAAGTATTTAAAAAGTGCATTTACGATGTACTT
TACAAGTATTTTGCAAGCAACAATCTCTCTACTCCGTGCCAGTTTTTGGG
AGAGTGATACTTGTGTCTCTCAGTTGTTGTCCATAACGCATGACATCTTT
ACAGGGTTTGACGCTGATCCACCTTTGGACAAGAGGGGAGTGTTTCTTGA
TATCTCAAAGACATTTGATCGAGTCTGAAATGAAGATTTAATCTATAAAC
TCCAGTCTTATGGGGTAACTGGTCCCTTGCTTTcccttttgaaattttct
gtcgAGTAGGTGTCAGAGAGTTGTTTTGAATGGAAAGACCTCTGAGTGGA
AACAAATCAAGGCAGGAGTTCCTCAAGGCTCAATTCTTGGTCCACTGTTT
TTCTAATCTACATCAACGACCTTTCCAACAATCTCGAGAACAAGCCTAAG
ATCTTCGCTGATGACACATCTTTATTTTCGTTAGTGATTGAACAACTTTT
GAGCAGTGAGGAACTAAACAGAGATCTTACAAGTGAGTGGGCtcgtcaat
ggaagatgtcttttaatCCTGATCCTACAAAACAAGCTGTGGAAGTTTAC
TTTTCCAAAAGGCTCTTACCTGCTAATGCTCCTGTTTTATCTTTCAATAA
TGCTGACATAAGAACTGGTGAATGTCAGAAACATCTAGGTCTTCCTTTGG
ACTCCGAACTCTCGTTCAGCCACCATTCAGACGGAAAATAAAAAAGGACT
TCGCAAACATATACCAAGAAAATCTCTGCTTACCTTATATAAATCTTACA
TTAGACAACACTAAGACTATGGGGATATCATATACGACCATCCCGGAAAT
TCGAATTTTGAGCGTAAGCTTGAATCCATCCAATATAATACCGGCTGTGC
TATAACAGGCTGCTTTCGTGGAGCGTCTTTAAGAAAATCTTTATTCTGAA
CTTGGTCTCGAGAGTCTTGCTGatcgttttttaattttgaaaatttagcc
ccttcttatttacgtaactacttACTAGCAAGACTTGCGGCACTAGATAA
tctaagaacaagaaatcctatttatccacTTAATATTCGAACTGAGCGCT
TCCGAGATTCTTTTTATCCTTActgcatacacgttttttttttaagaaac
tagttttaccaagcagcctcaatgtttcttaagaaatcggccttttgagc
cttaaatgtttcttacatgtttctaaactttttgacataatcagcctcat
ggaaggctggattggaaggttattaaaaaaaaaacgaataaaaaatgtta
ttttctcattctcagcctcagcatgtttcttagatgtttcttagttttta
ggcattctgagcctcatgtttcttaaaagtgtgtttctaaagaaaaaaaa
acgtgtatcacaGTGGAATACTCTGGATGGTAGTATAAGAGATCTTCCTT
CAGTATCtaccttcaaaaaagcaatcttcAAGTTTCTAAGGGCTAAACCT
TTCCTGTTTTTGGAGCTTGTGACAACCAGGGTGTGGTCCATCTCGATCGT
ATTCGAGAAGGATTTAGTCACCtcaatgaacataaatttaGACACGGTTT
TCGTGACACCTTAGATCCTTTTGTGCGTGTAGGAcaaattccatcgaaaa
cacTCGACACTTTCTTTTGCACTGCTCTATTTACTCTCAGGCAAGACATC
TTTTGTTCAACAAACTTCAGAACCTATATTGAGCttccaaaagcgcaaaa
actggacaaaacagctgtttctgtctgaaaaacactgtttttaagggtta
atatctcgaggtacagaaatcacctatatttgcaatatatctctaatctt
aattttttgagagctttccaaaaatacacaacaggtctccgttttctcaa
gctaaaattttcattgatttctcaccctatgatttttgcctgagaccgtc
cgtcgtatttgtccgaaaatcacaccaaagtgtccgaaaaaaaattggca
accaagttattttgattcccctaccccttagctttcaaaaaatgtataac
aagtgctttgactaaaaaaatcgagcgatttaacaaatttccccctacta
ctaGACAACCTTTCAACATAAACAACTCAATAATTAATCTTTCCATTGAA
TTTGTTCTTGACTCTGAGAGGTTTAGTGGTGCCTTATCTTACTTTCTTAT
TTTAGTTCGAACCCCCatccgtttatttggaacctaagaacAAGTGTAAT
GTAGTTTCTCAGATTGtaattgtaaagaaaaaaatggacTTCTTTGAATT
TCTGATTTATTCTTTTATAGGTGCAAGTTATATGGAAGAAGTTTGTTGGT
CTTTGAACGTGTTGGCATTCCTGCCGTTAGCATTGCTTGGTTTGTCTATA
AATACTGCTTTGtgatgtttctttttatattaGTTTGTGAAAATAATATA
ATCATTTGAAAAAACTGTTGAATTAGCGCTAAAAGGATATTTAATGTTAC
TTGGTTGGtatgatttgaaagaaattaggCAACCACAAAGTGCCAATTGT
ACAAAAATGCTAAGTCTACTTCTACACTGGCGCCCTTTATTTGTAATAAG
TGAAAGAAATTGTAcacccgtgtcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013835XLOC_013835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024633-exon-sc0000506-1491911889:171900..172060TCONS_00024633-exon-sc0000506-1491911889:171900..172060Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1510915933:171900..172060TCONS_00024633-exon-sc0000506-1510915933:171900..172060Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1575043694:171900..172060TCONS_00024633-exon-sc0000506-1575043694:171900..172060Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1491911889:173376..175097TCONS_00024633-exon-sc0000506-1491911889:173376..175097Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1510915933:173376..175097TCONS_00024633-exon-sc0000506-1510915933:173376..175097Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1575043694:173376..175097TCONS_00024633-exon-sc0000506-1575043694:173376..175097Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1491911889:177920..178225TCONS_00024633-exon-sc0000506-1491911889:177920..178225Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1510915933:177920..178225TCONS_00024633-exon-sc0000506-1510915933:177920..178225Clytia hemisphaericaexon
TCONS_00024633-exon-sc0000506-1575043694:177920..178225TCONS_00024633-exon-sc0000506-1575043694:177920..178225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:171900..178225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0398702	4.15375	12.4439	11.4137	7.43293	4.06441	10.1597	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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