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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024635 ID=TCONS_00024635|Name=TCONS_00024635|organism=Clytia hemisphaerica|type=transcript|length=2101bp
GTTCAATGATAAACTAAGATGGCGGTCAGAAAGGGCGAATCATCGAGTGA
ACGTTATGATTTTTTCCGATCAGATTACCGTTTATTGGTGATGTTGAAAT
ACATATACATTGGAGGTGCTGATATCGGTTTTTGGTGGTCCGTCTGGCTG
CTGTCGGATTTTTACCGTCCCATACAAACATATGGTCTTTACTCCTATCT
ACGTGGATATGGCCTCATCATTTTTGCCAATCTCTTGTATTTGATTCTCC
GTGTAGCATTCAAAGATACTTTCAGCGTCTTTTGGGAAACTCATCATCGG
TCAGTATACCCGACAGCTATCGTGACATACAAGAGAGTATACCAAcaaaa
gagtttgaaatttcgcCTCATCAAAAAGACCTTTCCGATCTGTATCTATA
TCCTAGTTATTGGTTTCATACAAATATGGAGAGGTTTGTTCGCCACTTTT
GGAGTCCTGATTGATTTGCTGCACACCAAGTATTCAGTGAATCCCATCTT
GAGTTGTGTTGTAGCACAAATGTTTGTGGCCTTGACGTTGGCTTTCACAC
AGAAAAACAATGCCATCAATCTTTGCCCTACACACAAAATGTACAAATAC
GATGAGTTATATTTTACAGATCATTTATTCTTTTTGAATCTTTTCGGAAA
TTTTCGTCAACCGAAGCCTTCAGAAGTAAGCCATCAAGCACCCGAAGTGC
TTGAACATTTCTGTGAGACAATACAAAACCCAAACTTTCTTGATGTACCT
GGTACACCAAACCTTTCAGCTTCCCGTCTGTCAGATGGTGATTTTGACGT
GGTGGAATTTGCGACCGCGCGACTGATCAATGCACTTCAACGAAACCGTT
TACGAGAAAAGTTCAAACAGTCTTGTACTAGTCTATCTTCATTGCGACAG
GAAGGTGAAAATTTTGATCCTGTTAACACATGGAAAATGGTGATCCAACT
TGTACTGGAAAAACAGGAATTCGAAGAAGGGACtaaagtgacgtcatcaa
agaaAATCTCCCTTCAATCATCTAGAAAGATATCAGTGCATACAAGGGAA
ACAAAAAAAAGTCGTAAAATATCGAGCGTCCTTGTGACGCCTCGATCTGC
ACCACTTACGAGAAAAATGTCCACAACTCACGATGCACCTCAAGAGACCC
ATAAAGCAATGCGAAAGAGCAACCACTTATCCCCTTTTGACGCCATGCCT
GGTGGTGGAATCCGTGTCAATGTCAGAGCGTTGGAAGCTTTGCAGAGTGA
TTCTAGCTCGGATGAGGAACTGGCTGCCTTGGAAACCAAGGACCAATCAG
ATGATGAAATAAAGACCAGCACTATGGCAACCGATCAATCTCTACATACA
ACAACAACCAAGGTTGAACAACCTTCTCATCCCAAAAAGCGATTAGCATC
ATCACTCAAAAGACCTCATGTGCCAAATCTTTTACAGAGGGATAATATAG
TAACACTGAGAGAAAGATACATGATCAAGTTTTTCGGTTGGCTGTATGCT
ATCCATCATCGACAAGTTTTCCTTCATATTTTTGGTGGGCTTTTCTGGAG
CACAACATGGAAATTGTTCGATTTTGCAACAGAATCTATTTTCactaaaa
ccgcaagtgataTTCCAGGACTTGTTTTGATTGccattttttgtcattct
atgaACCATTTGGTTTTGTTTCGGTTCAAAGAGATGGCGTCGAAAATTCA
TTGGAAAACATTTTGGGAATTCTTTTGTGGATTGTTTACAGTCTGTCTTT
GGGCACCTACTTGGTATGCTTGGGATTTGCTATTGAATTCTATAGGTGCA
AGTTATATGGAAGAAGTTTGTTGGTCTTTGAACGTGTTGGCATTCCTGCC
GTTAGCATTGCTTGGTTTGTCTATAAATACTGCTTTGtgatgtttctttt
tatattaGTTTGTGAAAATAATATAATCATTTGAAAAAACTGTTGAATTA
GCGCTAAAAGGATATTTAATGTTACTTGGTTGGtatgatttgaaagaaat
taggCAACCACAAAGTGCCAATTGTACAAAAATGCTAAGTCTACTTCTAC
ACTGGCGCCCTTTATTTGTAATAAGTGAAAGAAATTGTAcacccgtgtca
c Run BLAST on NCBI transcript from alignment at sc0000506:172236..178225+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024635 ID=TCONS_00024635|Name=TCONS_00024635|organism=Clytia hemisphaerica|type=transcript|length=5990bp|location=Sequence derived from alignment at sc0000506:172236..178225+ (Clytia hemisphaerica)
GTTCAATGATAAACTAAGATGGCGGTCAGAAAGGGCGAATCATCGAGTGA
ACGTTATGATTTTTTCCGATCAGGTATAAATTTCAATATTCACAGACAGG
GTTCCCACTAGCTATTACCAAttattttccctgactttttacTTTTGNCG
AGACTAATAACTGAACGCCCTTTTTTCACATGTTTGAGTGAACTTACTAC
ATCAACAAATACCAAACTATCAAAAACTGTGTGTAAATGTCTTCTGTTCT
ACCAGTTTTCAAATTGTTCAATGATAAACTAAGATGGCGGTCAGAAAGGG
CGAATCATCGAGTGAACGTTATGATTTTTTCCGATCAGGTATAAATTTCA
ATATTCACAGACAGGGTTCCCACTAGCTATTACCAAttattttccctgac
tttttacTAAAAAAGTGGTATTTCTCCCTGACAAAAACGCTAAAGTAATT
TTTCCCTGACTCTGAATGGAAAATGACATGTTTTTCCCTGCGACCATCAA
CACTTTCACGTTGCAGgatatttctttttgaaagttgAGCAATTCAAGGT
CTTTTGAAGTTGGTTGTCGTGTATTTTTCATTAACTGGAAGGAATCGTCA
TGGTTGGGTGCGAcacagaaaattttgaaaaatagagaCTATTAGATTAG
ATAGAAGCCTTCTGATCTTAAGCATTTATAAAACAGAATTCCCTGACTTG
GAAAGACATAATAAAATATTCCCTGACTTTTCCAAGTTTCCCTGACCAGT
GGGAAACCCTGCAGAATGAACAAGGGGGATATGAGAAAGGAGCAAGTTAC
AAAACTCGGAGTAGCAGTAGATTATTATAACAAGTAGTCGAAAATAACAT
TATCCTAATCGTCATTCTTGTTAGAATTTTTTTGCTAGTATAGggataaa
acaaaaagaaaatcacaAATCTTTGATAGGCAGGGGTTTCTAATTTAGTG
GTTtctgaaaaagattttgtttccCGTTTGGGATGGGAGCCTTATTTAGT
TTTCAACAAGGATGAATATATATACTCTCTCAGTGCATCgatttttcgat
caattttccagtgaggaGGGAGTCGAATCAGGAAAAAGGGGTGTTTGTTA
AACCAAACTTGATCATTTTATTCGTTACTTTTGCTTTTAGATTACCGTTT
ATTGGTGATGTTGAAATACATATACATTGGAGGTGCTGATATCGGTTTTT
GGTGGTCCGTCTGGCTGCTGTCGGATTTTTACCGTCCCATACAAACATAT
GGTCTTTACTCCTATCTACGTGGATATGGCCTCATCATTTTTGCCAATCT
CTTGTATTTGATTCTCCGTGTAGCATTCAAAGATACTTTCAGCGTCTTTT
GGGAAACTCATCATCGGTCAGTATACCCGACAGCTATCGTGACATACAAG
AGAGTATACCAAcaaaagagtttgaaatttcgcCTCATCAAAAAGACCTT
TCCGATCTGTATCTATATCCTAGTTATTGGTTTCATACAAATATGGAGAG
GTTTGTTCGCCACTTTTGGAGTCCTGATTGATTTGCTGCACACCAAGTAT
TCAGTGAATCCCATCTTGAGTTGTGTTGTAGCACAAATGTTTGTGGCCTT
GACGTTGGCTTTCACACAGAAAAACAATGCCATCAATCTTTGCCCTACAC
ACAAAATGTACAAATACGATGAGTTATATTTTACAGATCATTTATTCTTT
TTGAATCTTTTCGGAAATTTTCGTCAACCGAAGCCTTCAGAAGTAAGCCA
TCAAGCACCCGAAGTGCTTGAACATTTCTGTGAGACAATACAAAACCCAA
ACTTTCTTGATGTACCTGGTACACCAAACCTTTCAGCTTCCCGTCTGTCA
GATGGTGATTTTGACGTGGTGGAATTTGCGACCGCGCGACTGATCAATGC
ACTTCAACGAAACCGTTTACGAGAAAAGTTCAAACAGTCTTGTACTAGTC
TATCTTCATTGCGACAGGAAGGTGAAAATTTTGATCCTGTTAACACATGG
AAAATGGTGATCCAACTTGTACTGGAAAAACAGGAATTCGAAGAAGGGAC
taaagtgacgtcatcaaagaaAATCTCCCTTCAATCATCTAGAAAGATAT
CAGTGCATACAAGGGAAACAAAAAAAAGTCGTAAAATATCGAGCGTCCTT
GTGACGCCTCGATCTGCACCACTTACGAGAAAAATGTCCACAACTCACGA
TGCACCTCAAGAGACCCATAAAGCAATGCGAAAGAGCAACCACTTATCCC
CTTTTGACGCCATGCCTGGTGGTGGAATCCGTGTCAATGTCAGAGCGTTG
GAAGCTTTGCAGAGTGATTCTAGCTCGGATGAGGAACTGGCTGCCTTGGA
AACCAAGGACCAATCAGATGATGAAATAAAGACCAGCACTATGGCAACCG
ATCAATCTCTACATACAACAACAACCAAGGTTGAACAACCTTCTCATCCC
AAAAAGCGATTAGCATCATCACTCAAAAGACCTCATGTGCCAAATCTTTT
ACAGAGGGATAATATAGTAACACTGAGAGAAAGATACATGATCAAGTTTT
TCGGTTGGCTGTATGCTATCCATCATCGACAAGTTTTCCTTCATATTTTT
GGTGGGCTTTTCTGGAGCACAACATGGAAATTGTTCGATTTTGCAACAGA
ATCTATTTTCactaaaaccgcaagtgataTTCCAGGACTTGTTTTGATTG
ccattttttgtcattctatgaACCATTTGGTTTTGTTTCGGTTCAAAGAG
ATGGCGTCGAAAATTCATTGGAAAACATTTTGGGAATTCTTTTGTGGATT
GTTTACAGTCTGTCTTTGGGCACCTACTTGGTATGCTTGGGATTTGCTAT
TGAATTCTATAGGTGAGTTAACGCGCACTTCTTCCGCAACATTCATTGAA
TCACTGCATTTTTTCCCGAAATCTCATCCCTTCTTCACCACACCCGTGAT
GAATGAGTCTGATCACGTAAAACGGCAAAAACTCGGATAacacgcatccc
tttgaaaaagtccgaAGCGagcatcacggctcaaaaatctttcaaatcac
gatcgtGTTTTGACCTctaatcacgcaatcacgaagaaaaGATTtacaaa
tcacgtaatcacgccagaaaaaagtccctatcacggCCTCACGAAAATCA
ATTGGTGGCCTCATGAACAATTAGACTCCGGGAAAGATATTTGttctgaa
atattttgaaaagccTTTTTTTTCTCGGAAACAAGGCTCATGGATAGGAC
AATATTTCTACACGTATGGTTAGGATTTGCGGTAAATCTCTTATTATCTT
ATTATCTGTTGTTCCTGTTTATAAAAAGGGAGAGAAAAGCATTGctaaaa
actacagaccagtgtcTCTCCAGTGTTTAGCAAAGTATTTAAAAAGTGCA
TTTACGATGTACTTTACAAGTATTTTGCAAGCAACAATCTCTCTACTCCG
TGCCAGTTTTTGGGAGAGTGATACTTGTGTCTCTCAGTTGTTGTCCATAA
CGCATGACATCTTTACAGGGTTTGACGCTGATCCACCTTTGGACAAGAGG
GGAGTGTTTCTTGATATCTCAAAGACATTTGATCGAGTCTGAAATGAAGA
TTTAATCTATAAACTCCAGTCTTATGGGGTAACTGGTCCCTTGCTTTccc
ttttgaaattttctgtcgAGTAGGTGTCAGAGAGTTGTTTTGAATGGAAA
GACCTCTGAGTGGAAACAAATCAAGGCAGGAGTTCCTCAAGGCTCAATTC
TTGGTCCACTGTTTTTCTAATCTACATCAACGACCTTTCCAACAATCTCG
AGAACAAGCCTAAGATCTTCGCTGATGACACATCTTTATTTTCGTTAGTG
ATTGAACAACTTTTGAGCAGTGAGGAACTAAACAGAGATCTTACAAGTGA
GTGGGCtcgtcaatggaagatgtcttttaatCCTGATCCTACAAAACAAG
CTGTGGAAGTTTACTTTTCCAAAAGGCTCTTACCTGCTAATGCTCCTGTT
TTATCTTTCAATAATGCTGACATAAGAACTGGTGAATGTCAGAAACATCT
AGGTCTTCCTTTGGACTCCGAACTCTCGTTCAGCCACCATTCAGACGGAA
AATAAAAAAGGACTTCGCAAACATATACCAAGAAAATCTCTGCTTACCTT
ATATAAATCTTACATTAGACAACACTAAGACTATGGGGATATCATATACG
ACCATCCCGGAAATTCGAATTTTGAGCGTAAGCTTGAATCCATCCAATAT
AATACCGGCTGTGCTATAACAGGCTGCTTTCGTGGAGCGTCTTTAAGAAA
ATCTTTATTCTGAACTTGGTCTCGAGAGTCTTGCTGatcgttttttaatt
ttgaaaatttagccccttcttatttacgtaactacttACTAGCAAGACTT
GCGGCACTAGATAAtctaagaacaagaaatcctatttatccacTTAATAT
TCGAACTGAGCGCTTCCGAGATTCTTTTTATCCTTActgcatacacgttt
tttttttaagaaactagttttaccaagcagcctcaatgtttcttaagaaa
tcggccttttgagccttaaatgtttcttacatgtttctaaactttttgac
ataatcagcctcatggaaggctggattggaaggttattaaaaaaaaaacg
aataaaaaatgttattttctcattctcagcctcagcatgtttcttagatg
tttcttagtttttaggcattctgagcctcatgtttcttaaaagtgtgttt
ctaaagaaaaaaaaacgtgtatcacaGTGGAATACTCTGGATGGTAGTAT
AAGAGATCTTCCTTCAGTATCtaccttcaaaaaagcaatcttcAAGTTTC
TAAGGGCTAAACCTTTCCTGTTTTTGGAGCTTGTGACAACCAGGGTGTGG
TCCATCTCGATCGTATTCGAGAAGGATTTAGTCACCtcaatgaacataaa
tttaGACACGGTTTTCGTGACACCTTAGATCCTTTTGTGCGTGTAGGAca
aattccatcgaaaacacTCGACACTTTCTTTTGCACTGCTCTATTTACTC
TCAGGCAAGACATCTTTTGTTCAACAAACTTCAGAACCTATATTGAGCtt
ccaaaagcgcaaaaactggacaaaacagctgtttctgtctgaaaaacact
gtttttaagggttaatatctcgaggtacagaaatcacctatatttgcaat
atatctctaatcttaattttttgagagctttccaaaaatacacaacaggt
ctccgttttctcaagctaaaattttcattgatttctcaccctatgatttt
tgcctgagaccgtccgtcgtatttgtccgaaaatcacaccaaagtgtccg
aaaaaaaattggcaaccaagttattttgattcccctaccccttagctttc
aaaaaatgtataacaagtgctttgactaaaaaaatcgagcgatttaacaa
atttccccctactactaGACAACCTTTCAACATAAACAACTCAATAATTA
ATCTTTCCATTGAATTTGTTCTTGACTCTGAGAGGTTTAGTGGTGCCTTA
TCTTACTTTCTTATTTTAGTTCGAACCCCCatccgtttatttggaaccta
agaacAAGTGTAATGTAGTTTCTCAGATTGtaattgtaaagaaaaaaatg
gacTTCTTTGAATTTCTGATTTATTCTTTTATAGGTGCAAGTTATATGGA
AGAAGTTTGTTGGTCTTTGAACGTGTTGGCATTCCTGCCGTTAGCATTGC
TTGGTTTGTCTATAAATACTGCTTTGtgatgtttctttttatattaGTTT
GTGAAAATAATATAATCATTTGAAAAAACTGTTGAATTAGCGCTAAAAGG
ATATTTAATGTTACTTGGTTGGtatgatttgaaagaaattaggCAACCAC
AAAGTGCCAATTGTACAAAAATGCTAAGTCTACTTCTACACTGGCGCCCT
TTATTTGTAATAAGTGAAAGAAATTGTAcacccgtgtcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024635-exon-sc0000506-1491911889:172236..172308 | TCONS_00024635-exon-sc0000506-1491911889:172236..172308 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1510915933:172236..172308 | TCONS_00024635-exon-sc0000506-1510915933:172236..172308 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1575043694:172236..172308 | TCONS_00024635-exon-sc0000506-1575043694:172236..172308 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1491911889:173376..175097 | TCONS_00024635-exon-sc0000506-1491911889:173376..175097 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1510915933:173376..175097 | TCONS_00024635-exon-sc0000506-1510915933:173376..175097 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1575043694:173376..175097 | TCONS_00024635-exon-sc0000506-1575043694:173376..175097 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1491911889:177920..178225 | TCONS_00024635-exon-sc0000506-1491911889:177920..178225 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1510915933:177920..178225 | TCONS_00024635-exon-sc0000506-1510915933:177920..178225 | Clytia hemisphaerica | exon |
| TCONS_00024635-exon-sc0000506-1575043694:177920..178225 | TCONS_00024635-exon-sc0000506-1575043694:177920..178225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:172236..178225 + |
Blast
The following BLAST results are available for this feature:
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