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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024637 ID=TCONS_00024637|Name=TCONS_00024637|organism=Clytia hemisphaerica|type=transcript|length=2094bp
GATAAACTAAGATGGCGGTCAGAAAGGGCGAATCATCGAGTGAACGTTAT
GATTTTTTCCGATCAGATTACCGTTTATTGGTGATGTTGAAATACATATA
CATTGGAGGTGCTGATATCGGTTTTTGGTGGTCCGTCTGGCTGCTGTCGG
ATTTTTACCGTCCCATACAAACATATGGTCTTTACTCCTATCTACGTGGA
TATGGCCTCATCATTTTTGCCAATCTCTTGTATTTGATTCTCCGTGTAGC
ATTCAAAGATACTTTCAGCGTCTTTTGGGAAACTCATCATCGGTCAGTAT
ACCCGACAGCTATCGTGACATACAAGAGAGTATACCAAcaaaagagtttg
aaatttcgcCTCATCAAAAAGACCTTTCCGATCTGTATCTATATCCTAGT
TATTGGTTTCATACAAATATGGAGAGGTTTGTTCGCCACTTTTGGAGTCC
TGATTGATTTGCTGCACACCAAGTATTCAGTGAATCCCATCTTGAGTTGT
GTTGTAGCACAAATGTTTGTGGCCTTGACGTTGGCTTTCACACAGAAAAA
CAATGCCATCAATCTTTGCCCTACACACAAAATGTACAAATACGATGAGT
TATATTTTACAGATCATTTATTCTTTTTGAATCTTTTCGGAAATTTTCGT
CAACCGAAGCCTTCAGAAGTAAGCCATCAAGCACCCGAAGTGCTTGAACA
TTTCTGTGAGACAATACAAAACCCAAACTTTCTTGATGTACCTGGTACAC
CAAACCTTTCAGCTTCCCGTCTGTCAGATGGTGATTTTGACGTGGTGGAA
TTTGCGACCGCGCGACTGATCAATGCACTTCAACGAAACCGTTTACGAGA
AAAGTTCAAACAGTCTTGTACTAGTCTATCTTCATTGCGACAGGAAGGTG
AAAATTTTGATCCTGTTAACACATGGAAAATGGTGATCCAACTTGTACTG
GAAAAACAGGAATTCGAAGAAGGGACtaaagtgacgtcatcaaagaaAAT
CTCCCTTCAATCATCTAGAAAGATATCAGTGCATACAAGGGAAACAAAAA
AAAGTCGTAAAATATCGAGCGTCCTTGTGACGCCTCGATCTGCACCACTT
ACGAGAAAAATGTCCACAACTCACGATGCACCTCAAGAGACCCATAAAGC
AATGCGAAAGAGCAACCACTTATCCCCTTTTGACGCCATGCCTGGTGGTG
GAATCCGTGTCAATGTCAGAGCGTTGGAAGCTTTGCAGAGTGATTCTAGC
TCGGATGAGGAACTGGCTGCCTTGGAAACCAAGGACCAATCAGATGATGA
AATAAAGACCAGCACTATGGCAACCGATCAATCTCTACATACAACAACAA
CCAAGGTTGAACAACCTTCTCATCCCAAAAAGCGATTAGCATCATCACTC
AAAAGACCTCATGTGCCAAATCTTTTACAGAGGGATAATATAGTAACACT
GAGAGAAAGATACATGATCAAGTTTTTCGGTTGGCTGTATGCTATCCATC
ATCGACAAGTTTTCCTTCATATTTTTGGTGGGCTTTTCTGGAGCACAACA
TGGAAATTGTTCGATTTTGCAACAGAATCTATTTTCactaaaaccgcaag
tgataTTCCAGGACTTGTTTTGATTGccattttttgtcattctatgaACC
ATTTGGTTTTGTTTCGGTTCAAAGAGATGGCGTCGAAAATTCATTGGAAA
ACATTTTGGGAATTCTTTTGTGGATTGTTTACAGTCTGTCTTTGGGCACC
TACTTGGTATGCTTGGGATTTGCTATTGAATTCTATAGGTGCAAGTTATA
TGGAAGAAGTTTGTTGGTCTTTGAACGTGTTGGCATTCCTGCCGTTAGCA
TTGCTTGGTTTGTCTATAAATACTGCTTTGtgatgtttctttttatatta
GTTTGTGAAAATAATATAATCATTTGAAAAAACTGTTGAATTAGCGCTAA
AAGGATATTTAATGTTACTTGGTTGGtatgatttgaaagaaattaggCAA
CCACAAAGTGCCAATTGTACAAAAATGCTAAGTCTACTTCTACACTGGCG
CCCTTTATTTGTAATAAGTGAAAGAAATTGTAcacccgtgtcac Run BLAST on NCBI transcript from alignment at sc0000506:172508..178225+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024637 ID=TCONS_00024637|Name=TCONS_00024637|organism=Clytia hemisphaerica|type=transcript|length=5718bp|location=Sequence derived from alignment at sc0000506:172508..178225+ (Clytia hemisphaerica)
GATAAACTAAGATGGCGGTCAGAAAGGGCGAATCATCGAGTGAACGTTAT
GATTTTTTCCGATCAGGTATAAATTTCAATATTCACAGACAGGGTTCCCA
CTAGCTATTACCAAttattttccctgactttttacTAAAAAAGTGGTATT
TCTCCCTGACAAAAACGCTAAAGTAATTTTTCCCTGACTCTGAATGGAAA
ATGACATGTTTTTCCCTGCGACCATCAACACTTTCACGTTGCAGgatatt
tctttttgaaagttgAGCAATTCAAGGTCTTTTGAAGTTGGTTGTCGTGT
ATTTTTCATTAACTGGAAGGAATCGTCATGGTTGGGTGCGAcacagaaaa
ttttgaaaaatagagaCTATTAGATTAGATAGAAGCCTTCTGATCTTAAG
CATTTATAAAACAGAATTCCCTGACTTGGAAAGACATAATAAAATATTCC
CTGACTTTTCCAAGTTTCCCTGACCAGTGGGAAACCCTGCAGAATGAACA
AGGGGGATATGAGAAAGGAGCAAGTTACAAAACTCGGAGTAGCAGTAGAT
TATTATAACAAGTAGTCGAAAATAACATTATCCTAATCGTCATTCTTGTT
AGAATTTTTTTGCTAGTATAGggataaaacaaaaagaaaatcacaAATCT
TTGATAGGCAGGGGTTTCTAATTTAGTGGTTtctgaaaaagattttgttt
ccCGTTTGGGATGGGAGCCTTATTTAGTTTTCAACAAGGATGAATATATA
TACTCTCTCAGTGCATCgatttttcgatcaattttccagtgaggaGGGAG
TCGAATCAGGAAAAAGGGGTGTTTGTTAAACCAAACTTGATCATTTTATT
CGTTACTTTTGCTTTTAGATTACCGTTTATTGGTGATGTTGAAATACATA
TACATTGGAGGTGCTGATATCGGTTTTTGGTGGTCCGTCTGGCTGCTGTC
GGATTTTTACCGTCCCATACAAACATATGGTCTTTACTCCTATCTACGTG
GATATGGCCTCATCATTTTTGCCAATCTCTTGTATTTGATTCTCCGTGTA
GCATTCAAAGATACTTTCAGCGTCTTTTGGGAAACTCATCATCGGTCAGT
ATACCCGACAGCTATCGTGACATACAAGAGAGTATACCAAcaaaagagtt
tgaaatttcgcCTCATCAAAAAGACCTTTCCGATCTGTATCTATATCCTA
GTTATTGGTTTCATACAAATATGGAGAGGTTTGTTCGCCACTTTTGGAGT
CCTGATTGATTTGCTGCACACCAAGTATTCAGTGAATCCCATCTTGAGTT
GTGTTGTAGCACAAATGTTTGTGGCCTTGACGTTGGCTTTCACACAGAAA
AACAATGCCATCAATCTTTGCCCTACACACAAAATGTACAAATACGATGA
GTTATATTTTACAGATCATTTATTCTTTTTGAATCTTTTCGGAAATTTTC
GTCAACCGAAGCCTTCAGAAGTAAGCCATCAAGCACCCGAAGTGCTTGAA
CATTTCTGTGAGACAATACAAAACCCAAACTTTCTTGATGTACCTGGTAC
ACCAAACCTTTCAGCTTCCCGTCTGTCAGATGGTGATTTTGACGTGGTGG
AATTTGCGACCGCGCGACTGATCAATGCACTTCAACGAAACCGTTTACGA
GAAAAGTTCAAACAGTCTTGTACTAGTCTATCTTCATTGCGACAGGAAGG
TGAAAATTTTGATCCTGTTAACACATGGAAAATGGTGATCCAACTTGTAC
TGGAAAAACAGGAATTCGAAGAAGGGACtaaagtgacgtcatcaaagaaA
ATCTCCCTTCAATCATCTAGAAAGATATCAGTGCATACAAGGGAAACAAA
AAAAAGTCGTAAAATATCGAGCGTCCTTGTGACGCCTCGATCTGCACCAC
TTACGAGAAAAATGTCCACAACTCACGATGCACCTCAAGAGACCCATAAA
GCAATGCGAAAGAGCAACCACTTATCCCCTTTTGACGCCATGCCTGGTGG
TGGAATCCGTGTCAATGTCAGAGCGTTGGAAGCTTTGCAGAGTGATTCTA
GCTCGGATGAGGAACTGGCTGCCTTGGAAACCAAGGACCAATCAGATGAT
GAAATAAAGACCAGCACTATGGCAACCGATCAATCTCTACATACAACAAC
AACCAAGGTTGAACAACCTTCTCATCCCAAAAAGCGATTAGCATCATCAC
TCAAAAGACCTCATGTGCCAAATCTTTTACAGAGGGATAATATAGTAACA
CTGAGAGAAAGATACATGATCAAGTTTTTCGGTTGGCTGTATGCTATCCA
TCATCGACAAGTTTTCCTTCATATTTTTGGTGGGCTTTTCTGGAGCACAA
CATGGAAATTGTTCGATTTTGCAACAGAATCTATTTTCactaaaaccgca
agtgataTTCCAGGACTTGTTTTGATTGccattttttgtcattctatgaA
CCATTTGGTTTTGTTTCGGTTCAAAGAGATGGCGTCGAAAATTCATTGGA
AAACATTTTGGGAATTCTTTTGTGGATTGTTTACAGTCTGTCTTTGGGCA
CCTACTTGGTATGCTTGGGATTTGCTATTGAATTCTATAGGTGAGTTAAC
GCGCACTTCTTCCGCAACATTCATTGAATCACTGCATTTTTTCCCGAAAT
CTCATCCCTTCTTCACCACACCCGTGATGAATGAGTCTGATCACGTAAAA
CGGCAAAAACTCGGATAacacgcatccctttgaaaaagtccgaAGCGagc
atcacggctcaaaaatctttcaaatcacgatcgtGTTTTGACCTctaatc
acgcaatcacgaagaaaaGATTtacaaatcacgtaatcacgccagaaaaa
agtccctatcacggCCTCACGAAAATCAATTGGTGGCCTCATGAACAATT
AGACTCCGGGAAAGATATTTGttctgaaatattttgaaaagccTTTTTTT
TCTCGGAAACAAGGCTCATGGATAGGACAATATTTCTACACGTATGGTTA
GGATTTGCGGTAAATCTCTTATTATCTTATTATCTGTTGTTCCTGTTTAT
AAAAAGGGAGAGAAAAGCATTGctaaaaactacagaccagtgtcTCTCCA
GTGTTTAGCAAAGTATTTAAAAAGTGCATTTACGATGTACTTTACAAGTA
TTTTGCAAGCAACAATCTCTCTACTCCGTGCCAGTTTTTGGGAGAGTGAT
ACTTGTGTCTCTCAGTTGTTGTCCATAACGCATGACATCTTTACAGGGTT
TGACGCTGATCCACCTTTGGACAAGAGGGGAGTGTTTCTTGATATCTCAA
AGACATTTGATCGAGTCTGAAATGAAGATTTAATCTATAAACTCCAGTCT
TATGGGGTAACTGGTCCCTTGCTTTcccttttgaaattttctgtcgAGTA
GGTGTCAGAGAGTTGTTTTGAATGGAAAGACCTCTGAGTGGAAACAAATC
AAGGCAGGAGTTCCTCAAGGCTCAATTCTTGGTCCACTGTTTTTCTAATC
TACATCAACGACCTTTCCAACAATCTCGAGAACAAGCCTAAGATCTTCGC
TGATGACACATCTTTATTTTCGTTAGTGATTGAACAACTTTTGAGCAGTG
AGGAACTAAACAGAGATCTTACAAGTGAGTGGGCtcgtcaatggaagatg
tcttttaatCCTGATCCTACAAAACAAGCTGTGGAAGTTTACTTTTCCAA
AAGGCTCTTACCTGCTAATGCTCCTGTTTTATCTTTCAATAATGCTGACA
TAAGAACTGGTGAATGTCAGAAACATCTAGGTCTTCCTTTGGACTCCGAA
CTCTCGTTCAGCCACCATTCAGACGGAAAATAAAAAAGGACTTCGCAAAC
ATATACCAAGAAAATCTCTGCTTACCTTATATAAATCTTACATTAGACAA
CACTAAGACTATGGGGATATCATATACGACCATCCCGGAAATTCGAATTT
TGAGCGTAAGCTTGAATCCATCCAATATAATACCGGCTGTGCTATAACAG
GCTGCTTTCGTGGAGCGTCTTTAAGAAAATCTTTATTCTGAACTTGGTCT
CGAGAGTCTTGCTGatcgttttttaattttgaaaatttagccccttctta
tttacgtaactacttACTAGCAAGACTTGCGGCACTAGATAAtctaagaa
caagaaatcctatttatccacTTAATATTCGAACTGAGCGCTTCCGAGAT
TCTTTTTATCCTTActgcatacacgttttttttttaagaaactagtttta
ccaagcagcctcaatgtttcttaagaaatcggccttttgagccttaaatg
tttcttacatgtttctaaactttttgacataatcagcctcatggaaggct
ggattggaaggttattaaaaaaaaaacgaataaaaaatgttattttctca
ttctcagcctcagcatgtttcttagatgtttcttagtttttaggcattct
gagcctcatgtttcttaaaagtgtgtttctaaagaaaaaaaaacgtgtat
cacaGTGGAATACTCTGGATGGTAGTATAAGAGATCTTCCTTCAGTATCt
accttcaaaaaagcaatcttcAAGTTTCTAAGGGCTAAACCTTTCCTGTT
TTTGGAGCTTGTGACAACCAGGGTGTGGTCCATCTCGATCGTATTCGAGA
AGGATTTAGTCACCtcaatgaacataaatttaGACACGGTTTTCGTGACA
CCTTAGATCCTTTTGTGCGTGTAGGAcaaattccatcgaaaacacTCGAC
ACTTTCTTTTGCACTGCTCTATTTACTCTCAGGCAAGACATCTTTTGTTC
AACAAACTTCAGAACCTATATTGAGCttccaaaagcgcaaaaactggaca
aaacagctgtttctgtctgaaaaacactgtttttaagggttaatatctcg
aggtacagaaatcacctatatttgcaatatatctctaatcttaatttttt
gagagctttccaaaaatacacaacaggtctccgttttctcaagctaaaat
tttcattgatttctcaccctatgatttttgcctgagaccgtccgtcgtat
ttgtccgaaaatcacaccaaagtgtccgaaaaaaaattggcaaccaagtt
attttgattcccctaccccttagctttcaaaaaatgtataacaagtgctt
tgactaaaaaaatcgagcgatttaacaaatttccccctactactaGACAA
CCTTTCAACATAAACAACTCAATAATTAATCTTTCCATTGAATTTGTTCT
TGACTCTGAGAGGTTTAGTGGTGCCTTATCTTACTTTCTTATTTTAGTTC
GAACCCCCatccgtttatttggaacctaagaacAAGTGTAATGTAGTTTC
TCAGATTGtaattgtaaagaaaaaaatggacTTCTTTGAATTTCTGATTT
ATTCTTTTATAGGTGCAAGTTATATGGAAGAAGTTTGTTGGTCTTTGAAC
GTGTTGGCATTCCTGCCGTTAGCATTGCTTGGTTTGTCTATAAATACTGC
TTTGtgatgtttctttttatattaGTTTGTGAAAATAATATAATCATTTG
AAAAAACTGTTGAATTAGCGCTAAAAGGATATTTAATGTTACTTGGTTGG
tatgatttgaaagaaattaggCAACCACAAAGTGCCAATTGTACAAAAAT
GCTAAGTCTACTTCTACACTGGCGCCCTTTATTTGTAATAAGTGAAAGAA
ATTGTAcacccgtgtcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024637-exon-sc0000506-1491911889:172508..172573 | TCONS_00024637-exon-sc0000506-1491911889:172508..172573 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1510915933:172508..172573 | TCONS_00024637-exon-sc0000506-1510915933:172508..172573 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1575043694:172508..172573 | TCONS_00024637-exon-sc0000506-1575043694:172508..172573 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1491911889:173376..175097 | TCONS_00024637-exon-sc0000506-1491911889:173376..175097 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1510915933:173376..175097 | TCONS_00024637-exon-sc0000506-1510915933:173376..175097 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1575043694:173376..175097 | TCONS_00024637-exon-sc0000506-1575043694:173376..175097 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1491911889:177920..178225 | TCONS_00024637-exon-sc0000506-1491911889:177920..178225 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1510915933:177920..178225 | TCONS_00024637-exon-sc0000506-1510915933:177920..178225 | Clytia hemisphaerica | exon |
| TCONS_00024637-exon-sc0000506-1575043694:177920..178225 | TCONS_00024637-exon-sc0000506-1575043694:177920..178225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:172508..178225 + |
Blast
The following BLAST results are available for this feature:
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