TCONS_00024642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024642
Unique NameTCONS_00024642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024642 ID=TCONS_00024642|Name=TCONS_00024642|organism=Clytia hemisphaerica|type=transcript|length=1702bp
CCGTTACACAGTTTCTGCTTAATGACATCTCCACAtcaattttatggatt
ttaatTAATCAGGAGAGATACTGTAGGATGCGTTCTTGAGACATGCCACT
AGACCATGGTAATTTCGAAGATAAAAATGGGTGGGTTCTCTGTCAATTTA
CATCTAATTAAGTACAAGAATATTAGCTAATTCAACACCCTTTTCTCCCT
GAATAAAAGATATGTAGCCAAAGCGTAAGGAAACCTATCGAAGAAGTAAA
TTGTGCTAGCAAACATTGGCTAGGTCCTCAGTCAAAAATTGCaccccatt
tgatttgatttcataCTTTTCGACTTAACAATGTGGTTTAATAATGAAGA
GAGTTTGATCGAGTGTAAAAATTCCTGTATCCATATGAATTCAATAATAA
GTTTTTGTCAACCTTTTTCAGATTACCGTTCATGGATTTGGTTCAAATAT
ATTTACATCGGATGTGCGGACATCTGTTTCTGGTGGACAGTATGGAACAT
TGCAGATCATCTATGGCCTATGGACATCACTACAGACGGTGCTCTATCGT
ATGTCCGTGGTTACATGTTGATCATAGCTGCCAACCTCTACTACCTGCTC
CAACGATTACTGTTTCGCGAGACTTGTCATAAGTTTTATGAAACACGTGA
GAAACATTTACATCCAGCATGCATTGTAACAGAAGAAGAGGTCATCCGAA
ATAAACCGATTCGGTTTCAAGTTTTGAAGAAGGTGTTGACGTTAATGATA
TGGATGGTGGTTGTGGGGTTCATTCAAGTGTGGCGTGGATTGTTCGCCAC
TTTCGACTACGTTGTCGATTTGCTACACCTTCATTTCGATATCAACAAGA
TCTTGAGCTCTGTCATCTTTCAACTGATTGTAGGAATAACCCTGGCCTTC
ACACAAAGAAACAATGCAGTCAACTTGTGTCCAACACACAAGATTTATAA
GTATGACGAACTGGAGGAAATGGATGGCTTGTTCAGTCtccatgtttttg
aaaatttgttgttGAAAGACGATCAAAAAACTAGCAACACTCGAAATAGC
AAAATGGAGATTAAGGAAGCCCAAACATCAGTTCCTCCtcctccaccacc
accacccACGAAGAGTAGAAGGAAATTTTCTCCTTTAAATTCTGGTTTTG
ATCTTCCACAATACGCAGCACGTAAGATTTCCGGACAACTTCATCGTTCG
AGCAGCACCAACAGCCTGTATTCACAACGAAAAGCCTCACAGTCATCAAA
GAACTCGGACATGAGCTCAGTTGCGTCAACCGTATATCAGGACAGTACAC
CACCATCTTGTAAAACGTCAACCTCTAGTTTACAATCAACCGAGTCAACA
GAAGGGCGAAAAATGTCACGTGTTGAGTTAGACTTCAACGagaagaataa
aagaaaaatcagcaCTATGTCATTCTTGAACGCCCCCTCGTTTGAAATCA
TTGAAGAAGAGCAGCACGAAAACGAGGCCGGAAACTCGTTCCCAGACCAA
ACGATGATCGGCATCGACAATAAGAATTTCCTTAACACTGAAGTTGAAGA
TGAAATCCCGATGCACAAACTGAGTGAACAATCAAATACCCTTTTCATAG
ATCTTAAGGATATACAGGACAacaataaagaagaaaatgcTGACGTTGCA
GAAGCAGCCTGTGATATTTCATTGGACGTGATTGGAGGCTCGTCTACTGA
AG
Run BLAST on NCBI

transcript from alignment at sc0000506:181229..182930+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024642 ID=TCONS_00024642|Name=TCONS_00024642|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at sc0000506:181229..182930+ (Clytia hemisphaerica)
CCGTTACACAGTTTCTGCTTAATGACATCTCCACAtcaattttatggatt
ttaatTAATCAGGAGAGATACTGTAGGATGCGTTCTTGAGACATGCCACT
AGACCATGGTAATTTCGAAGATAAAAATGGGTGGGTTCTCTGTCAATTTA
CATCTAATTAAGTACAAGAATATTAGCTAATTCAACACCCTTTTCTCCCT
GAATAAAAGATATGTAGCCAAAGCGTAAGGAAACCTATCGAAGAAGTAAA
TTGTGCTAGCAAACATTGGCTAGGTCCTCAGTCAAAAATTGCaccccatt
tgatttgatttcataCTTTTCGACTTAACAATGTGGTTTAATAATGAAGA
GAGTTTGATCGAGTGTAAAAATTCCTGTATCCATATGAATTCAATAATAA
GTTTTTGTCAACCTTTTTCAGATTACCGTTCATGGATTTGGTTCAAATAT
ATTTACATCGGATGTGCGGACATCTGTTTCTGGTGGACAGTATGGAACAT
TGCAGATCATCTATGGCCTATGGACATCACTACAGACGGTGCTCTATCGT
ATGTCCGTGGTTACATGTTGATCATAGCTGCCAACCTCTACTACCTGCTC
CAACGATTACTGTTTCGCGAGACTTGTCATAAGTTTTATGAAACACGTGA
GAAACATTTACATCCAGCATGCATTGTAACAGAAGAAGAGGTCATCCGAA
ATAAACCGATTCGGTTTCAAGTTTTGAAGAAGGTGTTGACGTTAATGATA
TGGATGGTGGTTGTGGGGTTCATTCAAGTGTGGCGTGGATTGTTCGCCAC
TTTCGACTACGTTGTCGATTTGCTACACCTTCATTTCGATATCAACAAGA
TCTTGAGCTCTGTCATCTTTCAACTGATTGTAGGAATAACCCTGGCCTTC
ACACAAAGAAACAATGCAGTCAACTTGTGTCCAACACACAAGATTTATAA
GTATGACGAACTGGAGGAAATGGATGGCTTGTTCAGTCtccatgtttttg
aaaatttgttgttGAAAGACGATCAAAAAACTAGCAACACTCGAAATAGC
AAAATGGAGATTAAGGAAGCCCAAACATCAGTTCCTCCtcctccaccacc
accacccACGAAGAGTAGAAGGAAATTTTCTCCTTTAAATTCTGGTTTTG
ATCTTCCACAATACGCAGCACGTAAGATTTCCGGACAACTTCATCGTTCG
AGCAGCACCAACAGCCTGTATTCACAACGAAAAGCCTCACAGTCATCAAA
GAACTCGGACATGAGCTCAGTTGCGTCAACCGTATATCAGGACAGTACAC
CACCATCTTGTAAAACGTCAACCTCTAGTTTACAATCAACCGAGTCAACA
GAAGGGCGAAAAATGTCACGTGTTGAGTTAGACTTCAACGagaagaataa
aagaaaaatcagcaCTATGTCATTCTTGAACGCCCCCTCGTTTGAAATCA
TTGAAGAAGAGCAGCACGAAAACGAGGCCGGAAACTCGTTCCCAGACCAA
ACGATGATCGGCATCGACAATAAGAATTTCCTTAACACTGAAGTTGAAGA
TGAAATCCCGATGCACAAACTGAGTGAACAATCAAATACCCTTTTCATAG
ATCTTAAGGATATACAGGACAacaataaagaagaaaatgcTGACGTTGCA
GAAGCAGCCTGTGATATTTCATTGGACGTGATTGGAGGCTCGTCTACTGA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013835XLOC_013835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024642-exon-sc0000506-1491911889:181229..182930TCONS_00024642-exon-sc0000506-1491911889:181229..182930Clytia hemisphaericaexon
TCONS_00024642-exon-sc0000506-1510915933:181229..182930TCONS_00024642-exon-sc0000506-1510915933:181229..182930Clytia hemisphaericaexon
TCONS_00024642-exon-sc0000506-1575043694:181229..182930TCONS_00024642-exon-sc0000506-1575043694:181229..182930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:181229..182930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144013	0	0	0.0871734	0	0	0	0	0.332933	0.370218	0.183789	0.325044	0	0.353526	0	0	0	0	0	0.100961	0	0	0	0.106254	0.606433	0	0.188087	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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