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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024650 ID=TCONS_00024650|Name=TCONS_00024650|organism=Clytia hemisphaerica|type=transcript|length=2359bp
AAAATTTCGTAcagtttataagaaaaaaatttcataacacGTAAGAGTCA
TCACTTTTTCCGTTCACCCTCTGTATGTTTACATTGATCTTTCACTACTT
TTTAATGAGTCTTATTAATCATGTTCTTGTGACGTCACTTCACGTGATTC
GAACATGAGCACccatttcaaaaaagttctGCAAAATAACAAGGGAGATA
TAATACGTTccgaaaaataaactttgagAAAAAACAGAATGCTCGGAAGC
TTGGAAACTAGTTTTGaacgcataatttatgcaaaaaagACGTCATATTT
AATTTATGCACtcttaatttcaaaacaaaaacaatgttTATCCGCGGATT
AACTTACTAAGAAATAGTTCGAAGTAAGACTTATATTTCGATGAATAAAA
GTGTGCCACCAGTTTCGGAAAGATCATGTATAATGATTTCGTAAACATCA
AGAAGTAGGATATATCTGCACTGCAATTGGATTCAAGTCATAAGACAGAG
CAGCAGAAAGGCACTGAGAGATAATAATAAATACTTATTaaaagtttgaa
tttgaattaaaatCTTGTATAAGAtttaaagaaaacttaaaatggaTGAG
TTTTTAAACAAACACATTCAAGAAATCATTGCAAATGATAGCAAATCACA
ACTGAATTTTTCAACTGCATTGACTTTTGATAATTTGGATTGGTTTTCTC
CTGATGAGCTTTTCGATGGAAACCCAGAATCTGAGAATTCTCCAGTAAAT
GTGGAACAGGACTTCCACCATCAACAGAACATAAACACCAACAACTTATA
CCCTTCACCACAGCGCTTATATTCCTCCAGCTCATCTACAACATCATCAG
TTTATTCTGCAAGTGAAATCAGCGAGCGTTCACCACCANAAAATGGATGA
GTTTTTAAACAAACACATTCAAGAAATCATTGCAAATGATAGCAAATCAC
AACTGAATTTTTCAACTGCATTGACTTTTGATAATTTGGATTGGTTTTCT
CCTGATGAGCTTTTCGATGGAAACCCAGAATCTGAGAATTCTCCAGTAAA
TGTGGAACAGGACTTCCACCATCAACAGAACATAAACACCAACAACTTAT
ACCCTTCACCACAACGCTTATATTCCTCCAGCTCATCTACAACATCATCA
GTTTATTCTGCAAGTGAAATCAGCGAGCGTTCACCACCATCACCTCCATC
ACCAACTATTCCACCTTTGATTCAACACCAACCATCACCACCGCATCAAC
AACCTAAAATTAAATGCCCCACACCGCCACAACCCATGGAAGAAGAAGAT
ATCAAACCAAATCCAGAAGCTCTTAACTCAATGATTGATGTTGAATCTTT
TAAAACATTACAAAAACTTCATAATATTCCAACTGTTTCAAGTATTGAAG
AacttcaaaaatatcaaaaacttggTGTTCCTGCTTTACTACTATTTTAT
CCACAAAAAAACACAACAGATTCCACAACGAAAGAGGAGGataaaaacaa
attgaaaacgCCAGAAGATTTATTTAAGAACACTAAAAAAATCCCAGTAT
TGAACGTTTCTGGTGATGTTATCAAAATAGAACCAAAGTCACcaaaagaa
acaacaaaaacaaccaCCACAGCAAATGAAGACACTCGGGAAAGGATTCA
TGTATGTCCTTACCCAAATTGCGATAAAACCTATTTCAAGAACTCGCATC
TGAAAACTCACATCAGATCCCATACTGGAGAGAAACCATTCAAATGTGTT
TGGCCTGATTGCGACAGATCATTCGCACGCTCTGACGAACTTGCAAGACA
TAAACGATCACACACaggagaaagaaaatttgaatgcCCATTATGTTCAA
GGAAATTCATGCGATCGGACCATCTCACAAAACATGCAAAACGACACATG
CAAGCCAAGAAAATCCCTGGCTGGCAAAGAGAGATTAACAAGTTGAACGA
AATGGCTTCTGTTACATACCAATACCCCAGCATCATCTCTGAACAAACTA
TGTCCAGGAATAAAATGCAGATAGAATAATTTCCAAGAGACATTTAGAAA
GATgcattatttttataaatataaaaagaaaattttcatttattttggtt
tgtttttattctaacttttttaacaaatttgtcTACTTTCTTTGTAAACA
AATACTGTAAATATCTTTATAGAAATTGTAAATATCTTTGGTGTACTATA
TTTCAACGGAAGTGGactttatatataaaatttgacACAGGAAAAATTAC
ACATAAACAAACTCTTTATTTTTGTTCTGTCTTCATGACTCTTCTGattt
tctaaaagtttttgtttttcaactgtcgtccaaacatcaaaatttgtttt
cataatAAG Run BLAST on NCBI protein sequence of TCONS_00024650-protein >TCONS_00024650-protein ID=TCONS_00024650-protein|Name=TCONS_00024650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MDEFLNKHIQEIIANDSKSQLNFSTALTFDNLDWFSPDELFDGNPESENS
PVNVEQDFHHQQNINTNNLYPSPQRLYSSSSSTTSSVYSASEISERSPPS
PPSPTIPPLIQHQPSPPHQQPKIKCPTPPQPMEEEDIKPNPEALNSMIDV
ESFKTLQKLHNIPTVSSIEELQKYQKLGVPALLLFYPQKNTTDSTTKEED
KNKLKTPEDLFKNTKKIPVLNVSGDVIKIEPKSPKETTKTTTTANEDTRE
RIHVCPYPNCDKTYFKNSHLKTHIRSHTGEKPFKCVWPDCDRSFARSDEL
ARHKRSHTGERKFECPLCSRKFMRSDHLTKHAKRHMQAKKIPGWQREINK
LNEMASVTYQYPSIISEQTMSRNKMQIE Run BLAST on NCBI transcript from alignment at sc0000506:58836..61544- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024650 ID=TCONS_00024650|Name=TCONS_00024650|organism=Clytia hemisphaerica|type=transcript|length=2709bp|location=Sequence derived from alignment at sc0000506:58836..61544- (Clytia hemisphaerica)
AAAATTTCGTACAGTTTATAAGAAAAAAATTTCATAACACGTAAGAGTCA
TCACTTTTTCCGTTCACCCTCTGTATGTTTACATTGATCTTTCACTACTT
TTTAATGAGTCTTATTAATCATGTTCTTGTGACGTCACTTCACGTGATTC
GAACATGAGCACCCATTTCAAAAAAGTTCTGCAAAATAACAAGGGAGATA
TAATACGTTCCGAAAAATAAACTTTGAGAAAAAACAGAATGCTCGGAAGC
TTGGAAACTAGTTTTGAACGCATAATTTATGCAAAAAAGACGTCATATTT
AATTTATGCACTCTTAATTTCAAAACAAAAACAATGTTTATCCGCGGATT
AACTTACTAAGAAATAGTTCGAAGTAAGACTTATATTTCGATGAATAAAA
GTGTGCCACCAGTTTCGGAAAGATCATGTATAATGATTTCGTAAACATCA
AGAAGTAGGATATATCTGCACTGCAATTGGATTCAAGTCATAAGACAGAG
CAGCAGAAAGGCACTGAGAGATAATAATAAATACTTATTAAAAGTTTGAA
TTTGAATTAAAATCTTGTATAAGATTTAAAGAAAACTTAAAATGGATGAG
TTTTTAAACAAACACATTCAAGAAATCATTGCAAATGATAGCAAATCACA
ACTGAATTTTTCAACTGCATTGACTTTTGATAATTTGGATTGGTTTTCTC
CTGATGAGCTTTTCGATGGAAACCCAGAATCTGAGGTTGGTTTCAAAATC
CATTGTATGTAGCTAGATGATGACACTTGATTAATAGAAATTAATCTAAT
TCATATCCAAACTGATCTATAATCATCCTTTTTACTCCTTTATCTTTCAG
AATTCTCCAGTAAATGTGGAACAGGACTTCCACCATCAACAGAACATAAA
CACCAACAACTTATACCCTTCACCACAGCGCTTATATTCCTCCAGCTCAT
CTACAACATCATCAGTTTATTCTGCAAGTGAAATCAGCGAGCGTTCACCA
CCANAAAATGGATGAGTTTTTAAACAAACACATTCAAGAAATCATTGCAA
ATGATAGCAAATCACAACTGAATTTTTCAACTGCATTGACTTTTGATAAT
TTGGATTGGTTTTCTCCTGATGAGCTTTTCGATGGAAACCCAGAATCTGA
GGTTGGTTTCAAAATCCATTGTATATAGCTAGATAATGACACTTGATTAA
TAGAAATTAATCTAATTCATATCCAAACTGATCTATAATCTAAACTCCTT
TATCTTTCAGAATTCTCCAGTAAATGTGGAACAGGACTTCCACCATCAAC
AGAACATAAACACCAACAACTTATACCCTTCACCACAACGCTTATATTCC
TCCAGCTCATCTACAACATCATCAGTTTATTCTGCAAGTGAAATCAGCGA
GCGTTCACCACCATCACCTCCATCACCAACTATTCCACCTTTGATTCAAC
ACCAACCATCACCACCGCATCAACAACCTAAAATTAAATGCCCCACACCG
CCACAACCCATGGAAGAAGAAGATATCAAACCAAATCCAGAAGCTCTTAA
CTCAATGATTGATGTTGAATCTTTTAAAACATTACAAAAACTTCATAATA
TTCCAACTGTTTCAAGTATTGAAGAACTTCAAAAATATCAAAAACTTGGT
GTTCCTGCTTTACTACTATTTTATCCACAAAAAAACACAACAGATTCCAC
AACGAAAGAGGAGGATAAAAACAAATTGAAAACGCCAGAAGATTTATTTA
AGAACACTAAAAAAATCCCAGTATTGAACGTTTCTGGTGATGTTATCAAA
ATAGAACCAAAGTCACCAAAAGAAACAACAAAAACAACCACCACAGCAAA
TGAAGACACTCGGGAAAGGATTCATGTATGTCCTTACCCAAATTGCGATA
AAACCTATTTCAAGAACTCGCATCTGAAAACTCACATCAGATCCCATACT
GGTAAGCATCTCTTTATTTATTTTGGCATTCCTCTGCAAACATTTCAGTT
CTCTCATTTCACATATACAGTAGTTACAACCAAAATTATGTGGTATTAAT
TTTCTTTTTTCTTTTTTTGTTCTTCAGGAGAGAAACCATTCAAATGTGTT
TGGCCTGATTGCGACAGATCATTCGCACGCTCTGACGAACTTGCAAGACA
TAAACGATCACACACAGGAGAAAGAAAATTTGAATGCCCATTATGTTCAA
GGAAATTCATGCGATCGGACCATCTCACAAAACATGCAAAACGACACATG
CAAGCCAAGAAAATCCCTGGCTGGCAAAGAGAGATTAACAAGTTGAACGA
AATGGCTTCTGTTACATACCAATACCCCAGCATCATCTCTGAACAAACTA
TGTCCAGGAATAAAATGCAGATAGAATAATTTCCAAGAGACATTTAGAAA
GATGCATTATTTTTATAAATATAAAAAGAAAATTTTCATTTATTTTGGTT
TGTTTTTATTCTAACTTTTTTAACAAATTTGTCTACTTTCTTTGTAAACA
AATACTGTAAATATCTTTATAGAAATTGTAAATATCTTTGGTGTACTATA
TTTCAACGGAAGTGGACTTTATATATAAAATTTGACACAGGAAAAATTAC
ACATAAACAAACTCTTTATTTTTGTTCTGTCTTCATGACTCTTCTGATTT
TCTAAAAGTTTTTGTTTTTCAACTGTCGTCCAAACATCAAAATTTGTTTT
CATAATAAG Coding sequence (CDS) from alignment at sc0000506:58836..61544- >TCONS_00024650 ID=TCONS_00024650|Name=TCONS_00024650|organism=Clytia hemisphaerica|type=CDS|length=3411bp|location=Sequence derived from alignment at sc0000506:58836..61544- (Clytia hemisphaerica)
GAGAGAAACCATTCAAATGTGTTTGGCCTGATTGCGACAGATCATTCGCA
CGCTCTGACGAACTTGCAAGACATAAACGATCACACACAGGAGAAAGAAA
ATTTGAATGCCCATTATGTTCAAGGAAATTCATGCGATCGGACCATCTCA
CAAAACATGCAAAACGACACATGCAAGCCAAGAAAATCCCTGGCTGGCAA
AGAGAGATTAACAAGTTGAACGAAATGGCTTCTGTTACATACCAATACCC
CAGCATCATCTCTGAACAAACTATGTCCAGGAATAAAATGCAGATAGAAT
AAAATTCTCCAGTAAATGTGGAACAGGACTTCCACCATCAACAGAACATA
AACACCAACAACTTATACCCTTCACCACAACGCTTATATTCCTCCAGCTC
ATCTACAACATCATCAGTTTATTCTGCAAGTGAAATCAGCGAGCGTTCAC
CACCATCACCTCCATCACCAACTATTCCACCTTTGATTCAACACCAACCA
TCACCACCGCATCAACAACCTAAAATTAAATGCCCCACACCGCCACAACC
CATGGAAGAAGAAGATATCAAACCAAATCCAGAAGCTCTTAACTCAATGA
TTGATGTTGAATCTTTTAAAACATTACAAAAACTTCATAATATTCCAACT
GTTTCAAGTATTGAAGAACTTCAAAAATATCAAAAACTTGGTGTTCCTGC
TTTACTACTATTTTATCCACAAAAAAACACAACAGATTCCACAACGAAAG
AGGAGGATAAAAACAAATTGAAAACGCCAGAAGATTTATTTAAGAACACT
AAAAAAATCCCAGTATTGAACGTTTCTGGTGATGTTATCAAAATAGAACC
AAAGTCACCAAAAGAAACAACAAAAACAACCACCACAGCAAATGAAGACA
CTCGGGAAAGGATTCATGTATGTCCTTACCCAAATTGCGATAAAACCTAT
TTCAAGAACTCGCATCTGAAAACTCACATCAGATCCCATACTGATGGATG
AGTTTTTAAACAAACACATTCAAGAAATCATTGCAAATGATAGCAAATCA
CAACTGAATTTTTCAACTGCATTGACTTTTGATAATTTGGATTGGTTTTC
TCCTGATGAGCTTTTCGATGGAAACCCAGAATCTGAGGAGAGAAACCATT
CAAATGTGTTTGGCCTGATTGCGACAGATCATTCGCACGCTCTGACGAAC
TTGCAAGACATAAACGATCACACACAGGAGAAAGAAAATTTGAATGCCCA
TTATGTTCAAGGAAATTCATGCGATCGGACCATCTCACAAAACATGCAAA
ACGACACATGCAAGCCAAGAAAATCCCTGGCTGGCAAAGAGAGATTAACA
AGTTGAACGAAATGGCTTCTGTTACATACCAATACCCCAGCATCATCTCT
GAACAAACTATGTCCAGGAATAAAATGCAGATAGAATAAAATTCTCCAGT
AAATGTGGAACAGGACTTCCACCATCAACAGAACATAAACACCAACAACT
TATACCCTTCACCACAACGCTTATATTCCTCCAGCTCATCTACAACATCA
TCAGTTTATTCTGCAAGTGAAATCAGCGAGCGTTCACCACCATCACCTCC
ATCACCAACTATTCCACCTTTGATTCAACACCAACCATCACCACCGCATC
AACAACCTAAAATTAAATGCCCCACACCGCCACAACCCATGGAAGAAGAA
GATATCAAACCAAATCCAGAAGCTCTTAACTCAATGATTGATGTTGAATC
TTTTAAAACATTACAAAAACTTCATAATATTCCAACTGTTTCAAGTATTG
AAGAACTTCAAAAATATCAAAAACTTGGTGTTCCTGCTTTACTACTATTT
TATCCACAAAAAAACACAACAGATTCCACAACGAAAGAGGAGGATAAAAA
CAAATTGAAAACGCCAGAAGATTTATTTAAGAACACTAAAAAAATCCCAG
TATTGAACGTTTCTGGTGATGTTATCAAAATAGAACCAAAGTCACCAAAA
GAAACAACAAAAACAACCACCACAGCAAATGAAGACACTCGGGAAAGGAT
TCATGTATGTCCTTACCCAAATTGCGATAAAACCTATTTCAAGAACTCGC
ATCTGAAAACTCACATCAGATCCCATACTGATGGATGAGTTTTTAAACAA
ACACATTCAAGAAATCATTGCAAATGATAGCAAATCACAACTGAATTTTT
CAACTGCATTGACTTTTGATAATTTGGATTGGTTTTCTCCTGATGAGCTT
TTCGATGGAAACCCAGAATCTGAGGAGAGAAACCATTCAAATGTGTTTGG
CCTGATTGCGACAGATCATTCGCACGCTCTGACGAACTTGCAAGACATAA
ACGATCACACACAGGAGAAAGAAAATTTGAATGCCCATTATGTTCAAGGA
AATTCATGCGATCGGACCATCTCACAAAACATGCAAAACGACACATGCAA
GCCAAGAAAATCCCTGGCTGGCAAAGAGAGATTAACAAGTTGAACGAAAT
GGCTTCTGTTACATACCAATACCCCAGCATCATCTCTGAACAAACTATGT
CCAGGAATAAAATGCAGATAGAATAAAATTCTCCAGTAAATGTGGAACAG
GACTTCCACCATCAACAGAACATAAACACCAACAACTTATACCCTTCACC
ACAACGCTTATATTCCTCCAGCTCATCTACAACATCATCAGTTTATTCTG
CAAGTGAAATCAGCGAGCGTTCACCACCATCACCTCCATCACCAACTATT
CCACCTTTGATTCAACACCAACCATCACCACCGCATCAACAACCTAAAAT
TAAATGCCCCACACCGCCACAACCCATGGAAGAAGAAGATATCAAACCAA
ATCCAGAAGCTCTTAACTCAATGATTGATGTTGAATCTTTTAAAACATTA
CAAAAACTTCATAATATTCCAACTGTTTCAAGTATTGAAGAACTTCAAAA
ATATCAAAAACTTGGTGTTCCTGCTTTACTACTATTTTATCCACAAAAAA
ACACAACAGATTCCACAACGAAAGAGGAGGATAAAAACAAATTGAAAACG
CCAGAAGATTTATTTAAGAACACTAAAAAAATCCCAGTATTGAACGTTTC
TGGTGATGTTATCAAAATAGAACCAAAGTCACCAAAAGAAACAACAAAAA
CAACCACCACAGCAAATGAAGACACTCGGGAAAGGATTCATGTATGTCCT
TACCCAAATTGCGATAAAACCTATTTCAAGAACTCGCATCTGAAAACTCA
CATCAGATCCCATACTGATGGATGAGTTTTTAAACAAACACATTCAAGAA
ATCATTGCAAATGATAGCAAATCACAACTGAATTTTTCAACTGCATTGAC
TTTTGATAATTTGGATTGGTTTTCTCCTGATGAGCTTTTCGATGGAAACC
CAGAATCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024650-exon-sc0000506-1575043694:60810..61544 | TCONS_00024650-exon-sc0000506-1575043694:60810..61544 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1575043694:60394..60694 | TCONS_00024650-exon-sc0000506-1575043694:60394..60694 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1575043694:59594..60284 | TCONS_00024650-exon-sc0000506-1575043694:59594..60284 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1575043694:58836..59467 | TCONS_00024650-exon-sc0000506-1575043694:58836..59467 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1510915933:60810..61544 | TCONS_00024650-exon-sc0000506-1510915933:60810..61544 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1510915933:60394..60694 | TCONS_00024650-exon-sc0000506-1510915933:60394..60694 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1510915933:59594..60284 | TCONS_00024650-exon-sc0000506-1510915933:59594..60284 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1510915933:58836..59467 | TCONS_00024650-exon-sc0000506-1510915933:58836..59467 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1491911889:60810..61544 | TCONS_00024650-exon-sc0000506-1491911889:60810..61544 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1491911889:60394..60694 | TCONS_00024650-exon-sc0000506-1491911889:60394..60694 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1491911889:59594..60284 | TCONS_00024650-exon-sc0000506-1491911889:59594..60284 | Clytia hemisphaerica | exon |
| TCONS_00024650-exon-sc0000506-1491911889:58836..59467 | TCONS_00024650-exon-sc0000506-1491911889:58836..59467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:58836..61544 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00024650 vs. Swiss-Prot (Human)
Match: KLF11 (Krueppel-like factor 11 OS=Homo sapiens GN=KLF11 PE=1 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 2.004e-49 Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 2
Query: 1634 TRERIHVCPYPNCDKTYFKNSHLKTHIRSHTGEKPFKCVWPDCDRSFARSDELARHKRSHTGERKFECPLCSRKFMRSDHLTKHAKRHMQAKKIPGWQREINKLNEMASV 1963
+R R +VC +P C KTYFK+SHLK H+R+HTGEKPF C W CD+ FARSDEL+RH+R+HTGE+KF CP+C R+FMRSDHLTKHA+RHM KKIPGWQ E+ KLN +AS
Sbjct: 389 SRRRNYVCSFPGCRKTYFKSSHLKAHLRTHTGEKPFNCSWDGCDKKFARSDELSRHRRTHTGEKKFVCPVCDRRFMRSDHLTKHARRHMTTKKIPGWQAEVGKLNRIASA 498
The following BLAST results are available for this feature:
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