TCONS_00024672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024672
Unique NameTCONS_00024672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024672 ID=TCONS_00024672|Name=TCONS_00024672|organism=Clytia hemisphaerica|type=transcript|length=3623bp
AAATACCCAATTTGAGTGTTTCCAACAACTTCCAAGAGTTTCTTCTATAT
TGTGTAAATATATATTGtatattgaaaaaatagattttgttCTCTCTTAC
AGCTCAGAAACAAATTTAATGTTGCACAGATGAGGCATATTTTTGTATGT
TGTCGTTTTGAGGATGGATGTTGGTCGAAATAATGACTCATTTAATACGT
TCACTGAAAACCTTAACGAACTATGCTTGAAGACTCCAGAacagaaaaag
attttaaaaacagGCACCACACAGCCAAAGACAGCAAATAAAGTGACTTT
TGAGCCAGCCCCGGGAACTTTTAACATTACATTTGATACAAGTGATAGCG
AGAGTGATGAAGATCTAGACCTGAATGCTATTGTCAACCAAACAACATCA
CCAAAGTCTCCAGAAAAACCATTGGCAGGAGTAACTGTTTTCGTGGATGT
AAGAGCAGAAAATGAAAACAGATCCAAAGCTATTTCCAGAGAGCTAGAAA
GGCTAGGTGCCACAgtATCAGAAAAGATCAGCAGCAATATCACCCATGTG
GTTTTCAAAGATGGTCGAAAAGGGACTCTTTCTCAATTGAAGAAGTTTCC
TCATATCCACACTGTGTCAGTACTTTGGGTGGATGCTTGCAAGACCATTG
GATGCAAGGTGAACGAGGCTTTGTATCCTGCTCGTCACCCTGATGTGGAG
AACGACGGTGTTCTTCCAGCGAAGGTAAAAAGAGTCAAGTCGTTGCAACC
GAAAACTTTCGAAGAAGATGTCAATAACAGTGCAAaaaaagaagatagaa
aaagaaaaaggttgaaaaagttgaataaagACTATGGCACACCAACAGat
cAAGTAATATGTCTTGACAGCCAGGAATACATCAAAAGCTCAGATTTGCA
CAAGCTTGTGGCCACACCTTTAGCGATACCAGACACACCTTGGATAATCA
ATTACATCAATGGTACAGAAAACGAGAGTTCAAAAGTATCTCCAGATGCT
CTTTGCACCAAGCTTGGGTTTGATGACGCGAATAGTGAAAACCCAATGGA
TCAAGATGTTCAATGCAAATTAAACTTCGAGGATGCTTTGTTGAAACCGG
AGAAGCAAAATTCTTGCATGATTAGTATTGGAAGTTCACCTACAAAAAAG
TTTACTCCCTTGAAAAACAAGAATCTACCGAGGACGCCCAAAACTAGAAC
ACCCACTGCTACTATATCAAGGAAAGAACACGAACAGAATTCTACGAAAG
CTAGATCCACTCCTTCAACCTTTAANGGAACACTTGACGAAAACATGTAA
AGATTCAACGCCAGCTAGATCCACTCCTTCAACCTTTAAACAGACGggca
attatgaaaacaaagaaaatactaaaaacTCGACAAATCTTTCCAATTCT
GTACCAAAAATAACGAAATCCATTACTAGCACATCCAAAGAACGAAAGAA
ATCCCGCACGAAGTCTGCAAGTCGTGATCATAAAAAGACTGAAATCACTT
CTAATAAAAACGCAGAAACAGTCAACGGCTCTAGTAATGATAACCTTCAA
CACAAGAAAGACGAGTCTGACCGAGAAAGTGAACAAAGTCAAGCCGAAAA
CGATAATTGTGTCGACCAAGGCGAGGCTATGGAGATTGAAGCTTCAAGTC
CTTTGAAGCGAGTATCTCCAAATAAGGAAATGGCTGAAGAGACATTGGTT
GAGGGACagcgaaaaaagaaaaagaagaaactgaTGTCTAAAACACAATT
TTCGCTACCTCAAGAAAAGCTCATCAGTCCAGCACTTAAAGGTTCTTCGA
ATAAAGAGACGAAAGAGCCTGTAAAAACCAAGAAGAAACAACAAGCTTCA
TCAAGCAATCTCAACAGTCGACCTAATACTTTTACTGTGCTACAAAATTT
GGAGAATAGCAAGAAAACAACCTCACAGGAAACTGTTACTGTGATATCCT
CTTCGAAGCAATCACGGAATATTGACAATGCAGATATCTCAAAAGCGTAC
ACCTCTTTCATTGAAGACAATGTGCTACCCaacaaagtgaaagaaaaaat
aatttcgtcCAGTCCAGCTGCTTCTATCATACATGAAGAACCGAAAGTTG
AACGGCGTCGATCGAAACGTTTAACTGAGCTACGGCGCTCCTCTATTGAT
TTCAAAGTCACGAAGAAATTTCGTAAATTAAAGGCAGAAGCAGAGAAATC
TGTTCAACCAGCTCTCACAGAGGATCGCGTTCCTGAAGAATTTTCGTTGA
CCAATGACGAGCCAATGGATTTGAACCTTAGTTTTGTACACGATGAGAAC
GAAGGGCTGATCTGCACTTCACAAAATAGTGGAACCATCATACGTATCGA
TGATCTGCCGAGTGATGCCATACAAACCCCTGATAACGATGTCGAATGTG
AGATCCCACTTGGTGAAAAGAATGATGAGGAAGCACCGAGAGAAATGGAA
ACGACAACAGGAGAAATTGACTCGGGAATATCTGACAGTGAAGAAATAAA
CGATGATGAGGTGTTCCCACCACATAATGAGGAGCCTAAAATCACACAAC
CGCCACATGTTAAAAAATCTACGAAGAGATCAAATATCAGCTCGAAGAGT
AAATCGATAACGAGCGTGGTTTCTCCGAAGAAGAAAACATCGACAAGCAA
CCGTTCCATCAATACCACTTCCAACCGTTCCTTCAATACTACTTCCAATC
GATCCATTAATACTACCTCCAATCAATCTATTAACAGGACGCTGAATAGA
ACGTCTTCCTCCAAAAAGttCAAAAATTCAATCGTCTGCACAAGCCTCCA
TTTCAGTGAGCAAGATTTTGCGAAAGGGGCGATCAAAAACTTGAAAGAGT
ATCAGTTGAAGAAGAATGTGGCGCCAGACACAAGTCATGTCATTGCTGGT
AGCGGTCGGAGAACCTTGAATATCTTGCATGGAATCACTCAAGGGTGCTG
GATATTATCGCCTAAATGGatatcTGATTCTTACGAAGCTGGTTGTTGGT
TGGCTGAGGAAGATTACGAAATGCATAAAGATTTTCCTGCTGCTAAGGTG
TCACGCTTAAATCACCAGCGCTATGGTAAAAGCCACTGTGGTCGTTTATT
TGCGAAAGTACCGCGAATTTATTTGGCAGAAGTGACGAGCCCTCCTCACG
AAGAGCTCATGAAACTGATCATCTCCTGTGGTGGACAGCTAACGAACGCT
GTTCGAAAAGCTGGTCTTGCTATCGGTTTCATCAATTGTCGACGACATGA
AAGTCTTAAAATTATCTCTGAAAAATGGATTCTAGATACAATAACAAATG
GACGACTGATGGCTTTGGACAAGTACTTAATCACCATTCCTTACCAAAGA
GCAACAAGTCCTGATTATTAATGAACCGTGTATGTTTTTGTGTGTAAGTT
TATTCGTCTCAATATTTTATTGGACCCTggaaaatttgttttcttttgca
GACAGTCTGActgtcaaaattttatttctgatCAAAGATTTACATAGATT
AGGGCATCGAAATTATCTACACATTACGAAATCTTTAATCGGATTGGTGT
GTTTAAAATCTACTTTCCTTATCTTTTTTAATGATATTGAGGTCAGCTGA
TAGCCACCTTAAACTTGAGCGGG
Run BLAST on NCBI

transcript from alignment at sc0000506:190046..199002-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024672 ID=TCONS_00024672|Name=TCONS_00024672|organism=Clytia hemisphaerica|type=transcript|length=8957bp|location=Sequence derived from alignment at sc0000506:190046..199002- (Clytia hemisphaerica)
AAATACCCAATTTGAGTGTTTCCAACAACTTCCAAGAGTTTCTTCTATAT
TGTGTAAATATATATTGTATATTGAAAAAATAGATTTTGTTCTCTCTTAC
AGCTCAGAAACAAATTTAATGTTGCACAGATGAGGCATATTTTTGTATGT
TGTCGTTTTGAGGATGGATGTTGGTCGAAATAATGACTCATTTAATACGT
TCACTGAAAACCTTAACGAACTATGCTTGAAGACTCCAGAACAGAAAAAG
ATTTTAAAAACAGGCACCACACAGCCAAAGACAGCAAATAAAGTGACTTT
TGAGCCAGCCCCGGGAACTTTTAACATTACNGTCGAAATAATGATTCATT
TAATACGTTCACTGAAAACCTTAACGAACTATGCTTGAAGACTCAAGAAC
AGAAAAAGATTTTAAAAACAGGCACCACACAGCCAAAGACAGCAAATAAA
GTGACTTTTGAGCCAGCTTTAAACATTACATTTGATACAAGTGATAGCGA
GAGTGATGAAGATCTAGACCTGAATGCTATTGTCAACCAAACAACATCAC
CAAAGTCTCCAGAAAAACCATTGGCAGGTATATTGTTTATCTGATCAGAA
TTTGCTTTTAGATAAAAACAAAGTTCTTCAAGGTGAATGAGAAACAATAA
AGTTGTTTTGTCTTTGCAATAAAGTTGTCAATAATTTTAGAATATGAATA
ATTCCCTTTTATATTTAGGAGTAACTGTTTTCGTGGATGTAAGAGCAGAA
AATGAAAACAGATCCAAAGCTATTTCCAGAGAGCTAGAAAGGCTAGGTGC
CACAGTAAGTATTATAAGATTCTTTTATGATTTGTCTGGGAACTATTAAA
AACTTATTCTTTTTTGTATCTTTCATTTGAATGTGACTACGCTAACAAAG
TGCAAAAAATTTTTTAGGTATCAGAAAAGATCAGCAGCAATATCACCCAT
GTGGTAAGTTTTGCTTTATTCTGCTATTCAAAGTGTCATTATGAACTTAA
CTCTCATTATTCTCGTTAGAGATCATCGATAATTTATATTTTCCAATGTT
CAAAGTGTTCATTATTCTCTTTAGACATCATCAATAATTTTATGCTCCTT
GTATCAATATTTTCATATTTTCCAATCAGGTTTTCAAAGATGGTCGAAAA
GGGACTCTTTCTCAATTGAAGAAGTTTCCTCATATCCACACTGTGTCAGT
ACTTTGGGTGGATGCTTGCAAGACCATTGGATGCAAGGTGAACGAGGCTT
TGTATCCTGCTCGTCACCCTGATGTGGAGAACGACGGTGTTCTTCCAGCG
AAGGTAAAAAGAGTCAAGTCGTTGCAACCGAAAACTTTCGAAGAAGATGT
CAATAACAGTGCAAGTAAGCGTCTTGATATCACACAATGTTTATAATTTG
GGAGTGGAAGTTTCTTGATAATTGGTTTTTTTTTTGTATGCAGTAAGACT
CTTTGAAAAACACTGAATTAATATTTCCAAGAATGTATTATTGTGAGAAA
GCTCGAAATTCGTGATTCACTTTATTCACTGTTTATCTTTTCAGAAAAAG
AAGATAGAAAAAGAAAAAGGTTGAAAAAGTTGAATAAAGACTATGGCACA
CCAACAGGTACCGTTAAAAATCCACTCATCTTTTATTTTCCTTGAAGAAT
ACTATATCTTTTTACTCTTCTAGAATACCCTTGCACATGCTAAGTTGATG
AGATGAAGATATTTTAAATTAAATTGAAATTCGCTCTGCTTATTTGTTGT
TATTGAGCACTTTATTGACAAGTTGGTTTAATTCTTCATTACTAACTCTG
AAACATACAAAATTTTTCTTTTAGATCAAGTAATATGTCTTGACAGCCAG
GAATACATCAAAAGCTCAGTAAGTGTGTGCTCTTTTAATAAGCAATTCTT
ATTTTAACAAGAACCATTTTTGATATGCTCCACATTTAGAATTTCAAAAG
AAAGTCTTTAGTTCCGAGGAGTCAAATGAAAGAAGTAAAGTATGCAACTA
ATAATGATATGTTATTGTTTTAGGATTTGCACAAGCTTGTGGCCACACCT
TTAGCGATACCAGACACACCTTGGATAATCAATTACATCAATGGTACAGA
AAACGAGAGTTCAAAAGTATCTCCAGATGGTAAGCAGCGAACTTGGTTCA
TTTACAACCAGCATTTTTTGCTGATCCACTTTGTAAGAAAACCCAGTTGT
TTTCTGAAGAGCTTTTTATATTCTATATTATCCATAAAAAAATTCTAAGG
CGTTATTGTAGGTGAAAATACACAAAAATTTGAGCCTTTCTTAAAAGCAA
CACAACCTAGCCTTTATTCTTTTTGCAGCTCTTTGCACCAAGCTTGGGTT
TGATGACGCGAATAGTGAAAACCCAATGGATCAAGATGTTCAATGCAAAT
TAAACTTCGGTAAGAATTATTCTCTTTGTGTTATGTATGTCTTTATTGTC
TGTAAAATTGAATGTTTGTTTTAAAATGACTAACAAGAATTTTCAACTTG
CAAAAATAAAATAAATAAAATCATTATACAGAGCAATCTCTGGGAACACT
CATTGAATCAAATTTTTCTTTCGCCAACAGAGGATGCTTTGTTGAAACCG
GAGAAGCAAAATTCTTGCATGATTAGTATTGGAAGTTCACCTACAAAAAA
GTTTACTCCCTTGAAAAACAAGAATCTACCGAGGACGCCCAAAACTAGAA
CACCCACTGCTACTATATCAAGGAAAGAACACGAACAGAATTCTACGAAA
GCTAGATCCACTCCTTCAACCTTTAANGGAACACTTGACGAAAACATGTA
AAGATTCAACGCCAGCTAGATCCACTCCTTCAACCTTTAAACAGACGGGC
AATTATGAAAACAAAGAAAATACTAAAAACTCGACAAATCTTTCCAATTC
TGTACCAAAAATAACGAAATCCATTACTAGCACATCCAAAGAACGAAAGA
AATCCCGCACGAAGTCTGCAAGTCGTGATCATAAAAAGACTGAAATCACT
TCTAATAAAAACGCAGAAACAGTCAACGGCTCTAGTAATGATAACCTTCA
ACACAAGAAAGACGAGTCTGACCGAGAAAGTGAACAAAGTCAAGCCGAAA
ACGATAATTGTGTCGACCAAGGCGAGGCTATGGAGATTGAAGCTTCAAGT
CCTTTGAAGCGAGTATCTCCAAATAAGGAAATGGCTGAAGAGACATTGGT
TGAGGGACAGCGAAAAAAGAAAAAGAAGAAACTGATGTCTAAAACACAAT
TTTCGCTACCTCAAGAAAAGCTCATCAGTCCAGCACTTAAAGGTTCTTCG
AATAAAGGTATGTCAGATATCTCTCAATTTTAGCGTATTTAAGACTGGGT
TCTTTATCTGCATTAGACTCTCGTTCGATTTTCTCAGTTAAAATGTCCGT
CTTTGATTTGCTTAATATAATCTAAAGGAGTTTGTTTCCATTTCAGAGAC
GAAAGAGCCTGTAAAAACCAAGAAGAAACAACAAGCTTCATCAAGCAATC
TCAACAGTCGACCTAATACTTTTACTGTGCTACAAAATTTGGAGAATAGC
AAGAAAACAACCTCACAGGAAACTGTTACTGTGATATCCTCTTCGAAGCA
ATCACGGAATATTGACAATGCAGATATCTCAAAAGCGTACACCTCTTTCA
TTGAAGACAATGTGCTACCCAACAAAGTGAAAGAAAAAATAATTTCGTCC
AGTCCAGCTGCTTCTATCATACATGAAGAACCGAAAGTTGAACGGCGTCG
ATCGAAACGTTTAACTGAGCTACGGCGCTCCTCTATTGATTTCAAAGTCA
CGAAGAAATTTCGTAAATTAAAGGCAGAAGCAGAGAAATCTGTTCAACCA
GCTCTCACAGAGGATCGCGTTCCTGAAGAATTTTCGTTGACCAATGACGA
GCCAATGGATTTGAACCTTAGTTTTGTACACGATGAGAACGAAGGGCTGA
TCTGCACTTCACAAAATAGTGGAACCATCATACGTATCGATGATCTGCCG
AGTGATGCCATACAAACCCCTGATAACGATGTCGAATGTGAGATCCCACT
TGGTGAAAAGAATGATGAGGAAGCACCGAGAGAAATGGAAACGACAACAG
GAGAAATTGACTCGGGAATATCTGACAGTGAAGAAATAAACGATGATGAG
GTGTTCCCACCACATAATGAGGAGCCTAAAATCACACAACCGCCACATGT
TAAAAAATCTACGAAGAGATCAAATATCAGCTCGAAGAGTAAATCGATAA
CGAGCGTGGTTTCTCCGAAGAAGAAAACATCGACAAGCAACCGTTCCATC
AATACCACTTCCAACCGTTCCTTCAATACTACTTCCAATCGATCCATTAA
TACTACCTCCAATCAATCTATTAACAGGACGCTGAATAGAACGTCTTCCT
CCAAAAAGGTAATACTAACCTCGCTTTCTTTGAACTTTAGTGAAAATTCG
ATGACATTTATACTGTTGTTATTCTAAGATTTACTGCTGTGTTCGGGGAA
GATGAGCGAAAGAGTTCATCGATGGGCTTGTCAAGCCAATCACTAGTTAA
AACAGTACGAGTAAGGTAAACAGCGTGACTATTTTGTCACTCATCACGAA
TCACGCTTGAACATCTACATGATTCAAATGTAAATGTAGCACAAGCTGAC
ACCAGTATAACAAAAACGAACCTGGCATCAATATTTAAATTGAAATCGAC
GAGAAAACTCTTTTTCACAAGATTAATAATATCATTCGATAAAACATACA
AAAATTAGTTTACTTTAATTCCCCGTATAGACGGTATTATATTGAAAGGG
GCTGACTATTCTCTATTCATTTTAATTTTAGTTCAAAAATTCAATCGTCT
GCACAAGCCTCCATTTCAGGTAACGTTACGGTTTTCTTGCCATTTATTCT
AAATTTTTCAAGGTTTTTAAGATACGATAAAGAACCGCTTCGTCTCAAGA
ACTTTGAACGTTTACTTCTTGATGTTTTAGTGAGCAAGATTTTGCGAAAG
GGGCGATCAAAAACTTGAAAGAGTATCAGTTGAAGAAGAATGTGGCGCCA
GACACAAGTCATGTCATTGCTGGTAGCGGTCGGAGAACCTTGAATATCTT
GCATGGAATCACTCAAGGGTGCTGGATATTATCGCCTAAATGGGTATGTC
ATTATTTAATACATATTTAATTATTTCCATAACTCAAGTGATATTGAACA
TTGGACTGGTCTGACGTCATTTTATTGTGAGTACAAACTTGTACAATGTA
ATAAACAAACAAAGTGATCAAAATAATGCGTGCTTAGCTTGTACTACAAC
CCTTGCTCATTCAAAATTACGATTCGTTTTACATATATAGTCAATGAACC
GGCTGACTGAAATGTGCGTTCTTTCATTTTGTTACCATCAGTACTGATTT
TCCGATCAGCATGCGAAGTCTCAGAATACTGTAATGGGATAAACTTTCGC
GGGGATTAAATTTCGCGGATTTCGCGAAATTAAGTCCCAATGGAAATTTA
GAAGGGCCTCATCCGCGAAATATTTTTTAAACAAAACTTAAAATATGTCA
AATAAATAATATTTGAATGGTTACTTGCATCAACGAGGCGCTAATAATGT
GTACTTCAACAACCAACATGCAAGATTTGACAGTAAAAATCGCAAAATCG
TGAAAATAATGCCACCCAATAGTGCCGCCCGCGAAATTAAGTCCCCGCGA
AATTTTTGAATTTCGCGGATAAGCCCAACCGCGAAATTTAATCCCCGTGA
AAGTTTATCCCATTAAAGTAATTCATCAACCTCCACCCGTCAGTCATGTC
CCAAGGCACAAGTTTTGGGTTAATCATAATCTTTCTACCGATGACGAATT
TCGCCATGTATACTGGGCCACAATCGAGGGTGTACAATTTAAAAGACCTC
AATCTGTAAAAAGATTAAAGCATCACCTTAATTTTTCTAGATATCTGATT
CTTACGAAGCTGGTTGTTGGTTGGCTGAGGAAGATTACGAAATGCATAAA
GATTTTCCTGCTGCTAAGGTAGATGATCTCCCACATCGTTGAAAAGATAT
TTGAATGTATACAAGAAAAGTCATTGTCTGAAAGTATCACAGGGGGGGGG
TCAAGCAGTTAGTACAAGACATCATGCCGGTTAGTACCGTGGTGGTATAC
CTACAAAATTTTCAAAAATCAGTTAGTACTTGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGAATTTCGCGGATAAGCCCAACCGCGAAATTTAATCCCCG
TGAAAGTTTATCCCATTAAAGTAATTCATTAACCTCCACCCGTCCGTCAT
GTCCCAAGGCACAAGTTTTGGGTTAATCATAATCTTTCTACTGATGACGA
ATTTCACCATGTATACTGGGCCAAAATCGAGGGTGTACAGTTAAAAGACC
TCAATCTGTAAAAAGATTAAAGCATTACCTTAATTTTTTTAGATATCTGA
TTCTTACGAAGCTGGTTGTTGGTTGGCTGAGGAAGATTACGAAATGCATA
AAGATTTTCCTGCTGCTAAGGTAGATGGTCTCCCACATCGTTGGAATGAT
ATTTGAATGTATACAAGAAAAGTCATTGTCTGAAAGTATCACTTCTTGAA
ACATTTATATTCTTAATTTGGTCTCATTCTAATTCGTTTCTTAATATTTG
CAGGTGTCACGCTTAAATCACCAGCGCTATGGTAAAAGCCACTGTGGTCG
TTTATTTGCGAAAGTACCGCGAATTTATTTGGCAGAAGTGACGAGCCCTC
CTCACGAAGAGCTCATGAAACTGATCATCTCCTGTGGTGGACAGGTATGT
AGCACTAGACCAAGGCCAGCTTTAAAACCGAGGACTTGATTAGGTTGTTG
AAGCTTGTTGACTGAGATTTTGAAATAAAATGAAATATATCGAGGAGCGG
TTGGTCACGGTCTACACGTGCTATTCTATAATTTGGATAGTATCATTTTT
AAAGTTTATACAAAATACGAGGTTTGAAATGTGAATTCGTTGAACTATGA
GTAAAACTCTCCTTTTACAATAAAACATTTAGAATTTAATTTGGTTTAAT
CGAAACGAAACTGCATCCTTAGGATTTTCTAATCATAACGACCATGGAAC
CATATCTTTCCTTCCTCTCGTTTCAGCTAACGAACGCTGTTCGAAAAGCT
GGTCTTGCTATCGGTTTCATCAATTGTCGACGACATGAAAGTCTTAAAAT
TATCTCTGAAAAATGGATTCTAGGTAAACTGGCTGGTTTTTCATCCATTT
ATGATCAAAGCGTTTACCTTATCGGGGAAAACTTCATCGGGGAAAAGTGA
CGAAATTGCGGCCAAGTGACGAATATTTTTCCCCGACGAAAATTTTCCCC
GACGAAAATTTTTCCCGACGAAGTTTTCCCCGATAAGGTATTTATTTACA
TTGAAAGCGGAGAAAGATTTTCTCTCTTTTTGTATTTTCACGCGCCTCAA
AACCCATTACACTTGCAAAGACTTTAACTTAATTAAATGAACAGCTGAAG
GGGTCTTTCTATCAAGTTTGAACCTCTGTGCTACTTTAGTTTAATTTTCG
TTGGGATGAGATTTCACGGTTGAGCTCATCTGCGAATTTTTTAGATCTCG
CAAGGACTTATTTCGCGGATGTTACTTTTGGGAGGCAATATTTTCACGAT
TTTGTGGCTTTTACTGCCAAATCATACATGTTTGTTGTTCTCAACCTCAG
TTGAGCTAGAATCTGACAATGTCTGTATGTATGTCTGTATGTCCATCCAA
AAACTTTGGGGCAGCCTAGAGACTTCAAAAATTGTTCGATTTGACTGAAA
TTTTGCACACTTGTTGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCA
TTTTTCGAAAACTTTGATTTTTGGGGCCTGGAACGAGTTTTTCGCCAAAA
CGAGGCTAAAACTTGGGGCAGCCTGGAGACTTCAAAAATGAAAAATGAAG
ATAAAAACAACCCCAGGTATTCACCCAAGGAACAAGTGTACCAAATTTCA
GCCAAAACGGACAAAGTTATAATATTTGCTACCTAATACTAAGTATTTGA
AATGTTACAACTGGGCTTTCGAATAACAAAATATCTGAAGTTGAGCCCAG
TGCGGCGCGCACGTTCGACTATTTGAAATACGCATTATTAGCGTTTCCTT
GATGTCAGTAAACATTTAAAAAGAAGTTTATTTGACATTTGTGGGTTTGT
TTAAAAATATTTCGCGGATAAGGCCTTTTCAAATTTTCTGTGAGACCCTA
ATCCGCGAAATCTGCAAAATTTTATCCCATTAAAGTAAAAAATTTCCTTC
GCACTTCTTCCTACCTCAGATACAATAACAAATGGACGACTGATGGCTTT
GGACAAGTACTTAATCACCATTCCTTACCAAAGAGCAACAAGTCCTGATT
ATTAATGAACCGTGTATGTTTTTGTGTGTAAGTTTATTCGTCTCAATATT
TTATTGGACCCTGGAAAATTTGTTTTCTTTTGCAGACAGTCTGACTGTCA
AAATTTTATTTCTGATCAAAGATTTACATAGATTAGGGCATCGAAATTAT
CTACACATTACGAAATCTTTAATCGGATTGGTGTGTTTAAAATCTACTTT
CCTTATCTTTTTTAATGATATTGAGGTCAGCTGATAGCCACCTTAAACTT
GAGCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013845XLOC_013845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024672-exon-sc0000506-1575043694:198678..199002TCONS_00024672-exon-sc0000506-1575043694:198678..199002Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:198426..198528TCONS_00024672-exon-sc0000506-1575043694:198426..198528Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:198199..198284TCONS_00024672-exon-sc0000506-1575043694:198199..198284Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:198050..198085TCONS_00024672-exon-sc0000506-1575043694:198050..198085Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:197639..197873TCONS_00024672-exon-sc0000506-1575043694:197639..197873Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:197396..197458TCONS_00024672-exon-sc0000506-1575043694:197396..197458Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:197135..197178TCONS_00024672-exon-sc0000506-1575043694:197135..197178Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:196874..196979TCONS_00024672-exon-sc0000506-1575043694:196874..196979Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:196594..196674TCONS_00024672-exon-sc0000506-1575043694:196594..196674Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:195696..196422TCONS_00024672-exon-sc0000506-1575043694:195696..196422Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:194595..195556TCONS_00024672-exon-sc0000506-1575043694:194595..195556Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:194134..194171TCONS_00024672-exon-sc0000506-1575043694:194134..194171Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:193860..194022TCONS_00024672-exon-sc0000506-1575043694:193860..194022Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:192183..192260TCONS_00024672-exon-sc0000506-1575043694:192183..192260Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:191909..192049TCONS_00024672-exon-sc0000506-1575043694:191909..192049Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:191480..191576TCONS_00024672-exon-sc0000506-1575043694:191480..191576Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1575043694:190046..190383TCONS_00024672-exon-sc0000506-1575043694:190046..190383Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:198678..199002TCONS_00024672-exon-sc0000506-1510915933:198678..199002Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:198426..198528TCONS_00024672-exon-sc0000506-1510915933:198426..198528Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:198199..198284TCONS_00024672-exon-sc0000506-1510915933:198199..198284Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:198050..198085TCONS_00024672-exon-sc0000506-1510915933:198050..198085Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:197639..197873TCONS_00024672-exon-sc0000506-1510915933:197639..197873Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:197396..197458TCONS_00024672-exon-sc0000506-1510915933:197396..197458Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:197135..197178TCONS_00024672-exon-sc0000506-1510915933:197135..197178Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:196874..196979TCONS_00024672-exon-sc0000506-1510915933:196874..196979Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:196594..196674TCONS_00024672-exon-sc0000506-1510915933:196594..196674Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:195696..196422TCONS_00024672-exon-sc0000506-1510915933:195696..196422Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:194595..195556TCONS_00024672-exon-sc0000506-1510915933:194595..195556Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:194134..194171TCONS_00024672-exon-sc0000506-1510915933:194134..194171Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:193860..194022TCONS_00024672-exon-sc0000506-1510915933:193860..194022Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:192183..192260TCONS_00024672-exon-sc0000506-1510915933:192183..192260Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:191909..192049TCONS_00024672-exon-sc0000506-1510915933:191909..192049Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:191480..191576TCONS_00024672-exon-sc0000506-1510915933:191480..191576Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1510915933:190046..190383TCONS_00024672-exon-sc0000506-1510915933:190046..190383Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:198678..199002TCONS_00024672-exon-sc0000506-1491911889:198678..199002Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:198426..198528TCONS_00024672-exon-sc0000506-1491911889:198426..198528Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:198199..198284TCONS_00024672-exon-sc0000506-1491911889:198199..198284Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:198050..198085TCONS_00024672-exon-sc0000506-1491911889:198050..198085Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:197639..197873TCONS_00024672-exon-sc0000506-1491911889:197639..197873Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:197396..197458TCONS_00024672-exon-sc0000506-1491911889:197396..197458Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:197135..197178TCONS_00024672-exon-sc0000506-1491911889:197135..197178Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:196874..196979TCONS_00024672-exon-sc0000506-1491911889:196874..196979Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:196594..196674TCONS_00024672-exon-sc0000506-1491911889:196594..196674Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:195696..196422TCONS_00024672-exon-sc0000506-1491911889:195696..196422Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:194595..195556TCONS_00024672-exon-sc0000506-1491911889:194595..195556Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:194134..194171TCONS_00024672-exon-sc0000506-1491911889:194134..194171Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:193860..194022TCONS_00024672-exon-sc0000506-1491911889:193860..194022Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:192183..192260TCONS_00024672-exon-sc0000506-1491911889:192183..192260Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:191909..192049TCONS_00024672-exon-sc0000506-1491911889:191909..192049Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:191480..191576TCONS_00024672-exon-sc0000506-1491911889:191480..191576Clytia hemisphaericaexon
TCONS_00024672-exon-sc0000506-1491911889:190046..190383TCONS_00024672-exon-sc0000506-1491911889:190046..190383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:190046..199002 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40084e-10	0.000156901	5.87144e-06	1.72048e-05	1.6147e-10	0	0	0	1.0529e-10	9.54884e-09	4.75737e-07	4.65256e-10	0	0	1.00358e-08	3.58558e-09	3.37509e-08	0	2.30248e-07	0	0.00100145	0.00032069	0.000197363	2.92471e-07	0	0	3.83325e-05	0.00556941	1.56204e-09	6.15209e-05
Blast
[Close]
BLAST of TCONS_00024672 vs. Swiss-Prot (Human)
Match: MCPH1 (Microcephalin OS=Homo sapiens GN=MCPH1 PE=1 SV=4)

HSP 1 Score: 142.895 bits (359), Expect = 1.634e-34
Identity = 68/198 (34.34%), Postives = 118/198 (59.60%), Query Frame = 3 
Query: 2742 LNRTSSSKKFKNSIVCTSLHFSEQDFAKGAIKNLKEYQLKKNVAPDTSHVIAGSGRRTLNILHGITQGCWILSPKWISDSYEAGCWLAEEDYEMHKDFPAAKVSRLNHQRYGKSHCGRLFAKVPRIYLAEVTSPPHEELMKLIISCGGQLTNAVRKAGLAIGFINCRRHESLKIISEKWILDTITNGRLMALDKYLIT 3335
            L ++   KK   ++V TS+   +Q+     +  LK + +  +V   T+HV++G   RTLN+L GI +GCW+LS  W+  S E G W++EE +E+   FPAA + R         + G LFA  P ++++  +SPP  +L +L+  CGG+++   R+A + IG  + ++  ++K +SEKW+LD+IT  ++ A + YL++
Sbjct:  637 LKKSGRGKKPTRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPAMFVSPASSPPVAKLCELVHLCGGRVSQVPRQASIVIGPYSGKKKATVKYLSEKWVLDSITQHKVCAPENYLLS 834
The following BLAST results are available for this feature:
BLAST of TCONS_00024672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCPH11.634e-3434.34Microcephalin OS=Homo sapiens GN=MCPH1 PE=1 SV=4[more]
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