TCONS_00024678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024678
Unique NameTCONS_00024678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024678 ID=TCONS_00024678|Name=TCONS_00024678|organism=Clytia hemisphaerica|type=transcript|length=397bp
AATACACTCCAGCTTGAATCTGAGGGAaaagaagttaaaataaaaagttt
taacataaagtttactgaagattatgtaatttttccaaggtttgCTCTCA
AACAACACATAAATATCATCAGAAATTGAAACCTGAAATAAGCTACACCG
ATAAAGCTTCTAAGAATTAAGTTAAatatcaaaagcattttcagtTTAAT
GTAAACTACTTACATTATCTAGTTGATTTTTGTATAAGAGAACCAGCTTC
TTCCAGTTTTCGTGCATGAAACATCCAACTTTTACAGAACCTTTACTTTA
CTTTActgtttgatttttgttttgaactacaagtgatttcgaattcgaac
gttcgaaagctGTCCATAAAAGAAGCCATTCCATTGTTAATTCGGCG
Run BLAST on NCBI

transcript from alignment at sc0000506:61710..62106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024678 ID=TCONS_00024678|Name=TCONS_00024678|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0000506:61710..62106 (Clytia hemisphaerica)
CGCCGAATTAACAATGGAATGGCTTCTTTTATGGACagctttcgaacgtt
cgaattcgaaatcacttgtagttcaaaacaaaaatcaaacagTAAAGTAA
AGTAAAGGTTCTGTAAAAGTTGGATGTTTCATGCACGAAAACTGGAAGAA
GCTGGTTCTCTTATACAAAAATCAACTAGATAATGTAAGTAGTTTACATT
AAactgaaaatgcttttgatatTTAACTTAATTCTTAGAAGCTTTATCGG
TGTAGCTTATTTCAGGTTTCAATTTCTGATGATATTTATGTGTTGTTTGA
GAGcaaaccttggaaaaattacataatcttcagtaaactttatgttaaaa
ctttttattttaacttctttTCCCTCAGATTCAAGCTGGAGTGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013849XLOC_013849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024678-exon-sc0000506-1491911889:61710..62106TCONS_00024678-exon-sc0000506-1491911889:61710..62106Clytia hemisphaericaexon
TCONS_00024678-exon-sc0000506-1510915933:61710..62106TCONS_00024678-exon-sc0000506-1510915933:61710..62106Clytia hemisphaericaexon
TCONS_00024678-exon-sc0000506-1575043694:61710..62106TCONS_00024678-exon-sc0000506-1575043694:61710..62106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:61710..62106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754846	0.736093	0.641006	0.209041	2.0359	0	1.21309	0.908545	1.04583	2.48914	0	2.13657	0.714162	0.521357	0.535783	0.804968	0	0.145202	0.601813	0	1.01579	0.800965	1.02231	0.590143	3.24178	2.53156	0	0	0.316759	0.735529
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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