TCONS_00024682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024682
Unique NameTCONS_00024682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024682 ID=TCONS_00024682|Name=TCONS_00024682|organism=Clytia hemisphaerica|type=transcript|length=412bp
ctactaaaatcgaatccctcatgagcaaatgccaaattacaaatgccagt
tggtctaaacgcagccattgaagtgtgattaacgattaaatGCTCTCTAC
AGAATGCAATCAAcaattaattgctctctttgaaggggcgccaaatgaga
aaaaataagcTATAGTTCGATTATAAATAAAATGACGTATGCGATTAGAA
TGAGATGACTTTTTGCAGTCATTAGGTACGCGTGCGCATAACTTTAAATC
AATTCAAAGTAATTTATTCACCTGCATTAATAATAATTAAATACATTTAC
AAAGGTTTTCGACCAATACAATAAGGGGAATGCAGGCCAGGAGTCCATCC
AATAAACGTACCGTCAAATGGAATGAACACCTGGTCGCGTGAGCTGGTCA
TGTCGAATATCA
Run BLAST on NCBI

transcript from alignment at sc0000506:214624..215035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024682 ID=TCONS_00024682|Name=TCONS_00024682|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0000506:214624..215035 (Clytia hemisphaerica)
TGATATTCGACATGACCAGCTCACGCGACCAGGTGTTCATTCCATTTGAC
GGTACGTTTATTGGATGGACTCCTGGCCTGCATTCCCCTTATTGTATTGG
TCGAAAACCTTTGTAAATGTATTTAATTATTATTAATGCAGGTGAATAAA
TTACTTTGAATTGATTTAAAGTTATGCGCACGCGTACCTAATGACTGCAA
AAAGTCATCTCATTCTAATCGCATACGTCATTTTATTTATAATCGAACTA
TAgcttattttttctcatttggcgccccttcaaagagagcaattaattgT
TGATTGCATTCTGTAGAGAGCatttaatcgttaatcacacttcaatggct
gcgtttagaccaactggcatttgtaatttggcatttgctcatgagggatt
cgattttagtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013853XLOC_013853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024682-exon-sc0000506-1491911889:214624..215035TCONS_00024682-exon-sc0000506-1491911889:214624..215035Clytia hemisphaericaexon
TCONS_00024682-exon-sc0000506-1510915933:214624..215035TCONS_00024682-exon-sc0000506-1510915933:214624..215035Clytia hemisphaericaexon
TCONS_00024682-exon-sc0000506-1575043694:214624..215035TCONS_00024682-exon-sc0000506-1575043694:214624..215035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:214624..215035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.699307	0.170515	0.460508	0.193635	1.43756	1.2548	1.61565	1.79552	0.523824	1.3686	0.405986	1.6454	0.632999	1.94685	0.630177	0.451881	1.66563	0.423934	1.5804	2.00879	0.725956	1.89281	0.401966	0.182677	0	0.389202	1.00883	0	0.719076	1.30802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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