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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024690 ID=TCONS_00024690|Name=TCONS_00024690|organism=Clytia hemisphaerica|type=transcript|length=776bp
AAACGAAatatttaaagttaaaaatcaaaatgggtaATTCAACCTCAAAA
GTTGTTGTTGACAATTGCAATTATTTGATTGCCACTCTAAGTATTGACAT
TCATGTAAAAGAAGCATTACTGGAAAGTTGCCGTGATACAACGTTTGTTA
AAGTTCCTTTGCCTGCTGATGGTGTCGACctgttcaactttttcaatgat
CCTCAGAGGAAAAAGAAGCTAGACTCTTTGTTGAAACAAAAGTTTATTTA
TCAAGATCAATACGATTTACTCTTACCACAAAATTGTTTAACGGACTCTA
ATAATTGGGACGTGACTATCATAACTCGTGTTGCTGGGGAATTTCTTTTT
CTACCAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTAGAAA
CGGTGTTAAACACGGCAACCCGGAAGAGTTTAAACAGCAACAGAAATTTT
ATGACACGCTGGACGATATTGAAAAGCTGCTGATCAAACTAAACTATGCT
AAAATGAATGATTTTCATAACTTAAGAAACAAGACCGTACAGATTGATTT
GAAAACTATGATGAACTACCACAAGACGCTGATGACAAACATGCAAAATC
ACCTCATTAATGAACAAACTAAAGCAAGTAAAGACATTTTGAAACAAGTT
ATCGATTATTTCAACGTCAAAAGAGAACCCAGCCAAACCGTCCACCCAAG
CAAGATTCTCAGTTTCAGATCAAAGACAGAAAAAAGCAAGATCTACTCTT
ACTCGTAAGAAGAAGCCACAACCGGG Run BLAST on NCBI protein sequence of TCONS_00024690-protein >TCONS_00024690-protein ID=TCONS_00024690-protein|Name=TCONS_00024690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
TKYLKLKIKMGNSTSKVVVDNCNYLIATLSIDIHVKEALLESCRDTTFVK
VPLPADGVDLFNFFNDPQRKKKLDSLLKQKFIYQDQYDLLLPQNCLTDSN
NWDVTIITRVAGEFLFLPNSSKAIIKDAQKSRNGVKHGNPEEFKQQQKFY
DTLDDIEKLLIKLNYAKMNDFHNLRNKTVQIDLKTMMNYHKTLMTNMQNH
LINEQTKASKDILKQVIDYFNVKREPSQTVHPSKILSFRSKTEKSKIYSY
S Run BLAST on NCBI transcript from alignment at sc0000507:233894..236531+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024690 ID=TCONS_00024690|Name=TCONS_00024690|organism=Clytia hemisphaerica|type=transcript|length=2638bp|location=Sequence derived from alignment at sc0000507:233894..236531+ (Clytia hemisphaerica)
AAACGAAatatttaaagttaaaaatcaaaatgggtaATTCAACCTCAAAA
GTTGTTGTTGACAATTGCAATTATTTGATTGCCACTCTAAGTATTGACAT
TCATGTAAAAGAAGCATTACTGGAAAGTTGCCGTGATACAACGTTTGTTA
AAGTTCCTTTGCCTGCTGATGGTGTCGACctgttcaactttttcaatgat
CCTCAGAGGAAAAAGAAGCTAGACTCTTTGTTGAAACAAAAGTTTATTTA
TCAAGATCAATACGATTTACTCTTACCACAAAATTGTTTAACGGACTCTA
ATAATTGGGACGTGACTATCATAACTCGTGTTGCTGGGGAATTTCTTTTT
CTACCAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTAGAAA
CGGTGTTAAACACGGCAACCCGGAAGAGTTTAAACAGCAACAGAAATTTT
ATGACACGCTGGACGATATTGAAAAGCTGCTGATCAAACTAAACTATGCT
AAAATGAATGATTTTCATAACTTAAGAAACAAGACCGTACAGATTGATTT
GAAAACTATGATGAACTACCACAAGACGCTGATGACAAACATGCAAAATC
ACCTCATTAATGAACAAACTAAAGCAAGTAAAGACATTTTGAAACAAGTT
ATCGATTATTTCAACGTCAAAAGAGGTGAATATATTCTATTTTCTTCTAT
ATCTCTACTTTCTCTTCATTATACAGTGAAACTTACGCAGTTTTCGCAGA
TTTcactattttgtttgaatttttcgcggttggtcaattttgtaatattt
tgaaagtgatatcagaaaaattttttttgaatttccattCGATGATCTTT
TGAAACAGTAAAATTGTTAGTAAGGTAAAGTAAAATAAACATCTAACTTA
AATAGatcaattcaattttaaagcattttcttaaattcttagcgggaatt
aatttttcagttttgagCTCGAAAACGTTTTCGCGAGTTTAAAAAGCGAA
TATTAGTTCCTGCTAAAATTAGTTCTCTTTTAAGGTATATCCCTGTCTCT
TTATTTCAGATTTTTAGCTCTACCATGTTCTTAGAAGACATCCCTACTAT
CATCGGGTCttatatcaaaatttcttgaattttgtttCCTAGAAGATCTG
AATGTCAATAACATTTCATATGGAAAGATATCACAAATTAGTAAAGACTC
TTTACTTTCTTAATTTAGAACCCAGCCAAACCGTCCACCCAAGCAAGATT
CTCAGGTAGGTTTAACCTTATGTtgtttaaaaactcaaattggtaaattt
tcgcctgaaaatgaaaaggatTCTTTTCAACTAAGATTATCtaacatttt
ttaaaactaGAGTTTTTCAAGCCACTGTGTTCTGTTCACACTTTGACTTG
TTAGTAACAGTAAgaaaatctgaagaaaaaatatacGACATGTGTCgcca
aaaaaatggctttaaaaatCGAACACTAAAAGTGCAGCCCTTGAGAAGTG
CAAAGGTATTAAAgtgtattttaccgaacgtttctgaCCCATACAGTGTA
GTTTTATTTTATACCTTGTTGTGCTGCAGCCACCTAAAAATGAGCATGAG
ATGTTAAcacaatgttaaaaaaaaatctaaatggttgcgagtcaaaacta
taaagatacaacaaatttttacagTCAGATCTGCAATTCGCCGGTCCCCA
AACACACCTTTACAGTGTATTCTGATAAAAAAAACCCTTGTagtgaattc
tatcaaaagtattctcttacagtgcattttgagggtgtcgaaaaacctac
cctcaACTGCGGCACATGTCGTGATAACTAGGATAAAGCTTAgttctttc
tggttctttgaGTACTATAAATATCTGATTTCAAATTCACATTATAGGAa
gtcagaaaattattaaaacaaagaatcctttagaaaagaaagttgaaaga
aaaataaactcttTACTTCCTTATACAATTATTAAATTCTGGGGGTTACC
CTTGCATAGCGACGGAGATGTGCcgctcaaaattgaaaaatggacactac
gtgggactcgttttttgaaaaaaagttttctcgaaaattttcataacctc
ccaaaaaggtaccctatgGGGGatcgatttttatattttggtgtttttgc
gaccctacctgggattAATGTTTTTGTTATTCGATTTGTAAGGGTGAAAA
TCGCTTATATTGGTTAGGGTCAGTATCAGTTAGGGTAAGAGTTGACGCTC
AAGATTCAAAATAGGGTTGCGAGTAGCATTGGTAGAAAAATGTAAGGCCC
AAGCCTCAAGGCCCTAATAAGGGCATCCTTAGGGTTGGACCAACCTTGCT
ATGTTAATACTCATAGGTCTGTAAAATAAACATTGCAAGTAAATTTGCGA
ATTCGAATTTCTGCCGTGGCATCGTGGTTTGGTGTAGGCGTACGGAGCTT
CTAAACCAAGAGTACGTTTCACGAGTATGTTAGAAGCCCACCCGCAACTT
AACTATGGCAAATTACAGAATATCAAAACTGAATTATGAAAATGAAAAGA
GTCCAACTTAAAAACATCTTAAAGTTTCAGATCAAAGACAGAAAAAAGCA
AGATCTACTCTTACTCGTAAGAAGAAGCCACAACCGGG Coding sequence (CDS) from alignment at sc0000507:233894..236531+ >TCONS_00024690 ID=TCONS_00024690|Name=TCONS_00024690|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at sc0000507:233894..236531+ (Clytia hemisphaerica)
ACGAAatatttaaagttaaaaatcaaaatgggtaATTCAACCTCAAAAGT
TGTTGTTGACAATTGCAATTATTTGATTGCCACTCTAAGTATTGACATTC
ATGTAAAAGAAGCATTACTGGAAAGTTGCCGTGATACAACGTTTGTTAAA
GTTCCTTTGCCTGCTGATGGTGTCGACctgttcaactttttcaatgatCC
TCAGAGGAAAAAGAAGCTAGACTCTTTGTTGAAACAAAAGTTTATTTATC
AAGATCAATACGATTTACTCTTACCACAAAATTGTTTAACGGACTCTAAT
AATTGGGACGTGACTATCATAACTCGTGTTGCTGGGGAATTTCTTTTTCT
ACCAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTAGAAACG
GTGTTAAACACGGCAACCCGGAAGAGTTTAAACAGCAACAGAAATTTTAT
GACACGCTGGACGATATTGAAAAGCTGCTGATCAAACTAAACTATGCTAA
AATGAATGATTTTCATAACTTAAGAAACAAGACCGTACAGATTGATTTGA
AAACTATGATGAACTACCACAAGACGCTGATGACAAACATGCAAAATCAC
CTCATTAATGAACAAACTAAAGCAAGTAAAGACATTTTGAAACAAGTTAT
CGATTATTTCAACGTCAAAAGAGAACCCAGCCAAACCGTCCACCCAAGCA
AGATTCTCAGTTTCAGATCAAAGACAGAAAAAAGCAAGATCTACTCTTAC
TCGTAAACGAAatatttaaagttaaaaatcaaaatgggtaATTCAACCTC
AAAAGTTGTTGTTGACAATTGCAATTATTTGATTGCCACTCTAAGTATTG
ACATTCATGTAAAAGAAGCATTACTGGAAAGTTGCCGTGATACAACGTTT
GTTAAAGTTCCTTTGCCTGCTGATGGTGTCGACctgttcaactttttcaa
tgatCCTCAGAGGAAAAAGAAGCTAGACTCTTTGTTGAAACAAAAGTTTA
TTTATCAAGATCAATACGATTTACTCTTACCACAAAATTGTTTAACGGAC
TCTAATAATTGGGACGTGACTATCATAACTCGTGTTGCTGGGGAATTTCT
TTTTCTACCAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTA
GAAACGGTGTTAAACACGGCAACCCGGAAGAGTTTAAACAGCAACAGAAA
TTTTATGACACGCTGGACGATATTGAAAAGCTGCTGATCAAACTAAACTA
TGCTAAAATGAATGATTTTCATAACTTAAGAAACAAGACCGTACAGATTG
ATTTGAAAACTATGATGAACTACCACAAGACGCTGATGACAAACATGCAA
AATCACCTCATTAATGAACAAACTAAAGCAAGTAAAGACATTTTGAAACA
AGTTATCGATTATTTCAACGTCAAAAGAGAACCCAGCCAAACCGTCCACC
CAAGCAAGATTCTCAGTTTCAGATCAAAGACAGAAAAAAGCAAGATCTAC
TCTTACTCGTAAACGAAatatttaaagttaaaaatcaaaatgggtaATTC
AACCTCAAAAGTTGTTGTTGACAATTGCAATTATTTGATTGCCACTCTAA
GTATTGACATTCATGTAAAAGAAGCATTACTGGAAAGTTGCCGTGATACA
ACGTTTGTTAAAGTTCCTTTGCCTGCTGATGGTGTCGACctgttcaactt
tttcaatgatCCTCAGAGGAAAAAGAAGCTAGACTCTTTGTTGAAACAAA
AGTTTATTTATCAAGATCAATACGATTTACTCTTACCACAAAATTGTTTA
ACGGACTCTAATAATTGGGACGTGACTATCATAACTCGTGTTGCTGGGGA
ATTTCTTTTTCTACCAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGA
AGTCTAGAAACGGTGTTAAACACGGCAACCCGGAAGAGTTTAAACAGCAA
CAGAAATTTTATGACACGCTGGACGATATTGAAAAGCTGCTGATCAAACT
AAACTATGCTAAAATGAATGATTTTCATAACTTAAGAAACAAGACCGTAC
AGATTGATTTGAAAACTATGATGAACTACCACAAGACGCTGATGACAAAC
ATGCAAAATCACCTCATTAATGAACAAACTAAAGCAAGTAAAGACATTTT
GAAACAAGTTATCGATTATTTCAACGTCAAAAGAGAACCCAGCCAAACCG
TCCACCCAAGCAAGATTCTCAGTTTCAGATCAAAGACAGAAAAAAGCAAG
ATCTACTCTTACTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024690-exon-sc0000507-1491911889:233894..234568 | TCONS_00024690-exon-sc0000507-1491911889:233894..234568 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1510915933:233894..234568 | TCONS_00024690-exon-sc0000507-1510915933:233894..234568 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1575043694:233894..234568 | TCONS_00024690-exon-sc0000507-1575043694:233894..234568 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1491911889:235112..235148 | TCONS_00024690-exon-sc0000507-1491911889:235112..235148 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1510915933:235112..235148 | TCONS_00024690-exon-sc0000507-1510915933:235112..235148 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1575043694:235112..235148 | TCONS_00024690-exon-sc0000507-1575043694:235112..235148 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1491911889:236468..236531 | TCONS_00024690-exon-sc0000507-1491911889:236468..236531 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1510915933:236468..236531 | TCONS_00024690-exon-sc0000507-1510915933:236468..236531 | Clytia hemisphaerica | exon |
| TCONS_00024690-exon-sc0000507-1575043694:236468..236531 | TCONS_00024690-exon-sc0000507-1575043694:236468..236531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000507 | supercontig | sc0000507:233894..236531 + |
Blast
The following BLAST results are available for this feature:
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