TCONS_00024706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024706
Unique NameTCONS_00024706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024706 ID=TCONS_00024706|Name=TCONS_00024706|organism=Clytia hemisphaerica|type=transcript|length=586bp
GCGGAAAATTCAACAAGGTTCCATCTGATCAAGCAATCGAACAAACAATC
AACAGGGATCAGAAGTGTCATAGTGGTACCAAAGGATATAGCACTTCCCC
TGGAATGATTCAACGTTGGGTATTGACTAGCCACATTGCTTCGAAATGTA
TCAACGacattgaagattcttttggtAAAACGAAGAAACCAACAATTCCT
AAAGATCTAGGCAAATCTCGCCACACGTTCAATAACTGTACCGTTGAAAA
AGCCTACGAGGTTTTGAATTGCTGGGTTCCCCTTTTCAAAAGCGGGACGC
CCTCGTCAACGTATCTTCTGGGAACAAAGCATCTCCTTTGGTTGAACATG
ATTTGATCAAGGCTGTTGGAAAGGGTGAGACTGCGATGAAAAGTTTCATT
CGTGATCGCATCGAAACGTCACAGAATTGTTCTACGATTCGATGACCAAA
CTGAATCTCAAAACGTTTTCCTCTATGAAAACAAAGACAACGCGACACTT
GCTGCTGAAAGGTCGATGTTTGGTCGGCTTCTCGTCATCGCTAAATGTGA
GTCAGGAATATCCCTACTTCAGGTCCTCCAGTATTC
Run BLAST on NCBI

protein sequence of TCONS_00024706-protein

>TCONS_00024706-protein ID=TCONS_00024706-protein|Name=TCONS_00024706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
GKFNKVPSDQAIEQTINRDQKCHSGTKGYSTSPGMIQRWVLTSHIASKCI
NDIEDSFGKTKKPTIPKDLGKSRHTFNNCTVEKAYEVLNCWVPLFKSGTP
SSTYLLGTKHLLWLNMI
Run BLAST on NCBI

transcript from alignment at sc0000507:141829..142414

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024706 ID=TCONS_00024706|Name=TCONS_00024706|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000507:141829..142414 (Clytia hemisphaerica)
GAATACTGGAGGACCTGAAGTAGGGATATTCCTGACTCACATTTAGCGAT
GACGAGAAGCCGACCAAACATCGACCTTTCAGCAGCAAGTGTCGCGTTGT
CTTTGTTTTCATAGAGGAAAACGTTTTGAGATTCAGTTTGGTCATCGAAT
CGTAGAACAATTCTGTGACGTTTCGATGCGATCACGAATGAAACTTTTCA
TCGCAGTCTCACCCTTTCCAACAGCCTTGATCAAATCATGTTCAACCAAA
GGAGATGCTTTGTTCCCAGAAGATACGTTGACGAGGGCGTCCCGCTTTTG
AAAAGGGGAACCCAGCAATTCAAAACCTCGTAGGCTTTTTCAACGGTACA
GTTATTGAACGTGTGGCGAGATTTGCCTAGATCTTTAGGAATTGTTGGTT
TCTTCGTTTTaccaaaagaatcttcaatgtCGTTGATACATTTCGAAGCA
ATGTGGCTAGTCAATACCCAACGTTGAATCATTCCAGGGGAAGTGCTATA
TCCTTTGGTACCACTATGACACTTCTGATCCCTGTTGATTGTTTGTTCGA
TTGCTTGATCAGATGGAACCTTGTTGAATTTTCCGC

Coding sequence (CDS) from alignment at sc0000507:141829..142414

>TCONS_00024706 ID=TCONS_00024706|Name=TCONS_00024706|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000507:141829..142414 (Clytia hemisphaerica)
TCAAATCATGTTCAACCAAAGGAGATGCTTTGTTCCCAGAAGATACGTTG
ACGAGGGCGTCCCGCTTTTGAAAAGGGGAACCCAGCAATTCAAAACCTCG
TAGGCTTTTTCAACGGTACAGTTATTGAACGTGTGGCGAGATTTGCCTAG
ATCTTTAGGAATTGTTGGTTTCTTCGTTTTaccaaaagaatcttcaatgt
CGTTGATACATTTCGAAGCAATGTGGCTAGTCAATACCCAACGTTGAATC
ATTCCAGGGGAAGTGCTATATCCTTTGGTACCACTATGACACTTCTGATC
CCTGTTGATTGTTTGTTCGATTGCTTGATCAGATGGAACCTTGTTGAATT
TTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013874XLOC_013874Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024706-proteinTCONS_00024706-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024706-exon-sc0000507-1491911889:141829..142414TCONS_00024706-exon-sc0000507-1491911889:141829..142414Clytia hemisphaericaexon
TCONS_00024706-exon-sc0000507-1510915933:141829..142414TCONS_00024706-exon-sc0000507-1510915933:141829..142414Clytia hemisphaericaexon
TCONS_00024706-exon-sc0000507-1575043694:141829..142414TCONS_00024706-exon-sc0000507-1575043694:141829..142414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:141829..142414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.36707	0.106551	0.104243	0.253813	0.401133	0	0.566335	0.158602	0.294681	0.0953414	0.188021	0.0625866	0.389981	0.213745	1.1469	1.05967	1.37576	0.100036	0.523403	0.0909865	0.53256	0.107899	0.0980962	0.30311	0.270519	0.258074	0	0.313349	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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