TCONS_00024712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024712
Unique NameTCONS_00024712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024712 ID=TCONS_00024712|Name=TCONS_00024712|organism=Clytia hemisphaerica|type=transcript|length=357bp
AAAAATTGGTGCTTTAAAAAAACCCTGTGTTTTGCCGAGGTCATGGACCT
GTCTAAACCCTGGAAGAATAATGAGGTGGTTCAGTGACATGTAGTCCTGA
CAAAACTTCCAAATATTGGCTACTTGTTTTATAAAGtagagaaaatttta
gaattttgaggGGCTGAAAGTGCTATTTTGAGCTATCTTTAATGAATCTG
AATATCAGGACAGGGAAGAgacaatataaacaaaattcCCTAATGTTTCT
CTGAAAAACATGCCAAAATGATCCAAAACATGctaaaaaccatgaaaaat
gccaaatttgcaaaaatcatgaaaatcatgaaaaacatgcCGAGTGGGGT
CTCTGNC
Run BLAST on NCBI

transcript from alignment at sc0000507:221914..222270

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024712 ID=TCONS_00024712|Name=TCONS_00024712|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0000507:221914..222270 (Clytia hemisphaerica)
GNCAGAGACCCCACTCGgcatgtttttcatgattttcatgatttttgcaa
atttggcatttttcatggtttttagCATGTTTTGGATCATTTTGGCATGT
TTTTCAGAGAAACATTAGGgaattttgtttatattgtcTCTTCCCTGTCC
TGATATTCAGATTCATTAAAGATAGCTCAAAATAGCACTTTCAGCCcctc
aaaattctaaaattttctctaCTTTATAAAACAAGTAGCCAATATTTGGA
AGTTTTGTCAGGACTACATGTCACTGAACCACCTCATTATTCTTCCAGGG
TTTAGACAGGTCCATGACCTCGGCAAAACACAGGGTTTTTTTAAAGCACC
AATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013880XLOC_013880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024712-exon-sc0000507-1491911889:221914..222270TCONS_00024712-exon-sc0000507-1491911889:221914..222270Clytia hemisphaericaexon
TCONS_00024712-exon-sc0000507-1510915933:221914..222270TCONS_00024712-exon-sc0000507-1510915933:221914..222270Clytia hemisphaericaexon
TCONS_00024712-exon-sc0000507-1575043694:221914..222270TCONS_00024712-exon-sc0000507-1575043694:221914..222270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:221914..222270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52437	0.660956	4.32031	4.07748	9.30448	7.55769	8.57548	3.43122	4.81302	3.12343	6.32485	4.87296	3.10471	0.374829	0.97518	0.279368	1.8705	0.771702	2.16889	2.25667	3.85276e-06	3.11705	0.719705	1.78157	6.35323	6.80516	1.55281	6.6402	1.22448	1.24119
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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