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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024721 ID=TCONS_00024721|Name=TCONS_00024721|organism=Clytia hemisphaerica|type=transcript|length=1229bp
AAATTTTTCACTGATAAGTAGCATCTCACCTGAAGAATTCCTCGTCACGT
CActgattttaaagatttttgctaaatgaatttctatttttttcagagaa
ataaataaaaagttaaaaaaatgtcaCGAAAACTTGCACTTGAAAGTCTG
CAATTATCTTTGGGTTTGGATGGAGACATgaaacaaaaaacgaaaaatga
aaagaacaatagaaagaaGAACAAATCACTAAAGAAGAACACAAGCATCG
TTAAGAAGCAAATTTCATTGAACAAGAAGAAACAATTGGAGAAAAATGTG
AAGAATTACCAACAATCGCTAGCCATTCCCAAAAATAAACGCTCTGTTGA
TCAAAGAAAGttattGGATTTGTTGATGGGTGGTGACACCAAACGAAAAC
AAAACGCCTCCAACGGCGAGATGGATGATGACATGGATTTCACCAAGTCT
ATCCTctttgatgatgacgtcatcggtaaAAATACCGGCGCCGACAATGA
AGAGGAGGAAGAAGGGGCAGCTTTTGGGGAATGGAATAAACAAAGTCGGA
AGAAAGAGAAGACCATTTTTGTTCGCACGAAGTGAGAAACAGGGAAGATG
ATTTGGTCGCTTGTGAAAGTGTAAGCACATCTTTCACAACGTTTCAAATG
TAATAAAATGATGATACATGTTGGATGAATGTCAGTTCCATTGCAGAAGT
CTGAATCGTTATTTCATACCTCTAGAAATCGTTTCAAGAGATTTAATTAA
CACTCAAAGACAATGTCAAAATACTTACGtcgaaatggaaaattttcgca
GGAAGACGCTGGTTTTCTTGAGTAGTAGTACTTCCTTTCATATTTAGTTT
TTTCAGCCTTCATTTATACACCTCTGTCTCAGTGCCCGATACAATTCAGC
CTCAGCTCAAAAATGTCAGTGGGGTGggtttgaagtgcaatttttccaTT
ATTTGCCAACTGGGATAAAATCACTGAGGTTGGAATTTCTGGATATTTTT
CCACTGGCAACGATTTTCTGTTAATTTTTTGATGGAGAATGGGTGGGACC
CGACCGGATCTGTGACCAAGATGTTACCATAGAAAGATGGAGAATGAAAG
ACGAAACGAAAATTGTATGAGGTAGAAATGAAGGGCATAATATTTTTTTA
GTAACTTGAttattactttaatgggataaattttcgcggggattaaattt
cgcggttgagctcatccgcgaaattttaa Run BLAST on NCBI protein sequence of TCONS_00024721-protein >TCONS_00024721-protein ID=TCONS_00024721-protein|Name=TCONS_00024721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MSRKLALESLQLSLGLDGDMKQKTKNEKNNRKKNKSLKKNTSIVKKQISL
NKKKQLEKNVKNYQQSLAIPKNKRSVDQRKLLDLLMGGDTKRKQNASNGE
MDDDMDFTKSILFDDDVIGKNTGADNEEEEEGAAFGEWNKQSRKKEKTIF
VRTK Run BLAST on NCBI transcript from alignment at sc0000509:99580..102081+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024721 ID=TCONS_00024721|Name=TCONS_00024721|organism=Clytia hemisphaerica|type=transcript|length=2502bp|location=Sequence derived from alignment at sc0000509:99580..102081+ (Clytia hemisphaerica)
AAATTTTTCACTGATAAGTAGCATCTCACCTGAAGAATTCCTCGTCACGT
CActgattttaaagatttttgctaaatgaatttctatttttttcagagaa
ataaataaaaagttaaaaaaatgtcaCGAAAACTTGCACTTGAAAGTCTG
CAATTATCTTTGGGTTTGGATGGAGACATgaaacaaaaaacgaaaaatga
aaagaacaatagaaagaaGAACAAATCACTAAAGAAGAACACAAGCATCG
TTAAGAAGCAAATTTCATGTAAGACTTACTTCGCCCGATCACTATGTAAA
ACCTGCCTGTTTTTTATTGCCCCCGGACAATATTAGAATCTCCTATTTAT
CTTTCAAATATCAAAGgtttgagtgatatcatttgtttactcttcaattt
taatttacaagctttttcacattgaattgacacggacgCGGATttgattg
gtcagaaagaggaaaagaaaataatttaacaaaataacaatagggagaca
ccgtcctgatatgaaatatgtgtctgatatgaaacgagaaCACTTGTGta
gaaataaaacctttaaagcgaAAGAGCCATATTTTTTACCGATCTCAACC
TTCATTTATCTTTCATTTCCTGGTTTATTTTTAAGACACTCGCCTACACT
TAACCCCTGAATTGCTCGATTTCCCAACTTTTCTTTGTTTAATTTGAACA
GTGAACAAGAAGAAACAATTGGAGAAAAATGTGAAGAATTACCAACAATC
GCTAGCCATTCCCAAAAATAAACGCTCTGTTGATCAAAGAAAGGTAGACA
CTTCTTGTGTGAACATTGCTTCCCTTCCCTGGTTTTAAATCCCATATTTT
TGTGGATAATCCTGACACTGAGGATCAGAACAATCCAAATTTTTGATTAA
ATTACAGTGAATTAGAATTCTTGTCGAACTATTATTTGAAGTAAAcattt
gagtatttttgtatcATTCTAAGTTATTCCGCCCCTGGGTGCCATGCATG
TGTCAATGAACGCATATGAAattattccccccccccctgggagcCATGCA
TGTGCCAATGAACTCTATGAAGTTATTCCGCTCCCGTGCCATGTGTTTGT
AAATGAACTCGTATGAAGTTATCCCCCCGCCCCCTGGGTGCCATGTGTGT
GCCAATTAACTCGATGAAGTTATCCCGCCCCCTGGGTGCAATGTGTGTgc
caatgaaaatttttattgggTACCAACAAGTGAAACGAAATTAGGTTTGA
AATAGTCATGGAAAACAGGGATATTCTATTTGCCTAATACTTATACGAAA
AGCTTGAACCATCTTACATCTACATGGTTGAATCACAACTAATGACTAAT
GACTACTGTGCATTTCAAACTCCTTGAGACAACGTTGAAATGCACTACTT
TCTCATTCATCATCTTCCAAGGCGAACATTGATGAGGTTTCGGTAGCATC
CACCAGGGGTTTGAACCTGTATTGTCACTGAACATGGTATTGCACAAATA
GCCAACTGAGATATCCAAGCTGCTTGAATATAGTTACCTTTTATTGCAGT
TTTAGTAACAGTTAGCTAGAGCAAAATTGTTATCTTTCATACTCAAATGT
CGCAGTCACCAAAAActtactttcttttttcagttattGGATTTGTTGAT
GGGTGGTGACACCAAACGAAAACAAAACGCCTCCAACGGCGAGATGGATG
ATGACATGGATTTCACCAAGTCTATCCTctttgatgatgacgtcatcggt
aaAAATACCGGCGCCGACAATGAAGAGGAGGAAGAAGGGGCAGCTTTTGG
GGAATGGAATAAACAAAGTCGGAAGAAAGAGAAGACCATTTTTGTTCGCA
CGAAGTGAGAAACAGGGAAGATGATTTGGTCGCTTGTGAAAGTGTAAGCA
CATCTTTCACAACGTTTCAAATGTAATAAAATGATGATACATGTTGGATG
AATGTCAGTTCCATTGCAGAAGTCTGAATCGTTATTTCATACCTCTAGAA
ATCGTTTCAAGAGATTTAATTAACACTCAAAGACAATGTCAAAATACTTA
CGtcgaaatggaaaattttcgcaGGAAGACGCTGGTTTTCTTGAGTAGTA
GTACTTCCTTTCATATTTAGTTTTTTCAGCCTTCATTTATACACCTCTGT
CTCAGTGCCCGATACAATTCAGCCTCAGCTCAAAAATGTCAGTGGGGTGg
gtttgaagtgcaatttttccaTTATTTGCCAACTGGGATAAAATCACTGA
GGTTGGAATTTCTGGATATTTTTCCACTGGCAACGATTTTCTGTTAATTT
TTTGATGGAGAATGGGTGGGACCCGACCGGATCTGTGACCAAGATGTTAC
CATAGAAAGATGGAGAATGAAAGACGAAACGAAAATTGTATGAGGTAGAA
ATGAAGGGCATAATATTTTTTTAGTAACTTGAttattactttaatgggat
aaattttcgcggggattaaatttcgcggttgagctcatccgcgaaatttt
aa Coding sequence (CDS) from alignment at sc0000509:99580..102081+ >TCONS_00024721 ID=TCONS_00024721|Name=TCONS_00024721|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0000509:99580..102081+ (Clytia hemisphaerica)
atgtcaCGAAAACTTGCACTTGAAAGTCTGCAATTATCTTTGGGTTTGGA
TGGAGACATgaaacaaaaaacgaaaaatgaaaagaacaatagaaagaaGA
ACAAATCACTAAAGAAGAACACAAGCATCGTTAAGAAGCAAATTTCATTG
AACAAGAAGAAACAATTGGAGAAAAATGTGAAGAATTACCAACAATCGCT
AGCCATTCCCAAAAATAAACGCTCTGTTGATCAAAGAAAGttattGGATT
TGTTGATGGGTGGTGACACCAAACGAAAACAAAACGCCTCCAACGGCGAG
ATGGATGATGACATGGATTTCACCAAGTCTATCCTctttgatgatgacgt
catcggtaaAAATACCGGCGCCGACAATGAAGAGGAGGAAGAAGGGGCAG
CTTTTGGGGAATGGAATAAACAAAGTCGGAAGAAAGAGAAGACCATTTTT
GTTCGCACGAAGTGAatgtcaCGAAAACTTGCACTTGAAAGTCTGCAATT
ATCTTTGGGTTTGGATGGAGACATgaaacaaaaaacgaaaaatgaaaaga
acaatagaaagaaGAACAAATCACTAAAGAAGAACACAAGCATCGTTAAG
AAGCAAATTTCATTGAACAAGAAGAAACAATTGGAGAAAAATGTGAAGAA
TTACCAACAATCGCTAGCCATTCCCAAAAATAAACGCTCTGTTGATCAAA
GAAAGttattGGATTTGTTGATGGGTGGTGACACCAAACGAAAACAAAAC
GCCTCCAACGGCGAGATGGATGATGACATGGATTTCACCAAGTCTATCCT
ctttgatgatgacgtcatcggtaaAAATACCGGCGCCGACAATGAAGAGG
AGGAAGAAGGGGCAGCTTTTGGGGAATGGAATAAACAAAGTCGGAAGAAA
GAGAAGACCATTTTTGTTCGCACGAAGTGAatgtcaCGAAAACTTGCACT
TGAAAGTCTGCAATTATCTTTGGGTTTGGATGGAGACATgaaacaaaaaa
cgaaaaatgaaaagaacaatagaaagaaGAACAAATCACTAAAGAAGAAC
ACAAGCATCGTTAAGAAGCAAATTTCATTGAACAAGAAGAAACAATTGGA
GAAAAATGTGAAGAATTACCAACAATCGCTAGCCATTCCCAAAAATAAAC
GCTCTGTTGATCAAAGAAAGttattGGATTTGTTGATGGGTGGTGACACC
AAACGAAAACAAAACGCCTCCAACGGCGAGATGGATGATGACATGGATTT
CACCAAGTCTATCCTctttgatgatgacgtcatcggtaaAAATACCGGCG
CCGACAATGAAGAGGAGGAAGAAGGGGCAGCTTTTGGGGAATGGAATAAA
CAAAGTCGGAAGAAAGAGAAGACCATTTTTGTTCGCACGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024721-exon-sc0000509-1491911889:99580..99847 | TCONS_00024721-exon-sc0000509-1491911889:99580..99847 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1510915933:99580..99847 | TCONS_00024721-exon-sc0000509-1510915933:99580..99847 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1575043694:99580..99847 | TCONS_00024721-exon-sc0000509-1575043694:99580..99847 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1491911889:100281..100372 | TCONS_00024721-exon-sc0000509-1491911889:100281..100372 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1510915933:100281..100372 | TCONS_00024721-exon-sc0000509-1510915933:100281..100372 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1575043694:100281..100372 | TCONS_00024721-exon-sc0000509-1575043694:100281..100372 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1491911889:101213..102081 | TCONS_00024721-exon-sc0000509-1491911889:101213..102081 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1510915933:101213..102081 | TCONS_00024721-exon-sc0000509-1510915933:101213..102081 | Clytia hemisphaerica | exon |
| TCONS_00024721-exon-sc0000509-1575043694:101213..102081 | TCONS_00024721-exon-sc0000509-1575043694:101213..102081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000509 | supercontig | sc0000509:99580..102081 + |
Blast
The following BLAST results are available for this feature:
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