TCONS_00024737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024737
Unique NameTCONS_00024737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024737 ID=TCONS_00024737|Name=TCONS_00024737|organism=Clytia hemisphaerica|type=transcript|length=277bp
TATAGATGGTGAATCATTATTTTCTGCATTGTCAGCATCAGAGGATAGTC
AAGACAGTCAAGGTTTGGCAGGAAGACATGTTAACTGTGCTGCTGATATC
TATTCTTTTGGAATTGTTGCTTTGGAGATGGCAACATTACAATGGGCAGA
AACTTCAACTTCTGTCACACCTGAAATGATTGAGAATGCTATCGACAGTC
TGGAAGATCCTTTACAACGGGATTTCATTCATAAATGTCTACAGAATAAT
CCGGCTGACAGGCCGACCGTGCGAAGT
Run BLAST on NCBI

transcript from alignment at sc0000509:278786..280207+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024737 ID=TCONS_00024737|Name=TCONS_00024737|organism=Clytia hemisphaerica|type=transcript|length=1422bp|location=Sequence derived from alignment at sc0000509:278786..280207+ (Clytia hemisphaerica)
TATAGATGGTGAATCATTATTTTCTGCATTGTCAGCATCAGAGGATAGTC
AAGACAGTCAAGGTAATTTAAAAAGCTTGTCTTGCTTTACTTGCAATGGT
GGAAGCAACATAAAGAGCTTTCTTGCATCAATTTGATAGTCCTTTAGGAG
ATCGCACTATCATTTTCATGGTTGTGACGGAATTTCTCTAAAGTAAacta
caaaagaaaaaaaaactgctGGAGTAACCGTCAGTAAAAATGGAATTGCA
ATCTCCTAAAGGACCATTACTTCATGTTACAGTAGCATCAAGTGTGAGAT
TTTTTCCTAACAAACTTCTGTCACTTTTTATTGTCTTGTAGGTTTGGCAG
GAAGACATGTTAACTGTGCTGCTGATATCTATTCTTTTGGAATTGTTGCT
TTGGAGGTTTGTCAAACAATTTTGATATAATTTGTTTTAGTCTTTAAATG
TTTCTGTTCGACGTGGGAATTAGCTGGGAGCATCTGTTCAATTTCGTCAA
AATAAGGAAAGATCGATCGTCGACCGTCTAAAATAGAGTTTTGCACACGA
TAATATGGTATTGTGTTTCTGAACTCTAGAATTAGAATCTAGAATTACAA
CGAATAGAACTTGGCAAAATTGAATTCAAGATGTTAAACTTTTTCGTGGT
GCACCCGGTACATGTTTTAACTTCAACGGAAATCTTTCTGAATTCATGTC
AGATGCAGCAAAAACAATAGCAGGTTAACATTgttatttaatgaaaatta
atttcctTCCTCAGATGGCAACATTACAATGGGCAGAAACTTCAACTTCT
GTCACACCTGAAATGATTGAGAATGCTATCGACAGTCTGGAAGATCCTTT
ACAACGGGTATGAACTTCATGTAACACAACAATTTGTTGGTTTACCTGAa
aaccaacctcgtccccgtgtatcccaggctttatttacgttactgattga
cccCAGagaattatctagcgctatcagtaagcgtcaaaaagctgataata
cgcaggaaACGAGGTTGTCTGAAAACAACAATTTAAGAAGACGAGTTTGA
TTGATCATCATGAGCTCTCTCTGCATAAAAATCTTCGAATTAAGTGTATT
TACCCTCGTGCCCTTAagcattttaaaaaaatatgtcaATACGTCAATCT
GGAAATTGTCCAATTCCTTCAGTATGCAAGAAATAAGTTAATGaataatg
attgaaaaatttaatttatttctcaTTGATTTCATTAAGAATTtccaata
tcaaatcaaagagggaaACTTATTTCTGGCACACCCGGTAGTTACTACCC
TCAGGTATCGAGTtgctaaaaatattatttctaTGTTATCACCCGTGATA
CTTTCTATTTTGCAGGATTTCATTCATAAATGTCTACAGAATAATCCGGC
TGACAGGCCGACCGTGCGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013893XLOC_013893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024737-exon-sc0000509-1491911889:278786..278847TCONS_00024737-exon-sc0000509-1491911889:278786..278847Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1510915933:278786..278847TCONS_00024737-exon-sc0000509-1510915933:278786..278847Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1575043694:278786..278847TCONS_00024737-exon-sc0000509-1575043694:278786..278847Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1491911889:279127..279191TCONS_00024737-exon-sc0000509-1491911889:279127..279191Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1510915933:279127..279191TCONS_00024737-exon-sc0000509-1510915933:279127..279191Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1575043694:279127..279191TCONS_00024737-exon-sc0000509-1575043694:279127..279191Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1491911889:279550..279642TCONS_00024737-exon-sc0000509-1491911889:279550..279642Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1510915933:279550..279642TCONS_00024737-exon-sc0000509-1510915933:279550..279642Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1575043694:279550..279642TCONS_00024737-exon-sc0000509-1575043694:279550..279642Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1491911889:280151..280207TCONS_00024737-exon-sc0000509-1491911889:280151..280207Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1510915933:280151..280207TCONS_00024737-exon-sc0000509-1510915933:280151..280207Clytia hemisphaericaexon
TCONS_00024737-exon-sc0000509-1575043694:280151..280207TCONS_00024737-exon-sc0000509-1575043694:280151..280207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000509supercontigsc0000509:278786..280207 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.861	8.02656	5.82476	8.54792	22.2	15.3499	17.8576	19.814	19.9414	20.9419	19.2843	22.6125	18.1333	11.37	9.63983	10.972	28.5779	21.3748	10.9372	11.445	21.3878	24.0183	15.9259	38.0742	25.4073	27.6048	6.3486	5.26975	19.9846	16.8707
Blast
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BLAST of TCONS_00024737 vs. Swiss-Prot (Human)
Match: NRBP (Nuclear receptor-binding protein OS=Homo sapiens GN=NRBP1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.161e-17
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:   77 HVNCAADIYSFGIVALEMATL--QWAETSTSVTPEMIENAIDSLEDPLQRDFIHKCLQNNPADRPTVR 274
            +V  A DIYSFG+ ALEMA L  Q    S+ V  E I +AI  LEDPLQR+FI KCLQ+ PA RPT R
Sbjct:  252 NVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQREFIQKCLQSEPARRPTAR 319
The following BLAST results are available for this feature:
BLAST of TCONS_00024737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NRBP8.161e-1758.82Nuclear receptor-binding protein OS=Homo sapiens G... [more]
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