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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024738 ID=TCONS_00024738|Name=TCONS_00024738|organism=Clytia hemisphaerica|type=transcript|length=2192bpRun BLAST on NCBI protein sequence of TCONS_00024738-protein >TCONS_00024738-protein ID=TCONS_00024738-protein|Name=TCONS_00024738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp MEVEDAPSAAPETTSPATIQEEKQSYSIELLPLIKEAQQHHGLRHGDYQRRun BLAST on NCBI transcript from alignment at sc0000509:5670..21275- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024738 ID=TCONS_00024738|Name=TCONS_00024738|organism=Clytia hemisphaerica|type=transcript|length=15606bp|location=Sequence derived from alignment at sc0000509:5670..21275- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000509:5670..21275- >TCONS_00024738 ID=TCONS_00024738|Name=TCONS_00024738|organism=Clytia hemisphaerica|type=CDS|length=21528bp|location=Sequence derived from alignment at sc0000509:5670..21275- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024738 vs. Swiss-Prot (Human)
Match: SRP68 (Signal recognition particle subunit SRP68 OS=Homo sapiens GN=SRP68 PE=1 SV=2) HSP 1 Score: 462.611 bits (1189), Expect = 6.818e-153 Identity = 260/577 (45.06%), Postives = 396/577 (68.63%), Query Frame = 1
Query: 286 SYSIELLPLIKEAQQHHGLRHGDXXXXXXXXXXXLKRIRNSLNFKLGTRHGFKGKKITQETVNDPRFLHIILMEAERCWSHAMELKLYANTEPRKKFHMVRKLSKASKYADDLKDLCNIDQVDARTKLEVQAYSYWMTANMKFEVQNWQTAIDLYTQSRSIYEKLSSAFMDEDTKMLYLQRVEEISPNIRYCAYNLGQGGLDINELMKMRSKATG-QDMLAAKIDAAIKETREKLASSFGEVTWRGKTVPLRNEKARVFILRMQNKDEEVQREESFEKKMEVFDNLLMESKDALQGVKEEITAEMSSK----KRNETTLNNLQFMKTHLSYLRQTLMIDRNLEMIENMKLKLPNILGRPAKQQVKGKITKPEDLIRLYDSIIQCLTETSQLSGLEDDEAMERELNAQITSYKAFRCFYIAQSYQAAKKWLESIFLYDRVLKYVEDSCKALNATQNALLKPLERKLEDVAE---QAKGHKYAAHATSILETSEV-ESGIKNVQLND-KVLLDRLETY-QELHTIPKNASLXXXXXXXXXXXCKPLFFDLALNHIDLPDLDHRIEKKQEAGGISGFVKG 1983
S S+E+L +IKE+QQ HGLRHGD+QRYR YC RR +R+R +LNFK+G RH F GKK+T+E + D R+L ++LM+AER WS+AM+LK ANTEPRK+FH++ +L KA K+A++L+ LC ++VDA+TKLE QAY+ +++ ++FE Q W+ AI+ + + ++IYEKL+SAF +E +LY QRVEEISPNIRYCAYN+G INELM+MR ++ G + +LA K++A I +TR K A++ EV WRG+TVP++ +K R+F+L + + + + + ES E K +F+++L E +DA+Q V+EE+ + + + ++NLQ++ ++L+Y++ + I RN ENM L L + + + +P+DLIRLYD I+Q L E QL GLE+D+A ++E+ + +KA+RCF+IAQSY KKW E++ LYDRVLKY + A +N+L + L DV E Q + K + A +IL+ ++ ++ + Q+ D K L++R ET+ + + K A+LV FPP QP+PCKPLFFDLALNH+ P L+ ++E+K ++ G++G++KG
Sbjct: 57 SLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQA-VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAIVQAESEETKERLFESMLSECRDAIQVVREELKPDQKQRDYILEGEPGKVSNLQYLHSYLTYIKLSTAIKRN----ENMAKGLQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSL-----KDLPDVQELITQVRSEKCSLQAAAILDANDAHQTETSSSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKS-GLTGYIKG 621 The following BLAST results are available for this feature:
BLAST of TCONS_00024738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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