TCONS_00024745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024745
Unique NameTCONS_00024745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1032

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024745 ID=TCONS_00024745|Name=TCONS_00024745|organism=Clytia hemisphaerica|type=transcript|length=1032bp
NNAGATTTGATATATTTACAGGCGAGGAAACAGAAGTGGGTAGAGAAGAC
TGTGAAGGAAAGGAATCTAGTAAAAGAGAATCACTGGCACTGGAATCCTG
GGTGGTCACTGGCCCCACAGAAGATGCAGACATGGAGAAATCTGCAGTTA
TTGGAAGTTCGAGTACACAACCCTTGGTTCCATTTCCGGCACACTTGGCC
ACTAAAGCCGGCAGTCTGGGATCGCTGGGGGGCAGGAAAGGGCGGTGGCC
TGGAACCATGTTGGGGAGGCACAGAGAAACGAGAGGGGGCCTGAAAATTG
GATGAGACACTGTGGGAATTTGATCCGAAAGAGCCTGGTTGGGTGGGTGG
GAACCCAGGGGCCCGGGGCTTTTGAAAACTCTGCTGACTACTGCCAAACG
ATTGCAACTTATTCATGTTAGGAGCTGCTGGACTCTTGCCCTTTGCAGGG
CAGGAGGGAGAGAGATGGCCACTGGAGCCACAGGTAAAACACTTAGCTCT
TAAAATTTGATCCCTTACAtacaaattaaaaatatatcCGTCAGTTGAGC
CCCACGTCACTTTCTGTGGGTTGTTGGCGAGGGACTGACGAAATGCTTTG
TCATAGTTATACCAGGCTGAGAAGGTGTATTGATTCGCCAAGTTTGTAAT
ATAGAGTTGATATTGTAAAAGTTGCTCAGCCAAATGGGCTCTGAATTGTA
ACatgatttgaaagaaaaaagtccAAGCTAGGGACCAAGTAAGAAAATCC
GTGACTTTTGCTTTGTACTTCGAATTGTCTTTTGTCGAGGTGTCATTGTT
GCTGGCCAAAGAAATACTGTCCCCGTCAAAACTCAGGGAAATATGGGTGT
TGGTGGCTCGCCCTACATTCTGAGGAAGCAAAGAATCAAAATTTACGAAC
TCACCACGTCTGATCCTGTTGATAACATTGGCTGAGACGGGAGGTAGTTG
CAAATTCGAAAGTTCTTGAGGGCGGCCATTTTGATCGTCTTGTTGTTGAG
AGTGGAGGGAAAGGAAATTTGCCGGCGCCGAg
Run BLAST on NCBI

transcript from alignment at sc0000509:272563..273721-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024745 ID=TCONS_00024745|Name=TCONS_00024745|organism=Clytia hemisphaerica|type=transcript|length=1159bp|location=Sequence derived from alignment at sc0000509:272563..273721- (Clytia hemisphaerica)
NNAGATTTGATATATTTACAGGCGAGGAAACAGAAGTGGGTAGAGAAGAC
TGTGAAGGAAAGGAATCTAGTAAAAGAGAATCACTGGCACTGGAATCCTG
GGTGGTCACTGGCCCCACAGAAGATGCAGACATGGAGAAATCTGCAGTTA
TTGGAAGTTCGAGTACACAACCCTTGGTTCCATTTCCGGCACACTTGGCC
ACTAAAGCCGGCAGTCTGGGATCGCTGGGGGGCAGGAAAGGGCGGTGGCC
TGGAACCATGTTGGGGAGGCACAGAGAAACGAGAGGGGGCCTGAAAATTG
GATGAGACACTGTGGGAATTTGATCCGAAAGAGCCTGGTTGGGTGGGTGG
GAACCCAGGGGCCCGGGGCTTTTGAAAACTCTGCTGACTACTGCCAAACG
ATTGCAACTTATTCATGTTAGGAGCTGCTGGACTCTTGCCCTTTGCAGGG
CAGGAGGGAGAGAGATGGCCACTGGAGCCACAGGTAAAACACTTAGCTCT
TAAAATTTGANGGACTACTGCCAAACGAATGAAACTTATTCATGCTAGGA
GCTGCTGGACTCTTGCCCTTTGCAGGGCAGGAGGGAGAGAGATGGCCACT
AGAGCCACAGGTAAAACACTTAGCTCTTAAAATTTGATCCCTTACATACA
AATTAAAAATATATCCGTCAGTTGAGCCCCACGTCACTTTCTGTGGGTTG
TTGGCGAGGGACTGACGAAATGCTTTGTCATAGTTATACCAGGCTGAGAA
GGTGTATTGATTCGCCAAGTTTGTAATATAGAGTTGATATTGTAAAAGTT
GCTCAGCCAAATGGGCTCTGAATTGTAACATGATTTGAAAGAAAAAAGTC
CAAGCTAGGGACCAAGTAAGAAAATCCGTGACTTTTGCTTTGTACTTCGA
ATTGTCTTTTGTCGAGGTGTCATTGTTGCTGGCCAAAGAAATACTGTCCC
CGTCAAAACTCAGGGAAATATGGGTGTTGGTGGCTCGCCCTACATTCTGA
GGAAGCAAAGAATCAAAATTTACGAACTCACCACGTCTGATCCTGTTGAT
AACATTGGCTGAGACGGGAGGTAGTTGCAAATTCGAAAGTTCTTGAGGGC
GGCCATTTTGATCGTCTTGTTGTTGAGAGTGGAGGGAAAGGAAATTTGCC
GGCGCCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013900XLOC_013900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024745-exon-sc0000509-1575043694:273239..273721TCONS_00024745-exon-sc0000509-1575043694:273239..273721Clytia hemisphaericaexon
TCONS_00024745-exon-sc0000509-1575043694:272563..273111TCONS_00024745-exon-sc0000509-1575043694:272563..273111Clytia hemisphaericaexon
TCONS_00024745-exon-sc0000509-1510915933:273239..273721TCONS_00024745-exon-sc0000509-1510915933:273239..273721Clytia hemisphaericaexon
TCONS_00024745-exon-sc0000509-1510915933:272563..273111TCONS_00024745-exon-sc0000509-1510915933:272563..273111Clytia hemisphaericaexon
TCONS_00024745-exon-sc0000509-1491911889:273239..273721TCONS_00024745-exon-sc0000509-1491911889:273239..273721Clytia hemisphaericaexon
TCONS_00024745-exon-sc0000509-1491911889:272563..273111TCONS_00024745-exon-sc0000509-1491911889:272563..273111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000509supercontigsc0000509:272563..273721 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25832	1.73627	1.13331	1.07973	28.9514	23.5063	29.2256	31.3713	8.00471	18.7831	16.0537	12.095	35.4697	42.9762	26.8399	45.6217	29.0872	31.6736	20.375	27.4598	27.6864	25.2306	9.25992	13.2453	23.3565	29.38	25.1513	22.6423	14.3717	15.1091
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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