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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024768 ID=TCONS_00024768|Name=TCONS_00024768|organism=Clytia hemisphaerica|type=transcript|length=2376bp
AAATTGTTCTAGAAACGCATTCATGTTACCAGGTTCTCAGGGAGTCATTA
TTTTGGGTGTAGTTCCATTAACGGATTTCAAATTAATTACGAGACTTTCA
AAAGCTAAAAGTAAATGTTTGTttaagaaagattttgaaacaaaagTACC
ATAAGACAAACAAAGTATTATCGTACCAagcaagttatcaaatgttttat
TGATATAAACTTGATCACCTTTATAAAGAGACTTGCGGATTTTGAAGTGA
GACTTTGCATGAGGGCTACTTATATATTTAAAACGTTAATCTAGTGGTAG
GAAGTAAGATAAGGTTTTCAACCACAATCGTCATGCTCAAGGTTTTAACC
TTTTTAACCTTGATTATATCCACCAAGACATTCGATATCTCactaaatga
aaatcaaaagattATTTTAAGAGAATTTGACGACTTGTTGAACTCGAAAG
TCGACAAAACAACCGGCCTTTTTGACGGCGTCGGTAGCATTGATGTCGCC
GTATGGAAGAAAGATGGTCAAACTCAGAACGTCAGTCCTGTTTTCATTCG
TTCGCTCGGCAAATCACAAATTAAACCAGTCTTAGAGAACATTCAACATG
TGAACATTTCAAAACCATCAGTGCCATTGCAACGACTTTCAGACGAATAC
TTGGATATCAATCAAATGAATACAGATATGTTGCCAGCGATGAATAGTAC
TGAACGCAACCAATACCGCATTGCATCAATCTCCAAGTCATTCTTGGGAT
ATATTGCTGATTATCTGGCAATGCATCGTGGGTTAGATCTCAATGAAAAG
ATTTCACCGAAGTACATCGACCTTTCATCGCTTGGTAAAGCACACGGATG
GGATACTGCACTACCACAAAACGGATTCTCTTCAAACGCCATCAATTCGT
CTGTTTTCACCAACTCAATCACATTCCAACACTTGTTATCTCACACATCG
GGTTTATCACGCGAAAGTATGAAAGCCACCACATATGGGTATGGATCAAG
CAGAACATCAACTCCAGCATGTCCACCAGAGACGCCCTCCTGCTCTAACG
ACCGCGATTTGAACTGGAGACCTTGGACCAAACACATACTCCAATACATG
ATGCCAGCGTGCGGTTACACCAAGTATCCAGAATCAAGCAAAACACTCGA
TACCTGTTTACCAGGACAATATTATCATTACTCAAACGCCGGATATTCCA
TCCTTGGTTTAGCTCTCGACTCTTATATGAAAATGCAAATTAAGAAGACC
AcattggaagaatttttcaccCGTCACCTTACCGAAGGTGGACTGGAAGA
CACCGTACAGAGTTGGATTTTCTACAATGCGCAACAACGCAACCGAACAA
CGCACGGATGCCAGGGAGGTTCAGATAAAGAGCATTGCAACCAAAAAAGA
GCTTTGACCGATTACGCAGACCGTGGCATCAAGACACCTCCAGGAGGTAT
CTGGTCTACCACCGACAACCTAGCACATTTGATGTTACAGACTATCCAAA
ACAACTCCAGACTCTTCAACAACCTGATAAACAGCCCTCCATCACAGAAA
CCATCATATGATGCCCAATCTGAAGAGGATCCTTCTCACATGCCGTTGAC
TGTGTTCAGATACCACCACGGCTTCTACATCGCCGACAACTACACCTGCT
TAGCTTCACAAAATGGTAGGATTCTGTATGGTTCTTGGGGAACTGTGCCA
GGCTTCACCTCCTACATCATCAGCAATAAACCAAGAGAAGTTGGTGAAGA
CCAATACGCTGTAGTCATGTTGAGATCTTACAACTACAATAAGAGATTGA
ACCTCGGTAACCAGGCCAGGAGATTGTTATGGCGTTTGTTGAATCCATCG
CATGAAAAGAAAGAGCTGAGATGTCCAGTTACCGTTTGTGATGATCATTG
TGTTGGTGATCACATTCAAGGAACAACACCTTCATCTGCTAACAAATTAT
CTGTTTTTCATCAAACCTTTACATGTTATATCCTTGCTTTTGCTATTGGT
GTAGGAATGATTTTAAAAACTGTTTGATGACCTGTCAGTCCagaatttca
tcaaaaataagGTCAACCTAaaaaggtttctatataccgttggaaagata
attttatcagctttcgAATGTGGGGTAGAGCCGATTTTTTCGTCATGGGG
AAAAAAAGCTATGGACAAAATGTGGTAAATGTTGCAAATGTCGCTCTTTC
GTCACGTGTGTTCATGGACTATTAATGTAATTTTTTATAAACCCTTCGTA
CTGGAGATTGATGGTTGATTATTTATCTgcaattttaaaatataaaaatt
ttaatttttattttgtgacaaataaacaaagctgATTTTAAGATTATAAA
TTAAATAAAGGAACGAAAAATTAAGT Run BLAST on NCBI protein sequence of TCONS_00024768-protein >TCONS_00024768-protein ID=TCONS_00024768-protein|Name=TCONS_00024768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
MLKVLTFLTLIISTKTFDISLNENQKIILREFDDLLNSKVDKTTGLFDGV
GSIDVAVWKKDGQTQNVSPVFIRSLGKSQIKPVLENIQHVNISKPSVPLQ
RLSDEYLDINQMNTDMLPAMNSTERNQYRIASISKSFLGYIADYLAMHRG
LDLNEKISPKYIDLSSLGKAHGWDTALPQNGFSSNAINSSVFTNSITFQH
LLSHTSGLSRESMKATTYGYGSSRTSTPACPPETPSCSNDRDLNWRPWTK
HILQYMMPACGYTKYPESSKTLDTCLPGQYYHYSNAGYSILGLALDSYMK
MQIKKTTLEEFFTRHLTEGGLEDTVQSWIFYNAQQRNRTTHGCQGGSDKE
HCNQKRALTDYADRGIKTPPGGIWSTTDNLAHLMLQTIQNNSRLFNNLIN
SPPSQKPSYDAQSEEDPSHMPLTVFRYHHGFYIADNYTCLASQNGRILYG
SWGTVPGFTSYIISNKPREVGEDQYAVVMLRSYNYNKRLNLGNQARRLLW
RLLNPSHEKKELRCPVTVCDDHCVGDHIQGTTPSSANKLSVFHQTFTCYI
LAFAIGVGMILKTV Run BLAST on NCBI transcript from alignment at sc0000510:78596..81341+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024768 ID=TCONS_00024768|Name=TCONS_00024768|organism=Clytia hemisphaerica|type=transcript|length=2746bp|location=Sequence derived from alignment at sc0000510:78596..81341+ (Clytia hemisphaerica)
AAATTGTTCTAGAAACGCATTCATGTTACCAGGTTCTCAGGGAGTCATTA
TTTTGGGTGTAGTTCCATTAACGGATTTCAAATTAATTACGAGACTTTCA
AAAGCTAAAAGTAAATGTTTGTttaagaaagattttgaaacaaaagTACC
ATAAGACAAACAAAGTATTATCGTACCAagcaagttatcaaatgttttat
TGATATAAACTTGATCACCTTTATAAAGAGACTTGCGGATTTTGAAGTGA
GACTTTGCATGAGGGCTACTTATATATTTAAAACGTTAATCTAGTGGTAG
GAAGTAAGATAAGGTTTTCAACCACAATCGTCATGCTCAAGGTTTTAACC
TTTTTAACCTTGATTATATCCACCAAGACATTCGATATCTCactaaatga
aaatcaaaagattATTTTAAGAGAATTTGACGACTTGTTGAACTCGAAAG
TCGACAAAACAACCGGCCTTTTTGACGGCGTCGGTAGCATTGATGTCGCC
GTATGGAAGAAAGATGGTCAAACTCAGAACGTCAGTCCTGTTTTCATTCG
TTCGCTCGGCAAATCACAAATTAAACCAGTCTTAGAGAACATTCAACATG
TGAACATTTCAAAACCATCAGTGCCATTGCAACGACTTTCAGACGAATAC
TTGGATATCAATCAAATGAATACAGATATGTTGCCAGCGATGAATAGTAC
TGAACGCAACCAATACCGCATTGCATCAATCTCCAAGTCATTCTTGGGAT
ATATTGCTGATTATCTGGCAATGCATCGTGGGTTAGATCTCAATGAAAAG
GtactaaaactttttttaccattttttcaGAGCGTTCCCTTCAATTTTCT
TGATTCTTAAAGAATGCTGGAAACTTTTCAATCCATTTTTTCAATTGAAC
TATCTAGAATACCCTACCAGGTTCAGTAGACATAGTAGCGTTATATTTTC
CATTTCCCATTGCTCGTTAGTGTTAGAACAAAGAAAAATTCGTCAGAGTA
AAGTTCCGGGAGGTTCGatctttgataatttttctttattgagtTTCGAT
ACGTTGAAGAACGGAGATTGTAGTAAGATCGATAATACGAGATGTGATCA
GTTAAAACTTGCCAGTTCTAGCCAATTTACTTAACTCAACTTACTCAACT
CGTTTAATTTATCTCCTCAGATTTCACCGAAGTACATCGACCTTTCATCG
CTTGGTAAAGCACACGGATGGGATACTGCACTACCACAAAACGGATTCTC
TTCAAACGCCATCAATTCGTCTGTTTTCACCAACTCAATCACATTCCAAC
ACTTGTTATCTCACACATCGGGTTTATCACGCGAAAGTATGAAAGCCACC
ACATATGGGTATGGATCAAGCAGAACATCAACTCCAGCATGTCCACCAGA
GACGCCCTCCTGCTCTAACGACCGCGATTTGAACTGGAGACCTTGGACCA
AACACATACTCCAATACATGATGCCAGCGTGCGGTTACACCAAGTATCCA
GAATCAAGCAAAACACTCGATACCTGTTTACCAGGACAATATTATCATTA
CTCAAACGCCGGATATTCCATCCTTGGTTTAGCTCTCGACTCTTATATGA
AAATGCAAATTAAGAAGACCAcattggaagaatttttcaccCGTCACCTT
ACCGAAGGTGGACTGGAAGACACCGTACAGAGTTGGATTTTCTACAATGC
GCAACAACGCAACCGAACAACGCACGGATGCCAGGGAGGTTCAGATAAAG
AGCATTGCAACCAAAAAAGAGCTTTGACCGATTACGCAGACCGTGGCATC
AAGACACCTCCAGGAGGTATCTGGTCTACCACCGACAACCTAGCACATTT
GATGTTACAGACTATCCAAAACAACTCCAGACTCTTCAACAACCTGATAA
ACAGCCCTCCATCACAGAAACCATCATATGATGCCCAATCTGAAGAGGAT
CCTTCTCACATGCCGTTGACTGTGTTCAGATACCACCACGGCTTCTACAT
CGCCGACAACTACACCTGCTTAGCTTCACAAAATGGTAGGATTCTGTATG
GTTCTTGGGGAACTGTGCCAGGCTTCACCTCCTACATCATCAGCAATAAA
CCAAGAGAAGTTGGTGAAGACCAATACGCTGTAGTCATGTTGAGATCTTA
CAACTACAATAAGAGATTGAACCTCGGTAACCAGGCCAGGAGATTGTTAT
GGCGTTTGTTGAATCCATCGCATGAAAAGAAAGAGCTGAGATGTCCAGTT
ACCGTTTGTGATGATCATTGTGTTGGTGATCACATTCAAGGAACAACACC
TTCATCTGCTAACAAATTATCTGTTTTTCATCAAACCTTTACATGTTATA
TCCTTGCTTTTGCTATTGGTGTAGGAATGATTTTAAAAACTGTTTGATGA
CCTGTCAGTCCagaatttcatcaaaaataagGTCAACCTAaaaaggtttc
tatataccgttggaaagataattttatcagctttcgAATGTGGGGTAGAG
CCGATTTTTTCGTCATGGGGAAAAAAAGCTATGGACAAAATGTGGTAAAT
GTTGCAAATGTCGCTCTTTCGTCACGTGTGTTCATGGACTATTAATGTAA
TTTTTTATAAACCCTTCGTACTGGAGATTGATGGTTGATTATTTATCTgc
aattttaaaatataaaaattttaatttttattttgtgacaaataaacaaa
gctgATTTTAAGATTATAAATTAAATAAAGGAACGAAAAATTAAGT Coding sequence (CDS) from alignment at sc0000510:78596..81341+ >TCONS_00024768 ID=TCONS_00024768|Name=TCONS_00024768|organism=Clytia hemisphaerica|type=CDS|length=3390bp|location=Sequence derived from alignment at sc0000510:78596..81341+ (Clytia hemisphaerica)
ATGCTCAAGGTTTTAACCTTTTTAACCTTGATTATATCCACCAAGACATT
CGATATCTCactaaatgaaaatcaaaagattATTTTAAGAGAATTTGACG
ACTTGTTGAACTCGAAAGTCGACAAAACAACCGGCCTTTTTGACGGCGTC
GGTAGCATTGATGTCGCCGTATGGAAGAAAGATGGTCAAACTCAGAACGT
CAGTCCTGTTTTCATTCGTTCGCTCGGCAAATCACAAATTAAACCAGTCT
TAGAGAACATTCAACATGTGAACATTTCAAAACCATCAGTGCCATTGCAA
CGACTTTCAGACGAATACTTGGATATCAATCAAATGAATACAGATATGTT
GCCAGCGATGAATAGTACTGAACGCAACCAATACCGCATTGCATCAATCT
CCAAGTCATTCTTGGGATATATTGCTGATTATCTGGCAATGCATCGTGGG
TTAGATCTCAATGAAAAGATTTCACCGAAGTACATCGACCTTTCATCGCT
TGGTAAAGCACACGGATGGGATACTGCACTACCACAAAACGGATTCTCTT
CAAACGCCATCAATTCGTCTGTTTTCACCAACTCAATCACATTCCAACAC
TTGTTATCTCACACATCGGGTTTATCACGCGAAAGTATGAAAGCCACCAC
ATATGGGTATGGATCAAGCAGAACATCAACTCCAGCATGTCCACCAGAGA
CGCCCTCCTGCTCTAACGACCGCGATTTGAACTGGAGACCTTGGACCAAA
CACATACTCCAATACATGATGCCAGCGTGCGGTTACACCAAGTATCCAGA
ATCAAGCAAAACACTCGATACCTGTTTACCAGGACAATATTATCATTACT
CAAACGCCGGATATTCCATCCTTGGTTTAGCTCTCGACTCTTATATGAAA
ATGCAAATTAAGAAGACCAcattggaagaatttttcaccCGTCACCTTAC
CGAAGGTGGACTGGAAGACACCGTACAGAGTTGGATTTTCTACAATGCGC
AACAACGCAACCGAACAACGCACGGATGCCAGGGAGGTTCAGATAAAGAG
CATTGCAACCAAAAAAGAGCTTTGACCGATTACGCAGACCGTGGCATCAA
GACACCTCCAGGAGGTATCTGGTCTACCACCGACAACCTAGCACATTTGA
TGTTACAGACTATCCAAAACAACTCCAGACTCTTCAACAACCTGATAAAC
AGCCCTCCATCACAGAAACCATCATATGATGCCCAATCTGAAGAGGATCC
TTCTCACATGCCGTTGACTGTGTTCAGATACCACCACGGCTTCTACATCG
CCGACAACTACACCTGCTTAGCTTCACAAAATGGTAGGATTCTGTATGGT
TCTTGGGGAACTGTGCCAGGCTTCACCTCCTACATCATCAGCAATAAACC
AAGAGAAGTTGGTGAAGACCAATACGCTGTAGTCATGTTGAGATCTTACA
ACTACAATAAGAGATTGAACCTCGGTAACCAGGCCAGGAGATTGTTATGG
CGTTTGTTGAATCCATCGCATGAAAAGAAAGAGCTGAGATGTCCAGTTAC
CGTTTGTGATGATCATTGTGTTGGTGATCACATTCAAGGAACAACACCTT
CATCTGCTAACAAATTATCTGTTTTTCATCAAACCTTTACATGTTATATC
CTTGCTTTTGCTATTGGTGTAGGAATGATTTTAAAAACTGTTTGAATGCT
CAAGGTTTTAACCTTTTTAACCTTGATTATATCCACCAAGACATTCGATA
TCTCactaaatgaaaatcaaaagattATTTTAAGAGAATTTGACGACTTG
TTGAACTCGAAAGTCGACAAAACAACCGGCCTTTTTGACGGCGTCGGTAG
CATTGATGTCGCCGTATGGAAGAAAGATGGTCAAACTCAGAACGTCAGTC
CTGTTTTCATTCGTTCGCTCGGCAAATCACAAATTAAACCAGTCTTAGAG
AACATTCAACATGTGAACATTTCAAAACCATCAGTGCCATTGCAACGACT
TTCAGACGAATACTTGGATATCAATCAAATGAATACAGATATGTTGCCAG
CGATGAATAGTACTGAACGCAACCAATACCGCATTGCATCAATCTCCAAG
TCATTCTTGGGATATATTGCTGATTATCTGGCAATGCATCGTGGGTTAGA
TCTCAATGAAAAGATTTCACCGAAGTACATCGACCTTTCATCGCTTGGTA
AAGCACACGGATGGGATACTGCACTACCACAAAACGGATTCTCTTCAAAC
GCCATCAATTCGTCTGTTTTCACCAACTCAATCACATTCCAACACTTGTT
ATCTCACACATCGGGTTTATCACGCGAAAGTATGAAAGCCACCACATATG
GGTATGGATCAAGCAGAACATCAACTCCAGCATGTCCACCAGAGACGCCC
TCCTGCTCTAACGACCGCGATTTGAACTGGAGACCTTGGACCAAACACAT
ACTCCAATACATGATGCCAGCGTGCGGTTACACCAAGTATCCAGAATCAA
GCAAAACACTCGATACCTGTTTACCAGGACAATATTATCATTACTCAAAC
GCCGGATATTCCATCCTTGGTTTAGCTCTCGACTCTTATATGAAAATGCA
AATTAAGAAGACCAcattggaagaatttttcaccCGTCACCTTACCGAAG
GTGGACTGGAAGACACCGTACAGAGTTGGATTTTCTACAATGCGCAACAA
CGCAACCGAACAACGCACGGATGCCAGGGAGGTTCAGATAAAGAGCATTG
CAACCAAAAAAGAGCTTTGACCGATTACGCAGACCGTGGCATCAAGACAC
CTCCAGGAGGTATCTGGTCTACCACCGACAACCTAGCACATTTGATGTTA
CAGACTATCCAAAACAACTCCAGACTCTTCAACAACCTGATAAACAGCCC
TCCATCACAGAAACCATCATATGATGCCCAATCTGAAGAGGATCCTTCTC
ACATGCCGTTGACTGTGTTCAGATACCACCACGGCTTCTACATCGCCGAC
AACTACACCTGCTTAGCTTCACAAAATGGTAGGATTCTGTATGGTTCTTG
GGGAACTGTGCCAGGCTTCACCTCCTACATCATCAGCAATAAACCAAGAG
AAGTTGGTGAAGACCAATACGCTGTAGTCATGTTGAGATCTTACAACTAC
AATAAGAGATTGAACCTCGGTAACCAGGCCAGGAGATTGTTATGGCGTTT
GTTGAATCCATCGCATGAAAAGAAAGAGCTGAGATGTCCAGTTACCGTTT
GTGATGATCATTGTGTTGGTGATCACATTCAAGGAACAACACCTTCATCT
GCTAACAAATTATCTGTTTTTCATCAAACCTTTACATGTTATATCCTTGC
TTTTGCTATTGGTGTAGGAATGATTTTAAAAACTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024768-exon-sc0000510-1491911889:78596..79395 | TCONS_00024768-exon-sc0000510-1491911889:78596..79395 | Clytia hemisphaerica | exon |
| TCONS_00024768-exon-sc0000510-1510915933:78596..79395 | TCONS_00024768-exon-sc0000510-1510915933:78596..79395 | Clytia hemisphaerica | exon |
| TCONS_00024768-exon-sc0000510-1575043694:78596..79395 | TCONS_00024768-exon-sc0000510-1575043694:78596..79395 | Clytia hemisphaerica | exon |
| TCONS_00024768-exon-sc0000510-1491911889:79766..81341 | TCONS_00024768-exon-sc0000510-1491911889:79766..81341 | Clytia hemisphaerica | exon |
| TCONS_00024768-exon-sc0000510-1510915933:79766..81341 | TCONS_00024768-exon-sc0000510-1510915933:79766..81341 | Clytia hemisphaerica | exon |
| TCONS_00024768-exon-sc0000510-1575043694:79766..81341 | TCONS_00024768-exon-sc0000510-1575043694:79766..81341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000510 | supercontig | sc0000510:78596..81341 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001466 | Beta-lactam-related |
| IPR012338 | Beta-lactam/transpept-like |
Blast
The following BLAST results are available for this feature:
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