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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024773 ID=TCONS_00024773|Name=TCONS_00024773|organism=Clytia hemisphaerica|type=transcript|length=5385bpRun BLAST on NCBI protein sequence of TCONS_00024773-protein >TCONS_00024773-protein ID=TCONS_00024773-protein|Name=TCONS_00024773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1225bp MSIALASPRHVFGFKSNVANNLWYLDEQTIVYPSGSNCILYNIDQRTQKFRun BLAST on NCBI transcript from alignment at sc0000510:28831..46270- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024773 ID=TCONS_00024773|Name=TCONS_00024773|organism=Clytia hemisphaerica|type=transcript|length=17440bp|location=Sequence derived from alignment at sc0000510:28831..46270- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000510:28831..46270- >TCONS_00024773 ID=TCONS_00024773|Name=TCONS_00024773|organism=Clytia hemisphaerica|type=CDS|length=77238bp|location=Sequence derived from alignment at sc0000510:28831..46270- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024773 vs. Swiss-Prot (Human)
Match: CFA57 (Cilia- and flagella-associated protein 57 OS=Homo sapiens GN=CFAP57 PE=2 SV=3) HSP 1 Score: 1387.86 bits (3591), Expect = 0.000e+0 Identity = 714/1227 (58.19%), Postives = 939/1227 (76.53%), Query Frame = 2
Query: 1541 MSIALASPRHVFGFKSNVANNLWYLDEQTIVYPSGSNCILYNIDQRTQKFIPCTENGNGITAIAVSPNRRYVAIAEKA-DKPTITIYDLHSL--RKRKVLSTPECQSLEFVSISFSPDSKYLIAQGGRPDWTLFYWTWEKAKVLASTKSSNQQNSAIYQVTFNPNDNTHVCVTGHGIFKLFRYSENNLKQFAFQKADLHRHYLCQSWLNEEKLLVGTDSGKVLLFEGGELKGDFPVIENTLEKXXXXXXXXXXXXXXXLADLTSSKTVQPA------------TSVP---FIAAYSKGFVCSGGLGAIYVYXXXXXXXXXXXXXXIRIPIDQQSADPSLTCNQQITCIALSPSEETVVCSTNSNQLYTIPLSSADIGKQGEIAEFEMLAQSFHHGQITGLDVCIRKPLMATCGMDRSIRIWNFDSCTLELYKVFQEEAYSIALHPSGLYVLVGFSDKLRLMNLLIDDIRPFKEFTIRGCRECCFSNGGHLFAAVHGNVIQLYSTSTFENIGNLKGHNGKVRCIRWNADDSKLISCGMDGAIYEWNMFTYKRDGESILKSCSYSCVSVSPDSRTMYAVGSDRSIKEICDGQILRDVPSDDCVLTQVALSRSGRMLFAGTNNGTVRSFKFPLSVPGEWQEHQTHAGAISKMRISYDDQYLITVSEDCCLFVYKISDKEGRG-KRDRDVPYAEEVLITKSDLEEKNTVMSELKTRVEELKMENEYQLRLKDMNYNEKIKELTEKFIQEMESLKTKNQMLXXXXXXXXXXXXXXVSEQGETHIKELEDIESANNKKLMSEYEKYQELQTKSQRMQEDYERQLQQMEEAREHAXXXXXXXXXXXXQDKTSTLEQANEESRQHLREYEETKKQIEEDADREILDIKNKYERKLREEKEANLRLKGETGIMRRKFTSLQKEIEDHKAEIQRLHGEESKLQGIIKSLEKDIYGLKKEIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPRENDIKEMKEQIQEMESELERFHKQNTGLELNIAELRLKLKATEKELYGERQTVHDKQALVKRFKTDLHNAAGFIQEPKKLKEHVKELYGKYVS-DDTPEEASVDLDIQKEYARQREHLERSVASLRKKLAKDTEIHRADNVRIMQENVYLIKEINDLRRELKNARTQVHDLEASINVMRK--HQNAGGMSTTSLLERRDSSDEGNKTTELNKMIDLQKTEMRRLRAQIVDME 5155
MS +A HVFG +S+VANN++Y DEQ I++PSG++C+ YN+DQ+ QKFIP +E G+ A+++SPNRRY+AI+E +KP ITIY+L S+ RKRKVL+ + Q +F+S++FSPDSKYL+AQ P+ L YW WEK KV+A + + QN+ +YQV+F+P DNT VCVTG+G+FKL R++E LKQ +FQ+ + ++YL +W+ ++K++VGTD+GK+ LFE G+ + + ++ E + + L SL + + P+ S+P IAAYSKGF CS G G + ++EK EEK+ +++ +EIRIP+D QS DPS + Q + C+ SPSEET+V ST+ NQLY+I +S +I K GE A FE L H ITGL CIRKPL+ATC +DRSIR+WN+++ TLEL+K +QEEAYSI+LHPSG +++VGF+DKLRLMNLLIDDIR FKE+++RGC EC FSNGGHLFAAV+GNVI +Y+T++ ENI +LKGH GK+R I WNADDSKLIS G DGA+YEWN+ T KR+ E +LKSCSY+CV+VSPD++ ++AVGSD ++KEI D ILR++ + D T + +S SGRM+F GT+ GT+R+ K+PL + E+ E+Q HAG I+KM +++DDQ+L+T +ED CLF +K+ DK+GRG KR+R+V +AEEVL+TK+D+EEK VM ELKTRVEELKMENEYQLRLKDMNY+EKIKELT+KFIQEMESLKTKNQ+L+T+K+K+ H E + + + +EL+D+E NN+KL+ EYEKYQELQ KSQRMQE+YE+QL+ +E + ALEELTE+YE KLQ+KT+ LE+A E+ RQ LRE+EETKKQIEED DREI DIK KYE+KLR+EKE+NLRLKGETGIMR+KF+SLQKEIE+ +I+ L GE+ KLQG+IKSLEKDI GLK+EIQERDETIQDKEKRIYDLKKKNQEL KFKFVLDYKIKELKKQIEPREN+I+ MKEQIQEME+ELE FHKQNT LELNI EL KL+AT++E+ ERQ D +ALVKRFKTDLHN +IQEP+ LKE V+ L+ KYV D E A ++ D+Q+EY RQREHLER++A+L+KK+ K+ E+HR D VRIMQENV LIKEIN+LRRELK R+QV+DLEA++ + +K Q + + + N+ E ++I++Q+ E++RLR QI + E
Sbjct: 1 MSAVVAQTLHVFGLRSHVANNIFYFDEQIIIFPSGNHCVKYNVDQKWQKFIPGSEKSQGMLALSISPNRRYLAISETVQEKPAITIYELSSIPCRKRKVLNNFDFQVQKFISMAFSPDSKYLLAQTSPPESNLVYWLWEKQKVMAIVRI-DTQNNPVYQVSFSPQDNTQVCVTGNGMFKLLRFAEGTLKQTSFQRGE-PQNYLAHTWVADDKIVVGTDTGKLFLFESGDQRWETSIM--VKEPTNGSKSLDVIQESESLIEFPPVSSPLPSYEQMVAASSHSQMSMPQVFAIAAYSKGFACSAGPGRVLLFEKMEEKDFYRESREIRIPVDPQSNDPSQSDKQDVLCLCFSPSEETLVASTSKNQLYSITMSLTEISK-GEPAHFEYLMYPLHSAPITGLATCIRKPLIATCSLDRSIRLWNYETNTLELFKEYQEEAYSISLHPSGHFIVVGFADKLRLMNLLIDDIRSFKEYSVRGCGECSFSNGGHLFAAVNGNVIHVYTTTSLENISSLKGHTGKIRSIVWNADDSKLISGGTDGAVYEWNLSTGKRETECVLKSCSYNCVTVSPDAKIIFAVGSDHTLKEIADSLILREISAFDVTYTAIVISHSGRMMFVGTSVGTIRAMKYPLPLQKEFNEYQAHAGPITKMLLTFDDQFLLTAAEDGCLFTWKVFDKDGRGIKREREVGFAEEVLVTKTDMEEKAQVMLELKTRVEELKMENEYQLRLKDMNYSEKIKELTDKFIQEMESLKTKNQVLRTEKEKQDVYHHEHIEDLLDKQSRELQDMECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTTLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYEKKLRDEKESNLRLKGETGIMRKKFSSLQKEIEERTNDIETLKGEQMKLQGVIKSLEKDIQGLKREIQERDETIQDKEKRIYDLKKKNQELGKFKFVLDYKIKELKKQIEPRENEIRVMKEQIQEMEAELENFHKQNTQLELNITELWQKLRATDQEMRRERQKERDLEALVKRFKTDLHNCVAYIQEPRLLKEKVRGLFEKYVQRADMVEIAGLNTDLQQEYTRQREHLERNLATLKKKVVKEGELHRTDYVRIMQENVSLIKEINELRRELKFTRSQVYDLEAALKLTKKVRPQEVSETEPSRDMLSTAPTARLNEQEETGRIIEMQRLEIQRLRDQIQEQE 1222 The following BLAST results are available for this feature:
BLAST of TCONS_00024773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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