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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024789 ID=TCONS_00024789|Name=TCONS_00024789|organism=Clytia hemisphaerica|type=transcript|length=2086bp
CGTTTTGAGAGAATTATTGTTTTGGAAGTTTAATCTACGTGAGTTGAATA
ACAAATCAataagaaaatatgaaattccagatttaaaagttttttcagat
gcAAGTGCCACGGGAATTGGTGCAAttcttgataaaaatgtatGTTATAG
AAACTTGAAGCGGTTAGAAATAGAAGAAAGTTCTACCTTTAGAGAATTAT
TGGCTATTAAATATGCGATAGATTCTTTTGACGAAATGTTAGATAGTAAA
ACGATTTTATGGCACACAGACAATATAAGCACAGCGATCATTATCAGGGT
AGGTAGCAATAAAGATTTGTTGCAAGGTTTAGCGAACAATATATATTTAT
CTTGTAAGAAAAAGGATGTAAAATTAACTGTCACATGGATTTCTAGAGAC
AAAAATGGACAAGCTGACAAGGTAAGCAAAACAACAGATTACGACGATTG
GTTTGTGAAATCTTCTTTTGTGCACAGTTTGGAAACAAAGTGGGGCAAGT
TTAGCATAGATTTATTTGCAGATAGTAATAACACAAAATGTGAACGCTTT
TGCTCAAGGTATTTTTCTCCAGGGAGTTTCAAGGTAGATGCCTTTTCGTT
CGATTGGTCGGGAGAATTTTGCTATATGGTGCCTCCCCCCTATTTGATTC
CCAAAACAATTAAACATTTCCTAGCGTCTCAAGGTAAGACAAAAGGTGTT
TTCATTGTCCCCTTCTGGCCTTCTGCAGTATTTTGGCCTTACTTAATTAA
AGAAGAGGgggtatttaaagattttgttaagGAAGCTATCTTTTACAAAG
ATTCTAGAGTTTTTATCTCGCAAGGGGAATATAAAGGTTCAATTTTGGGA
GATTCTGATCTTGTTATACCGGTTTACGTTTTAATGATTGAAAATCACTT
TGTTTAGGTCTGATTGCAAGCGGTATGAAAAGGTATTTCAAAGTTTACGA
TCCAAAATTGGACTCTTTAGTAAATTCGGTACCAGCAGTTTTAAAACATG
CAAGATCAGAAAGCACAAATAAAAAGTACGaaggatatttcaaaaaatgg
attAACTGGTGTAAACAATTTCGGGAGATCAGTCCCATGCCCACGAAAGA
ACAATATGTCGTTTTGTTTATAGTTTCATGCGTACAACAAGATAAATCTT
TTTCTGTAATAGAGTCTACAATCATggcaataaaatattttcatgcgATT
TCGGGCCATCAATTTGTCCAGACATCGATTTTGAAATACGCTCTAGAGGC
AGCAAAAAGATTGGTTGGGAAGGAAGCATAAAGAAAAAGGAACCGATTAC
AGTAGACATGCTAAAATTGATGATTAAAACATTATCGGCCAGGAAAGACA
GTTTAAAGGCTCTGCGATTAATTACAATTTTAATAGTATCATTTACtggg
tttttgagattttcggAATGTCAGAACTTGAGAAGATCGGATATGAAGTT
TTTTACGACTCACGCCATGATTTTTATCGAGAAAAGTAAGACGGACGTTT
ACAGACATGGCCATTGGTTGTGCCTCGCTAGGTTAAAATCACATTTTTGT
CCAGTGAGAGCATTAGAGTTGTACTGTACGAAGATAAAAGAAAATTCTAA
CTCTAACAACTTTATTTTCAGAGCATTAACAACAAAACATAAACTTCGAA
AGGCTAACAAAGCAGTGTCGTATTCAACAATTCGTAACGAATTTAAAGCT
ATCGTAAATGTGTTGGGTTTTGATAAAAGGTTGTACGGTTTGCACAGTTT
AAGATCAGGTGGTGTTTCCACAGCCGCAGATCTGGGCGTGAAAGACAGAT
TATTAATGAAACATGGAAGATGGAAATCTCATAACGTTAAAAACAGGTAT
ATATCCGAAAGTATTAAAAGTTTATTATACGTATCTAGGAGTTTAGGTTT
ATGAATgtttaagtaacttttttaataaagACTCACGATAATTGTCTCAT
GCTCTTAGTCTACAGGCTTTGGTACGGCTCCTACTACATGAAAGATATCA
ATCTGTCTCGAAATCGAGATTTCtagttgttcttttttgttttgtgtcTC
AGGCCTATAATTTCGGAGAattagtaaataaatgaa Run BLAST on NCBI protein sequence of TCONS_00024789-protein >TCONS_00024789-protein ID=TCONS_00024789-protein|Name=TCONS_00024789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
VLRELLFWKFNLRELNNKSIRKYEIPDLKVFSDASATGIGAILDKNVCYR
NLKRLEIEESSTFRELLAIKYAIDSFDEMLDSKTILWHTDNISTAIIIRV
GSNKDLLQGLANNIYLSCKKKDVKLTVTWISRDKNGQADKVSKTTDYDDW
FVKSSFVHSLETKWGKFSIDLFADSNNTKCERFCSRYFSPGSFKVDAFSF
DWSGEFCYMVPPPYLIPKTIKHFLASQGKTKGVFIVPFWPSAVFWPYLIK
EEGVFKDFVKEAIFYKDSRVFISQGEYKGSILGDSDLVIPVYVLMIENHF
V Run BLAST on NCBI transcript from alignment at sc0000510:196358..199240- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024789 ID=TCONS_00024789|Name=TCONS_00024789|organism=Clytia hemisphaerica|type=transcript|length=2883bp|location=Sequence derived from alignment at sc0000510:196358..199240- (Clytia hemisphaerica)
CGTTTTGAGAGAATTATTGTTTTGGAAGTTTAATCTACGTGAGTTGAATA
ACAAATCAATAAGAAAATATGAAATTCCAGATTTAAAAGTTTTTTCAGAT
GCAAGTGCCACGGGAATTGGTGCAATTCTTGATAAAAATGTATGTTATAG
AAACTTGAAGCGGTTAGAAATAGAAGAAAGTTCTACCTTTAGAGAATTAT
TGGCTATTAAATATGCGATAGATTCTTTTGACGAAATGTTAGATAGTAAA
ACGATTTTATGGCACACAGACAATATAAGCACAGCGATCATTATCAGGGT
AGGTAGCAATAAAGATTTGTTGCAAGGTTTAGCGAACAATATATATTTAT
CTTGTAAGAAAAAGGATGTAAAATTAACTGTCACATGGATTTCTAGAGAC
AAAAATGGACAAGCTGACAAGGTAAGCAAAACAACAGATTACGACGATTG
GTTTGTGAAATCTTCTTTTGTGCACAGTTTGGAAACAAAGTGGGGCAAGT
TTAGCATAGATTTATTTGCAGATAGTAATAACACAAAATGTGAACGCTTT
TGCTCAAGGTATTTTTCTCCAGGGAGTTTCAAGGTAGATGCCTTTTCGTT
CGATTGGTCGGGAGAATTTTGCTATATGGTGCCTCCCCCCTATTTGATTC
CCAAAACAATTAAACATTTCCTAGCGTCTCAAGGTAAGACAAAAGGTGTT
TTCATTGTCCCCTTCTGGCCTTCTGCAGTATTTTGGCCTTACTTAATTAA
AGAAGAGGGGGTATTTAAAGATTTTGTTAAGGAAGCTATCTTTTACAAAG
ATTCTAGAGTTTTTATCTCGCAAGGGGAATATAAAGGTTCAATTTTGGGA
GATTCTGATCTTGTTATACCGGTTTACGTTTTAATGATTGAAAATCACTT
TGTTTAGGTCTGATTGCAAGCGGTATGAAAAGGTATTTCAAAGTTTACGA
TCCAAAATTGGACTCTTTAGTAAATTCGGTACCAGCAGTTTTAAAACATG
CAAGATCAGAAAGCACAAATAAAAAGTACGAAGGATATTTCAAAAAATGG
ATTAACTGGTGTAAACAATTTCGGGAGATCAGTCCCATGCCCACGAAAGA
ACAATATGTCGTTTTGTTTATAGTTTCATGCGTACAACAAGATAAATCTT
TTTCTGTAATAGAGTCTACAATCATGGCAATAAAATATTTTCATGCGATT
TCGGGCCATCAATTTGTCCAGACATCGATTTTGAAATACGCTCTAGAGGC
AGCAAAAAGATTGGTTGGGAAGGAAGCATAAAGAAAAAGGAACCGATTAC
AGTAGACATGCTAAAATTGATGATTAAAACATTATCGGCCAGGAAAGACA
GTTTAAAGGCTCTGCGATTAATTACAATTTTAATAGTATCATTTACTGGG
TTTTTGAGATTTTCGGAATGTCAGAACTTGAGAAGATCGGATATGAAGTT
TTTTACGACTCACGCCATGATTTTTATCGAGAAAAGTAAGACGGACGTTT
ACAGACATGGCCATTGGTTGTGCCTCGCTAGGTTAAAATCACATTTTTGT
CCAGTGAGAGCATTAGAGTTGTACTGTACGAAGATAAAAGAAAATTCTAA
CTCTAACAACTTTATTTTCAGAGCATTAACAACAAAACATAAACTTCGAA
AGGCTAACAAAGCAGTGTCGTATTCAACAATTCGTAACGAATTTAAAGCT
ATCGTAAATGTGTTGGGTTTTGATAAAAGGTTGTACGGTTTGCACAGTTT
AAGATCAGGTGGTGTTTCCACAGCCGCAGATCTGGGCGTGAAAGACAGAT
TATTAATGAAACATGGAAGATGGAAATCTCATAACGTTAAAAACAGGTAT
ATATCCGAAAGTATTAAAAGTTTATTATACGTATCTAGGAGTTTAGGTTT
ATGAATGTTTAAGTAACTTTTTTAATAAAGACTCACGATAATTGTCTCAT
GCTCTTAGTCTACAGGCTTTGGTACGGCTCCTACTACATGGGTACATGAA
AGATATCAATCTGTCTCGAAATCGAGATTTCTAGTTGTTCTTTTTTGTTT
TGTGTCTCAGGCCTATAATTTCGGAGAATTAGTAAATAAATGAATTTATT
TTCGGTTCGCAGATAAGAAAATAAGTGTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCGTGGGCTTAAGATGGT
AGATTTTTGCATTCCTCTTCACACGTCGTTCAAAGCTTCTAGAGTCGCTT
GCAACTTTACTAGCAACACGTCACAAAAGTTTTTAGCGTTGAACGTTTTT
TAGCTTTTTTGTATGTATAGATATTGACTAGTGTTTTGTATAATTATTAT
TATGTTTTATGTATTAACATAGAATTTACAGATTCAAAAATTTTCTACCT
GAACTTTAAGTACCCTTTCAAAAAGAAAGATTTGATACGACAGCTTCAAA
CAGCAGTTTTACATGTGGGTGTTGTGTTTTTCGGTATGTACAATATCTAT
GTTCGATGTCAAGTTTCAACAAGGGGTTTTTTAAGTATAGATTGTTTTTC
CAGAGTGTTATATGTTTATTCGCGTTTAAGTTTTCGTGTTTCATGTATAT
AAGTTTACAAAGTTTTCAGCTCTTCTTTTCGATCCCCCACGGTTTCTCTC
TAGCAGTTCCATTAGGATTTTTATTTTCATTAGGATGTATATTTTATGTT
TTTCGATTCTAGGCTTTGGTACGGCTCCTACTACATGAAAGATATCAATC
TGTCTCGAAATCGAGATTTCTAGTTGTTCTTTTTTGTTTTGTGTCTCAGG
CCTATAATTTCGGAGAATTAGTAAATAAATGAA Coding sequence (CDS) from alignment at sc0000510:196358..199240- >TCONS_00024789 ID=TCONS_00024789|Name=TCONS_00024789|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000510:196358..199240- (Clytia hemisphaerica)
GTTTTGAGAGAATTATTGTTTTGGAAGTTTAATCTACGTGAGTTGAATAA
CAAATCAATAAGAAAATATGAAATTCCAGATTTAAAAGTTTTTTCAGATG
CAAGTGCCACGGGAATTGGTGCAATTCTTGATAAAAATGTATGTTATAGA
AACTTGAAGCGGTTAGAAATAGAAGAAAGTTCTACCTTTAGAGAATTATT
GGCTATTAAATATGCGATAGATTCTTTTGACGAAATGTTAGATAGTAAAA
CGATTTTATGGCACACAGACAATATAAGCACAGCGATCATTATCAGGGTA
GGTAGCAATAAAGATTTGTTGCAAGGTTTAGCGAACAATATATATTTATC
TTGTAAGAAAAAGGATGTAAAATTAACTGTCACATGGATTTCTAGAGACA
AAAATGGACAAGCTGACAAGGTAAGCAAAACAACAGATTACGACGATTGG
TTTGTGAAATCTTCTTTTGTGCACAGTTTGGAAACAAAGTGGGGCAAGTT
TAGCATAGATTTATTTGCAGATAGTAATAACACAAAATGTGAACGCTTTT
GCTCAAGGTATTTTTCTCCAGGGAGTTTCAAGGTAGATGCCTTTTCGTTC
GATTGGTCGGGAGAATTTTGCTATATGGTGCCTCCCCCCTATTTGATTCC
CAAAACAATTAAACATTTCCTAGCGTCTCAAGGTAAGACAAAAGGTGTTT
TCATTGTCCCCTTCTGGCCTTCTGCAGTATTTTGGCCTTACTTAATTAAA
GAAGAGGGGGTATTTAAAGATTTTGTTAAGGAAGCTATCTTTTACAAAGA
TTCTAGAGTTTTTATCTCGCAAGGGGAATATAAAGGTTCAATTTTGGGAG
ATTCTGATCTTGTTATACCGGTTTACGTTTTAATGATTGAAAATCACTTT
GTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024789-exon-sc0000510-1575043694:197254..199240 | TCONS_00024789-exon-sc0000510-1575043694:197254..199240 | Clytia hemisphaerica | exon |
| TCONS_00024789-exon-sc0000510-1575043694:196358..196456 | TCONS_00024789-exon-sc0000510-1575043694:196358..196456 | Clytia hemisphaerica | exon |
| TCONS_00024789-exon-sc0000510-1510915933:197254..199240 | TCONS_00024789-exon-sc0000510-1510915933:197254..199240 | Clytia hemisphaerica | exon |
| TCONS_00024789-exon-sc0000510-1510915933:196358..196456 | TCONS_00024789-exon-sc0000510-1510915933:196358..196456 | Clytia hemisphaerica | exon |
| TCONS_00024789-exon-sc0000510-1491911889:197254..199240 | TCONS_00024789-exon-sc0000510-1491911889:197254..199240 | Clytia hemisphaerica | exon |
| TCONS_00024789-exon-sc0000510-1491911889:196358..196456 | TCONS_00024789-exon-sc0000510-1491911889:196358..196456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000510 | supercontig | sc0000510:196358..199240 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008593 | Dam_MeTrfase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009007 | site-specific DNA-methyltransferase (adenine-specific) activity |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0032775 | DNA methylation on adenine |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0032775 |
DNA methylation on adenine |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0009007 |
site-specific DNA-methyltransferase (adenine-specific) activity |
Blast
The following BLAST results are available for this feature:
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