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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024801 ID=TCONS_00024801|Name=TCONS_00024801|organism=Clytia hemisphaerica|type=transcript|length=1893bp
cagcgtatatttctaaagtatgaatttcacttacagaacaataatttccg
atgaataccgaaatttcattctcaacaaccgaatcttttcacctacattc
tgggggttaaaaagtgaaaaaatccaattttcaaaataacaaaatgctct
ttagaatattgttttcgcatgaaacatttctaaaatttgctgttataatt
aatccaattgaaaaaatatcaacattttactattactagatttaaagcca
taaaaccaaacctacattctgggggctataacgaaaatgggagtcaactt
caaggaccaaaaaaattggtctatctatcaaaagtaatgaaactaacccc
tgggaaaggattttgggagttcaaaatttcgttgaaaatatttaatatct
tttaaaatacaaatctacatctttcaggtctgattcaaatttcacctaca
ttctcggagTCAGGTGCtgtaaattctcaatatattttggccagGATTGT
GGATACTTTTTTAATCAACATGTATGTCACACGAGATTTTCAGTTATTCC
TATTTTTCAaatgacattttcatttttccaagttGTGTTTAAAAGAGTAT
TGGATAGTTTAGTTAGCTTAGTTACCCCTTTTTATAAATcatgattttcg
attttcgataCCAATTATGGGGTGGTGTTAAATTGGTTAAAAAGGTCGAA
AGTTGGGTTTTGGGCCTATGGATTGGTATCATGTTTAATTCCATACAGCG
TACTTTTGTCTCTaataataaatgaaaatctttgaCTATTCAGAGATTAT
CTATTTGTCAAGAGAAAGCAAAATATCCTTTATTTTCCCAGCCACTCTCA
ATGAAAAATTCCTTCAATTTGACTTCCATGCCTTCATAATTTCAACCATG
ATCGTTTAGAGAGTACCCAGGCTAGGTTTATTTTAGGCACTTCGctaatg
atattttttttccatttccagACACTAGACTCACACTCGTGTCTTTCTTT
ACAATCGTTATGTTCAACTTGGTCGTTGTGACCTTAAAGACTCTAAAATA
GAAGAAGAAGTAGAAGTCCAAATAAAATAAACCGGACAGACCAGTGATAC
CGTTCCGGGAGATCAATATGTTGGACGAAAGTGCCATGTATTTAGCTTAT
TTAACGGATGAAGGGGTTCAGTCGGTCCTGCTACCAGACGAAGACCATAA
CATATGGATGCCGAAGGAAGGATGGTCATCAAAACTTTACCTTAGCAAGC
CTGAACATAAAATCTTGACTGAGTGAGGAACAAgcgaaaaaagaagaatt
tgaaTCCGAAATAAAGAGACTACGAGAGGAGAACAAGAAGATGAAAGAAG
ATATTGAAAAACTAAAGCCGAAAGTTGATGGATTGTGGAAATTGAAAGGT
AATATCCCCACCTTTTGCAATTTCAAAAGCACATGTCATGACAAACGTAT
TCCCTCAAAAGAGATCAACTCAGCCAATTTTAAACAGTGGAAGAGTACTG
GGAATCTTGACTCCTTCCAGAGAGAAGAGTCAAGAAGTTCCAGTACTGCC
TCCAGTGGTTATAATCTGCTGAGTGACAATTTTGAGCGTGCTAATAATTG
CCGTAATAATTATCACTCATATTCCAAGAATAGCGATGGTTATTCTTGGA
ATAAGGGTGATTTTTATGACGTTGATTATTAGTCGGAATGCCTTTGTCAT
GCCATACCATATGTTTTGAATATTGTAAAGGTAGGGATCATTAGTATTTT
CGCttgtgtctttttttttttgcaccgCTGCTTTATCTCCATTTAACATT
TTCTTGATGAGATGtaatataaagaaaaagtgGGAGACAAAAACCACTTT
TTTCGCTTTTGCACTGGAgcttttttccattttgtacTTTTCG Run BLAST on NCBI protein sequence of TCONS_00024801-protein >TCONS_00024801-protein ID=TCONS_00024801-protein|Name=TCONS_00024801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKEDIEKLKPKVDGLWKLKGNIPTFCNFKSTCHDKRIPSKEINSANFKQW
KSTGNLDSFQREESRSSSTASSGYNLLSDNFERANNCRNNYHSYSKNSDG
YSWNKGDFYDVDY Run BLAST on NCBI transcript from alignment at sc0000510:105759..107651 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024801 ID=TCONS_00024801|Name=TCONS_00024801|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at sc0000510:105759..107651 (Clytia hemisphaerica)
CGAAAAgtacaaaatggaaaaaagcTCCAGTGCAAAAGCGAAAAAAGTGG
TTTTTGTCTCCcactttttctttatattaCATCTCATCAAGAAAATGTTA
AATGGAGATAAAGCAGcggtgcaaaaaaaaaaagacacaaGCGAAAATAC
TAATGATCCCTACCTTTACAATATTCAAAACATATGGTATGGCATGACAA
AGGCATTCCGACTAATAATCAACGTCATAAAAATCACCCTTATTCCAAGA
ATAACCATCGCTATTCTTGGAATATGAGTGATAATTATTACGGCAATTAT
TAGCACGCTCAAAATTGTCACTCAGCAGATTATAACCACTGGAGGCAGTA
CTGGAACTTCTTGACTCTTCTCTCTGGAAGGAGTCAAGATTCCCAGTACT
CTTCCACTGTTTAAAATTGGCTGAGTTGATCTCTTTTGAGGGAATACGTT
TGTCATGACATGTGCTTTTGAAATTGCAAAAGGTGGGGATATTACCTTTC
AATTTCCACAATCCATCAACTTTCGGCTTTAGTTTTTCAATATCTTCTTT
CATCTTCTTGTTCTCCTCTCGTAGTCTCTTTATTTCGGAttcaaattctt
cttttttcgcTTGTTCCTCACTCAGTCAAGATTTTATGTTCAGGCTTGCT
AAGGTAAAGTTTTGATGACCATCCTTCCTTCGGCATCCATATGTTATGGT
CTTCGTCTGGTAGCAGGACCGACTGAACCCCTTCATCCGTTAAATAAGCT
AAATACATGGCACTTTCGTCCAACATATTGATCTCCCGGAACGGTATCAC
TGGTCTGTCCGGTTTATTTTATTTGGACTTCTACTTCTTCTTCTATTTTA
GAGTCTTTAAGGTCACAACGACCAAGTTGAACATAACGATTGTAAAGAAA
GACACGAGTGTGAGTCTAGTGTctggaaatggaaaaaaaatatcattagC
GAAGTGCCTAAAATAAACCTAGCCTGGGTACTCTCTAAACGATCATGGTT
GAAATTATGAAGGCATGGAAGTCAAATTGAAGGAATTTTTCATTGAGAGT
GGCTGGGAAAATAAAGGATATTTTGCTTTCTCTTGACAAATAGATAATCT
CTGAATAGtcaaagattttcatttattattAGAGACAAAAGTACGCTGTA
TGGAATTAAACATGATACCAATCCATAGGCCCAAAACCCAACTTTCGACC
TTTTTAACCAATTTAACACCACCCCATAATTGGtatcgaaaatcgaaaat
catgATTTATAAAAAGGGGTAACTAAGCTAACTAAACTATCCAATACTCT
TTTAAACACaacttggaaaaatgaaaatgtcattTGAAAAATAGGAATAA
CTGAAAATCTCGTGTGACATACATGTTGATTAAAAAAGTATCCACAATCc
tggccaaaatatattgagaatttacaGCACCTGActccgagaatgtaggt
gaaatttgaatcagacctgaaagatgtagatttgtattttaaaagatatt
aaatattttcaacgaaattttgaactcccaaaatcctttcccaggggtta
gtttcattacttttgatagatagaccaatttttttggtccttgaagttga
ctcccattttcgttatagcccccagaatgtaggtttggttttatggcttt
aaatctagtaatagtaaaatgttgatattttttcaattggattaattata
acagcaaattttagaaatgtttcatgcgaaaacaatattctaaagagcat
tttgttattttgaaaattggattttttcactttttaacccccagaatgta
ggtgaaaagattcggttgttgagaatgaaatttcggtattcatcggaaat
tattgttctgtaagtgaaattcatactttagaaatatacgctg Coding sequence (CDS) from alignment at sc0000510:105759..107651 >TCONS_00024801 ID=TCONS_00024801|Name=TCONS_00024801|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000510:105759..107651 (Clytia hemisphaerica)
CTAATAATCAACGTCATAAAAATCACCCTTATTCCAAGAATAACCATCGC
TATTCTTGGAATATGAGTGATAATTATTACGGCAATTATTAGCACGCTCA
AAATTGTCACTCAGCAGATTATAACCACTGGAGGCAGTACTGGAACTTCT
TGACTCTTCTCTCTGGAAGGAGTCAAGATTCCCAGTACTCTTCCACTGTT
TAAAATTGGCTGAGTTGATCTCTTTTGAGGGAATACGTTTGTCATGACAT
GTGCTTTTGAAATTGCAAAAGGTGGGGATATTACCTTTCAATTTCCACAA
TCCATCAACTTTCGGCTTTAGTTTTTCAATATCTTCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024801-exon-sc0000510-1491911889:105759..107651 | TCONS_00024801-exon-sc0000510-1491911889:105759..107651 | Clytia hemisphaerica | exon |
| TCONS_00024801-exon-sc0000510-1510915933:105759..107651 | TCONS_00024801-exon-sc0000510-1510915933:105759..107651 | Clytia hemisphaerica | exon |
| TCONS_00024801-exon-sc0000510-1575043694:105759..107651 | TCONS_00024801-exon-sc0000510-1575043694:105759..107651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000510 | supercontig | sc0000510:105759..107651 . |
Blast
The following BLAST results are available for this feature:
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