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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024807 ID=TCONS_00024807|Name=TCONS_00024807|organism=Clytia hemisphaerica|type=transcript|length=2813bp
ACATCATCTTTCTATGAATATTTCGGCCAACTGGcctttttcaacataaa
aatggaTCTATTTGACAAGGTTTATATACTAATTCTATATACACAAGGGA
AACAATTAATTATAGGGTATCTAATCTAGCGTGTATGACATGAAAGAAAC
AAATTATAGAACGTTTCCTTATAAACTTTGTATCCTAAGTACCTGCAAAC
TCCTAAAAAGGAGTTTTTGTAATTTACtttttaattgagttttcaaaatt
tacaaaaacgtGCGAAACGTCAACAACTCCCACTAACAACCCAATGTTTA
GAATTTCAAACACCCGCCGAAGAGACCATTAGTTTTCTATGGTAAATGGT
AGAAAGGTGGCGCGACGCTATCCCAAAACGCAAAACTTTTTATCATGAAA
ATCTACAaacacggcgatttccggcattttcaaccggaaaaatttctcaa
aaatcgaactcgaccatgttttgggcattgttaatacgcatctttgagca
aaaaatcagaaaaactaatgagaaaatcttgagaaaatggcaaaaaaaca
gtttttccggaatatttccggcattttcggccggaaaaaaaatgtttttt
gaaaatcgggcttcgtcacattttaagtattgtcattttgcatcattgtg
caaaaaatcagaaaaagattatgagtcaacattgagaaaagctatttttt
cttatttggttaaagggaatttccccaaaatacgaaaatccgttttttaa
ggcgaataagcattttccgggaaaaaccactttagCCATTCTtcagagaa
tcttgccctccatttttgtacaaaaaatcagaaaaaagtaatgacaggat
tttgcacaaagtccaaaaaaacctatttttaggcaaattttggcccaaat
ttccccaaatatatttttttccgaaaatcgggctccgtcacattttgggc
attgccattttgcatctttgtgccaaaaatcagaaaaaactaataagcca
atctcgagaaaagctgttaacagacgaacggacggacgaacagacaacgg
ttaattcataggacctccaccggggtacccggaggtaggtccaaaaaggc
tAACAGACGACCGACCACCAACAAGGGGGAAGCGAGAGATGGATCGAAGA
TCCCGCACCGATACCATCACCGACACATGATGAAAAGTTTTTCCACTGGA
AAAGTGGTGGATGAGCAAAAAGGTATTTGCATTAATTTATATCATTCATT
CTCAACTGATACAACTGATTATCGTCTCCACAGCGTGAAACTATTAGTAT
TGAAATAAAACACATCAGCTTCATTCGACAATAATATATCATTCATTCTC
TAAATTTCTTCGTTCATTTCAAAAAGAGCCCTCATTTTTTTGGAAACCGA
GAgagaattaaaatattttgttagaGAGGTGTGGATCTTTTAGAAATTAA
CTTATGTAAAAAATcctaaattaaaatgaaaaacaacaagATGAGTGGAG
TGACCTAGAAgccaaaacaaggaaaatgataaaagaagagatacaacaga
caaaagattttatgaaagaGTCATCCCGTAAAACCTAAGCTGATATAACC
AAAGCACACaaggaaaatctaaaatctgttgttgcggaacaaaaagaaga
agagaagagagaaaaacgagacatcgaatcaagaagaaaaaacatcataa
tTCATGGACTCTGTGAACAAGCTGAAGACACGAAAGAAGAAGATCAAGAA
GAGGACAAAAAGGAAATCGAGGATCTGCTCAAAGATATCGGCATCCGCGA
GATCAAACCAACGCATCAACATCGTATTGGGTTCGAACatgaaaaatcga
agaaaaatcgTCCGATAAagaagtgaagaagaaaaagaaagaataatgAG
CAACCCTAAAGCCTTAAAAAAGTTTGGATATCATCTAAGCATCATTGATG
ATTTCACcatcaatgaaagaagaaaaatcaaagagatcAGAGagacaaac
aaaaactttaccaaccaaaagctgtcaatatctagCCTCAGTAGCAGCGA
CGATGAGCTGCCAACACAACATTagtcttttttaattgtaaagtagcgtt
gacttttattagcctttgttgctaccttttcgtcaacatgaaataaacta
ttacatacatacatacttTAAGTATTGTGATTGATTCTAATAAATGTCTA
AAATTCAATTTCACATATTTTGACTGctattttgttttagaaatttggaa
aattagaCAAGCATGAGTTGACATCAGTTATTGAGCCTAATGCACCATTG
AAGCGACATTTTACCGGTCAATTTTAGGATCCTTTACAATCTTTTGAACT
TTTGGTATCGTTAGACAAAAATTACAATATCCAAGAAAAATATCATCTGA
ATCTTTAATCCAACCTTTAATATGAAATTGATTATGAGtaaattacaaat
atttttgagaTTTGTGGAATTCTAGATTTTTGCAGCTTATTGCAAATTGT
ATGCCTAAGATGGcatttacatgattttttttttataagcaagtgtatgc
cccttggtcaggctcgagtatgcttaagctttcaaagcatccagacatAG
AATATGCTCCCAACTGTAAACTTTGAATTAGATTTCTCCCTCATAGATga
atttttgaatattgaatgCTTTTTTTAAAATGCTGTCCAGTCCAGTGTCA
TCTACCCACCAGCCTCGGAAAATAAACTAGTCTCTATTATTGACTGAATA
TGCTTATTattagcctgttagacgaaaaccgcttttttatcgcgatttaa
cgtcTGTTACTTT Run BLAST on NCBI transcript from alignment at sc0000510:124845..127657 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024807 ID=TCONS_00024807|Name=TCONS_00024807|organism=Clytia hemisphaerica|type=transcript|length=2813bp|location=Sequence derived from alignment at sc0000510:124845..127657 (Clytia hemisphaerica)
AAAGTAACAgacgttaaatcgcgataaaaaagcggttttcgtctaacagg
ctaatAATAAGCATATTCAGTCAATAATAGAGACTAGTTTATTTTCCGAG
GCTGGTGGGTAGATGACACTGGACTGGACAGCATTTTAAAAAAAGcattc
aatattcaaaaattcATCTATGAGGGAGAAATCTAATTCAAAGTTTACAG
TTGGGAGCATATTCTatgtctggatgctttgaaagcttaagcatactcga
gcctgaccaaggggcatacacttgcttataaaaaaaaaatcatgtaaatg
CCATCTTAGGCATACAATTTGCAATAAGCTGCAAAAATCTAGAATTCCAC
AAAtctcaaaaatatttgtaatttaCTCATAATCAATTTCATATTAAAGG
TTGGATTAAAGATTCAGATGATATTTTTCTTGGATATTGTAATTTTTGTC
TAACGATACCAAAAGTTCAAAAGATTGTAAAGGATCCTAAAATTGACCGG
TAAAATGTCGCTTCAATGGTGCATTAGGCTCAATAACTGATGTCAACTCA
TGCTTGtctaattttccaaatttctaaaacaaaatagCAGTCAAAATATG
TGAAATTGAATTTTAGACATTTATTAGAATCAATCACAATACTTAaagta
tgtatgtatgtaatagtttatttcatgttgacgaaaaggtagcaacaaag
gctaataaaagtcaacgctactttacaattaaaaaagactAATGTTGTGT
TGGCAGCTCATCGTCGCTGCTACTGAGGctagatattgacagcttttggt
tggtaaagtttttgtttgtctCTCTgatctctttgatttttcttctttca
ttgatgGTGAAATCATCAATGATGCTTAGATGATATCCAAACTTTTTTAA
GGCTTTAGGGTTGCTcattattctttctttttcttcttcacttctTTATC
GGAcgatttttcttcgatttttcatGTTCGAACCCAATACGATGTTGATG
CGTTGGTTTGATCTCGCGGATGCCGATATCTTTGAGCAGATCCTCGATTT
CCTTTTTGTCCTCTTCTTGATCTTCTTCTTTCGTGTCTTCAGCTTGTTCA
CAGAGTCCATGAattatgatgttttttcttcttgattcgatgtctcgttt
ttctctcttctcttcttctttttgttccgcaacaacagattttagatttt
ccttGTGTGCTTTGGTTATATCAGCTTAGGTTTTACGGGATGACtctttc
ataaaatcttttgtctgttgtatctcttcttttatcattttccttgtttt
ggcTTCTAGGTCACTCCACTCATcttgttgtttttcattttaatttaggA
TTTTTTACATAAGTTAATTTCTAAAAGATCCACACCTCtctaacaaaata
ttttaattctcTCTCGGTTTCCAAAAAAATGAGGGCTCTTTTTGAAATGA
ACGAAGAAATTTAGAGAATGAATGATATATTATTGTCGAATGAAGCTGAT
GTGTTTTATTTCAATACTAATAGTTTCACGCTGTGGAGACGATAATCAGT
TGTATCAGTTGAGAATGAATGATATAAATTAATGCAAATACCTTTTTGCT
CATCCACCACTTTTCCAGTGGAAAAACTTTTCATCATGTGTCGGTGATGG
TATCGGTGCGGGATCTTCGATCCATCTCTCGCTTCCCCCTTGTTGGTGGT
CGGTCGTCTGTTagcctttttggacctacctccgggtaccccggtggagg
tcctatgaattaaccgttgtctgttcgtccgtccgttcgtctgttaacag
cttttctcgagattggcttattagttttttctgatttttggcacaaagat
gcaaaatggcaatgcccaaaatgtgacggagcccgattttcggaaaaaaa
tatatttggggaaatttgggccaaaatttgcctaaaaataggtttttttg
gactttgtgcaaaatcctgtcattacttttttctgattttttgtacaaaa
atggagggcaagattctctgaAGAATGGctaaagtggtttttcccggaaa
atgcttattcgccttaaaaaacggattttcgtattttggggaaattccct
ttaaccaaataagaaaaaatagcttttctcaatgttgactcataatcttt
ttctgattttttgcacaatgatgcaaaatgacaatacttaaaatgtgacg
aagcccgattttcaaaaaacattttttttccggccgaaaatgccggaaat
attccggaaaaactgtttttttgccattttctcaagattttctcattagt
ttttctgattttttgctcaaagatgcgtattaacaatgcccaaaacatgg
tcgagttcgatttttgagaaatttttccggttgaaaatgccggaaatcgc
cgtgttTGTAGATTTTCATGATAAAAAGTTTTGCGTTTTGGGATAGCGTC
GCGCCACCTTTCTACCATTTACCATAGAAAACTAATGGTCTCTTCGGCGG
GTGTTTGAAATTCTAAACATTGGGTTGTTAGTGGGAGTTGTTGACGTTTC
GCacgtttttgtaaattttgaaaactcaattaaaaaGTAAATTACAAAAA
CTCCTTTTTAGGAGTTTGCAGGTACTTAGGATACAAAGTTTATAAGGAAA
CGTTCTATAATTTGTTTCTTTCATGTCATACACGCTAGATTAGATACCCT
ATAATTAATTGTTTCCCTTGTGTATATAGAATTAGTATATAAACCTTGTC
AAATAGAtccatttttatgttgaaaaaggCCAGTTGGCCGAAATATTCAT
AGAAAGATGATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024807-exon-sc0000510-1491911889:124845..127657 | TCONS_00024807-exon-sc0000510-1491911889:124845..127657 | Clytia hemisphaerica | exon |
| TCONS_00024807-exon-sc0000510-1510915933:124845..127657 | TCONS_00024807-exon-sc0000510-1510915933:124845..127657 | Clytia hemisphaerica | exon |
| TCONS_00024807-exon-sc0000510-1575043694:124845..127657 | TCONS_00024807-exon-sc0000510-1575043694:124845..127657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000510 | supercontig | sc0000510:124845..127657 . |
Blast
The following BLAST results are available for this feature:
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