TCONS_00024815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024815
Unique NameTCONS_00024815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024815 ID=TCONS_00024815|Name=TCONS_00024815|organism=Clytia hemisphaerica|type=transcript|length=317bp
atgGGCTGGATCACGCTTACTGAATTTCCACGTCCCATCTCCTTGGTTAT
CACCGTACCATATCCAGTAGCCCTGGAAAAATATCAAACTATGTCGCCCT
AGCTGCACAGCCGCATTGAAATTTCCCTCTTCTGGTAGCCCTTTGAATAT
GTTTGAATCTTTGATCAATACTCCCTGTTCACCTTTAACGGGGTGGTCGT
TTTTTGTAACTGAATCATATTGCCAAACCCAATATTTATTGCCTTTGAAG
AAATATGCCCTACGATTTCCAATGAGACTTAATGCAGCATCAATGCTACA
TGGTAAACCTTTCCAGC
Run BLAST on NCBI

protein sequence of TCONS_00024815-protein

>TCONS_00024815-protein ID=TCONS_00024815-protein|Name=TCONS_00024815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
WKGLPCSIDAALSLIGNRRAYFFKGNKYWVWQYDSVTKNDHPVKGEQGVL
IKDSNIFKGLPEEGNFNAAVQLGRHSLIFFQGYWIWYGDNQGDGTWKFSK
RDPAH
Run BLAST on NCBI

transcript from alignment at sc0000510:190836..191152

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024815 ID=TCONS_00024815|Name=TCONS_00024815|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at sc0000510:190836..191152 (Clytia hemisphaerica)
GCTGGAAAGGTTTACCATGTAGCATTGATGCTGCATTAAGTCTCATTGGA
AATCGTAGGGCATATTTCTTCAAAGGCAATAAATATTGGGTTTGGCAATA
TGATTCAGTTACAAAAAACGACCACCCCGTTAAAGGTGAACAGGGAGTAT
TGATCAAAGATTCAAACATATTCAAAGGGCTACCAGAAGAGGGAAATTTC
AATGCGGCTGTGCAGCTAGGGCGACATAGTTTGATATTTTTCCAGGGCTA
CTGGATATGGTACGGTGATAACCAAGGAGATGGGACGTGGAAATTCAGTA
AGCGTGATCCAGCCcat

Coding sequence (CDS) from alignment at sc0000510:190836..191152

>TCONS_00024815 ID=TCONS_00024815|Name=TCONS_00024815|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000510:190836..191152 (Clytia hemisphaerica)
TGGAAAGGTTTACCATGTAGCATTGATGCTGCATTAAGTCTCATTGGAAA
TCGTAGGGCATATTTCTTCAAAGGCAATAAATATTGGGTTTGGCAATATG
ATTCAGTTACAAAAAACGACCACCCCGTTAAAGGTGAACAGGGAGTATTG
ATCAAAGATTCAAACATATTCAAAGGGCTACCAGAAGAGGGAAATTTCAA
TGCGGCTGTGCAGCTAGGGCGACATAGTTTGATATTTTTCCAGGGCTACT
GGATATGGTACGGTGATAACCAAGGAGATGGGACGTGGAAATTCAGTAAG
CGTGATCCAGCCcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013946XLOC_013946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024815-exon-sc0000510-1491911889:190836..191152TCONS_00024815-exon-sc0000510-1491911889:190836..191152Clytia hemisphaericaexon
TCONS_00024815-exon-sc0000510-1510915933:190836..191152TCONS_00024815-exon-sc0000510-1510915933:190836..191152Clytia hemisphaericaexon
TCONS_00024815-exon-sc0000510-1575043694:190836..191152TCONS_00024815-exon-sc0000510-1575043694:190836..191152Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024815-proteinTCONS_00024815-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000510supercontigsc0000510:190836..191152 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.656214	0	0.226846	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000585Hemopexin-like_dom
IPR018487Hemopexin-like_repeat
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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