TCONS_00024823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024823
Unique NameTCONS_00024823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1102

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024823 ID=TCONS_00024823|Name=TCONS_00024823|organism=Clytia hemisphaerica|type=transcript|length=1102bp
caggccgaaaaaatgctggaaatcaccattttacagattttcaatgGGCT
TTTTCCGtatattctttgttttttttttccacgcaaaaacattattgata
acaatgcccactATCAATCAAGCGttagatgagggatgttgacattagat
cAACTTCAGAGAAAATTTGTCGTAACCATGGAAATGGATGAAAAAAGGTT
GGTTAATACATTCagtgataaaataaaaaaaatggatACTACACCCGAGA
GAAGGAAAATGAAAGCTAAACATGGTGCCAGCGGTGCATGGAAGCAAAGA
TTTCGACAGGGATGCATGGAAAGATTACGTAACAAACGTCACGATTTTGT
CAACTCACTTCGAAGCCAGAACGCTGGATCACCAGGATCGCCTTCTTCAT
CTCAAGAGTATGTTAATCAAGTCATGTTGGAAGAATGGCAACAAATGAAA
CTTGAAAGTCCTCTACTTAGTGGAAACAGCAGAGGCTTCAAAAGGAAAAA
TgaatttgaAAGTGACGACGAAGAAGATTTCCCAGAAAGCATTGAAGAAG
CTCTCGATTACTTTCAAGAAATACAAAGAGAACTACTTAGAGAAGAGGAG
CGTATGTTAGCACAATATGAAGAACTGGCAAGCTTTGATGACCAATATAT
ACATGATACAATCAATATGTTATCAACAACAGCAGTCATATGCCCTGTTT
GTCAAAAaaataatttacTGCAAAACAAACACATCATATTCTGTAAATGT
GGCATTCGAGTTGATACGCAGACTGATGCCATAGATTTAGAATATGTACG
AAATCAACTTCAAGAGTCTGTAAATGAGCACAGCTCAGCCTGTCAACATA
CACCATCTTTTCACGTCGCAGACCTGAGTGGAGTAGGAATCGAAAACCTT
GTGCTAAGCTGTCAGGTATGCGATTGTTTATCGATTATCATTTGATTTGA
ATTGATTGGCTTATATCACAGCCTCGTTTTGATTTTGCGTTGCTATCGTT
ACATCACCGTTTTATAATAGTTAAgtgttttttaatttattttgtattta
tgtaaataaaaattgaaaaaatactgGAGCATTTTATATTACCCAAGAAG
TC
Run BLAST on NCBI

transcript from alignment at sc0000511:36616..40756+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024823 ID=TCONS_00024823|Name=TCONS_00024823|organism=Clytia hemisphaerica|type=transcript|length=4141bp|location=Sequence derived from alignment at sc0000511:36616..40756+ (Clytia hemisphaerica)
caggccgaaaaaatgctggaaatcaccattttacagattttcaatgGGCT
TTTTCCGtatattctttgttttttttttccacgcaaaaacattattgata
acaatgcccactATCAATCAAGCGttagatgagggatgttgacattagat
cAACTTCAGAGAAAATTTGTCGTAACCATGGAAATGGATGAAAAAAGGGT
AGGGGTTAGCATTAAATAAAAATGGCAGTAAAAATGGCAGTAGTGCCATC
TCCTGGACTATCTACAAATTCACTGCTTcctaagaaaatttctacagtTT
CCTTGGCTCTTGATAATGACCAATTAATTAGGTCAGACCCCTAACCGTTG
CTTCTCTACTTTGTATTATTTAACTTTCATATTTCCTTCTtcacaaaatt
gattttgaaaacaaaagcaaaaatacAGTAGCCAGCCCTAAGATTAGGAA
TGAAGAATTGAGAAAAGGGCTGTTTGAAGAAAACTGGGACATGAGTGTGA
AGCTGGATCAAGAGTCCTGatacaacaaaaacaaaccaaatgtGTCTTAA
CTCTGATATTTAAACatatatcaaaaacaaaataaaaagctctaaaacag
catttATATCTAGAGgatttttttctcagttttttgggcctgggagtgat
ttttttgccaaaacgaggctaaaactttgaggAAGGCTggggacttcaaa
aatggttgggtTTGGCTGGAATTGGGCACACTTCACTTGTTCCTCGGTTG
AaaatctgggggtgtttttccatttttcaaaaagttacaattTTACATTT
GTAGTTGGTTAATACATTCagtgataaaataaaaaaaatggatACTACAC
CCGAGAGAAGGAAAATGAAAGCTAAACATGGTGCCAGCGGTGCATGGAAG
CAAAGATTTCGACAGGTATGTAAATAAAGAAAAGGTTTTTTCACCTCTAT
ATCTAAATTCAGGatacacacccttgcaatgtcTGAGACACTAATTTACT
ttagcaaaagaaaaaactagaaaattacataactttgtgaatcattgcag
tggtgcatatcataagtGAAAGCAGGGGGGTGACTTTGCTCACCTCCAAG
CTACACACCTCTCTGTATTCAAAGCTCGTTTACATCCAGCAATGAAGACC
ACCTGCTAAGTAAGAATTGATGACTAGAGAAATCTGTGATTTGGAGGTGA
TGGAGGAGGTCACCCTGTTCATGGTAAAACTATCGATTCTGTTAAGAAAT
CTGAAGAAAtagttttaaaggaaaaaacaGATTTCTGAATAAAGCTCTAT
TAGTATTACGTAATTTGTGACTGATGATaactcaaatattttttgagcca
GTGATGTAAATCATCAAGTTTACAGAAATGTCTTCAAAAATGAAGAGGGC
ATTAAATTTACTGTAAAATATCATCTAATCAGGGATGCATGGAAAGATTA
CGTAACAAACGTCACGATTTTGTCAACTCACTTCGAAGCCAGAACGCTGG
ATCACCAGGATCGCCTTCTTCATCTCAAGAGTATGTTAATCAAGTCATGT
TGGAAGAATGGCAACAAATGAAACTTGAAAGTCCTCTACTTAGTGGAAAC
AGCAGAGGCTTCAAAAGGAAAAATGTAAGGAGATAATGGCTCAAAAAACT
TCATGAAAAATGGCTCACAATTCAGTACTTAAGAGGATGATACGATTGCG
ATTTTGCATCATAGGCAAAAAGCTTTGCATTACGCAGTTTACAATTTATA
CCCTCTAAAATACTCTAATATTTTTCCTCTAAAATCTACTCTCTAATAGC
TATTCTCTTAATAATGACCCCTTCTTCATTAGGTTCCCGCTTGTCTCAGG
CTTAATTTAAACTGAGCTAGGATGCatttaaacattttcaacacaatatt
tttttcaggaatttgaAAGTGACGACGAAGAAGATTTCCCAGAAAGCATT
GAAGAAGCTCTCGATTACTTTCAAGAAATACAAAGAGAACTACTTAGAGA
AGGTAACAACATCCTCGGACAGTGATAAATAAAAAGCAATTTTCAAATTA
GCTGTCAGTAAAATTCGGCAGCTAATATGAAAGGACTTTAGCAATGGTTA
ATAAGGGTGTAGCTTTTAGTGGTGTTATGCAAAATTCCTTTAACACAGAC
AAATGTATGAGGTCTAAGTACTGAATCCTCTGCCTGGAGTACTATAAGAA
ATACCTTTATCATTAcaaatctttatatttttttgcagAGGAGCGTATGT
TAGCACAATATGAAGAACTGGCAAGCTTTGATGACCAATATATACATGAT
ACAATCAATATGTTATCAACAACAGCAGTCATATGCCCTGTTTGTCAAAA
GTAAGGTTGagagttttttactttttcacttttttcactcGAATAGACGC
AGTAGAATGAGACCAGTTTTGAAAGTGTTTCCTCGAGCTAGAATTTAANt
cccggtggatttcccttttgtgccaagtattttgtcactgattgtagttt
TAACCATTAACACTTATTATTCATCAATTTAATATGAATTCTGGTAAACA
AGTCcagattgtttttgttttattaacctgaaatatatatttctttttta
gaaataatttacTGCAAAACAAACACATCATATTCTGTAAATGTGGCATT
CGAGTTGATACGCAGGTATTCTATATACACAATTTATACTTAATCATAAA
GCCTTATCAGTTTGCTTTGttggaaatcttttttgttataaaataGAGGT
ACCCACTTCCTCCTACCTTCTTAGTACCTTACCTCTTGTTTCCTCTGGCT
GGCTACTTAAATTGATTTATATGTCCTTGTAACCCCTTGAGGTATTTTGT
CGATTTCTCCTGACAAGACCAATCAGACCCAATATTTCgagaattgaaaa
atcatacGATTTCTGCACGTGTTTCCAACAGTTTGTTAAAAAACGTTCGT
TTTCTATCCATATTTTTAGACTGATGCCATAGATTTAGAATATGTACGAA
ATCAACTTCAAGAGTCTGTAAATGAGCACAGGTTTGTTTTATCGTCAAAT
TTGACGAAAAGGTTTCAGTAATAGCTATGCTTAAAATTTTATGTAGTTAC
TGTTACATCTAGTATCACGAGGGCCAGGTTTTGTATCTTAAAAACAAACA
TTCATTATTTGTAAGCCTTGTACTTGATGCGTTGTTTAAAGATTGTCCTT
TTATTCCCATCTTCTATAGGGCTCTTCCGGAAATAGTCCATGCCCCCTGT
TGGGGATATCGAATATCCAGGGGGTTCAATGGTATCTATATATCCCGGGG
GTAGGACTTTTATAAGAGGAAAAGGATATCCATGGGGAACAAGACAAAAT
ACCTGGATATCCAGGGGGTACAGGAAAAAATGCATATGTATCCTCAACCC
TTCTATCGGCTCTATCCACTTGGGCATCCAGAAGGGTGATTCTATTTCAG
ATCGGATATCCAGGGGGAGGTGTATCTAGAAAAATGGATATCCTCGACAG
GGGGAGGAGGAAATTTCTGAAAAAGCCCAGCAACATGGCTGTTATATTGA
GACTTCTTGTCTGTTTTTATTTTAGCTCAGCCTGTCAACATACACCATCT
TTTCACGTCGCAGACCTGAGTGGAGTAGGAATCGAAAACCTTGTGCTAAG
CTGTCAGGTAATATTTTTTATGCACTGGAAAACTAGCGCCTAGAGCCGAT
AGTCTTAACTAGTATTAACTGCTAGTTTCAATACGTCACAAGAGCACCCC
GATACATTCACCTGCTTTTTAACATTGCGTAGTCTGTCTAATAGTAAACT
AGATTTTTTCAATCTTTTTTAAGGTTTTCCGATCCTCAATGGTATTTATG
ACTAAATGGGTTAATGACGCGCTTTTTAAAAATTCAATTTTTTTGCACTA
TTTTTACATTATATTTGATTAGATTTTAAAGAAAAATTCACTCGCTTTCT
TTAGGTATGCGATTGTTTATCGATTATCATTTGATTTGAATTGATTGGCT
TATATCACAGCCTCGTTTTGATTTTGCGTTGCTATCGTTACATCACCGTT
TTATAATAGTTAAgtgttttttaatttattttgtatttatgtaaataaaa
attgaaaaaatactgGAGCATTTTATATTACCCAAGAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013953XLOC_013953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024823-exon-sc0000511-1491911889:36616..36813TCONS_00024823-exon-sc0000511-1491911889:36616..36813Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:36616..36813TCONS_00024823-exon-sc0000511-1510915933:36616..36813Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:36616..36813TCONS_00024823-exon-sc0000511-1575043694:36616..36813Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:37420..37530TCONS_00024823-exon-sc0000511-1491911889:37420..37530Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:37420..37530TCONS_00024823-exon-sc0000511-1510915933:37420..37530Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:37420..37530TCONS_00024823-exon-sc0000511-1575043694:37420..37530Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:38048..38239TCONS_00024823-exon-sc0000511-1491911889:38048..38239Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:38048..38239TCONS_00024823-exon-sc0000511-1510915933:38048..38239Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:38048..38239TCONS_00024823-exon-sc0000511-1575043694:38048..38239Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:38524..38617TCONS_00024823-exon-sc0000511-1491911889:38524..38617Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:38524..38617TCONS_00024823-exon-sc0000511-1510915933:38524..38617Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:38524..38617TCONS_00024823-exon-sc0000511-1575043694:38524..38617Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:38854..38965TCONS_00024823-exon-sc0000511-1491911889:38854..38965Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:38854..38965TCONS_00024823-exon-sc0000511-1510915933:38854..38965Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:38854..38965TCONS_00024823-exon-sc0000511-1575043694:38854..38965Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:39217..39280TCONS_00024823-exon-sc0000511-1491911889:39217..39280Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:39217..39280TCONS_00024823-exon-sc0000511-1510915933:39217..39280Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:39217..39280TCONS_00024823-exon-sc0000511-1575043694:39217..39280Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:39585..39646TCONS_00024823-exon-sc0000511-1491911889:39585..39646Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:39585..39646TCONS_00024823-exon-sc0000511-1510915933:39585..39646Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:39585..39646TCONS_00024823-exon-sc0000511-1575043694:39585..39646Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:40191..40272TCONS_00024823-exon-sc0000511-1491911889:40191..40272Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:40191..40272TCONS_00024823-exon-sc0000511-1510915933:40191..40272Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:40191..40272TCONS_00024823-exon-sc0000511-1575043694:40191..40272Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1491911889:40570..40756TCONS_00024823-exon-sc0000511-1491911889:40570..40756Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1510915933:40570..40756TCONS_00024823-exon-sc0000511-1510915933:40570..40756Clytia hemisphaericaexon
TCONS_00024823-exon-sc0000511-1575043694:40570..40756TCONS_00024823-exon-sc0000511-1575043694:40570..40756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000511supercontigsc0000511:36616..40756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.5851	27.6455	67.086	89.1986	3.46237	5.72076	3.60097	3.93304	3.47651	3.36971	1.43822	3.72351	3.01283	4.37036	6.1901	2.63891	7.51621	6.91945	4.05226	2.90837	3.81778	4.58193	9.18199	7.69613	17.0407	17.8772	5.57189	4.55701	6.12202	5.36327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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