TCONS_00024869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024869
Unique NameTCONS_00024869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024869 ID=TCONS_00024869|Name=TCONS_00024869|organism=Clytia hemisphaerica|type=transcript|length=1156bp
GTTGAAGAATACGATGTTACGATAATCGGTTGGACATTCAACACAAAAAC
GAACGAACTAAAGGAAAAAAAAGCGATATTCTCAATAACAAACAAAGACT
GATCAAGGAGAGAGTGTTTGTATGAAAGCAAACTATTTTGCATGGAAATG
GTTGAGATGGTGGATAATACAGCTCAATTAGCTGACGATTCCGAAACGAA
AGCACCACGATGTGCAAGATGTCGAAATCATGGCGTCATCTCACAACTAA
AAGGTCACAAAAGAGTTTGCCCCTGGCGCGAATGTTCTTGTTCCAAATGT
ATTTTGATTTACGAACGACAGCGTTTGATGGCCGCGCAAATCGCCATACG
GAGAGAAGATGAGGAATCGGACACCAGGCTAAAATTTCATATACAATCAC
CACAGTCTAGTGACATGCCTTCTCACGATTCAATGAAATTACAATcgaac
aaaaataaagaaaGGAAACGTACACACGAAGAGGACAAAGAGACGTGCCA
AGAACGTTCCACAAAATATTCGAAGGATTACCAGAGATCTTCTTCATCCT
CAACCAATCACAAGACctctttcaaacaaaaacaacaagatGCCATGAAC
AGTGAAACGCTCATCCAAATGTTCCCCGAAATGAAACGAGATATCCTCCT
TCTCATTCTCAAAGGGTGTGATTATGACGTCAGGGGCGCTattgaacttt
tgaaaaattgtcgcCCACTTCCGCCCTCTCCTTATATGTTACCATTGACA
ACAACGCCTTCAAGAGAAGTTTACTATGAGAGGAATTGTGTTGAGTCTCA
TTGTAGAGCGTACAAACCACCTCATTGATGACTGTCGTGACTTTATCATG
CTCAACAAGACCCACAATAATACAACCCGTTCGATTGGTTGTGGGAGTAg
agaaatttcttattttcatctctaAACATAAGAAATGAGATGAAATAAAA
CTCAATCCTGCCCTaaagaatttttcattaattacaATTCCAATGTTGCG
GCAACGAAACTCTTTTAATTCCTTGATTGACCAATGAGTAATTTCAAGAT
TTATATCATGTGTTTTTGGGTTAATTTTGTATTGCGTATTAATGTTGAGG
GATGATCAAAACATCTTTACATAATTACATGTTAAATTATGCCTTTTCAA
GATGAG
Run BLAST on NCBI

protein sequence of TCONS_00024869-protein

>TCONS_00024869-protein ID=TCONS_00024869-protein|Name=TCONS_00024869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MEMVEMVDNTAQLADDSETKAPRCARCRNHGVISQLKGHKRVCPWRECSC
SKCILIYERQRLMAAQIAIRREDEESDTRLKFHIQSPQSSDMPSHDSMKL
QSNKNKERKRTHEEDKETCQERSTKYSKDYQRSSSSSTNHKTSFKQKQQD
AMNSETLIQMFPEMKRDILLLILKGCDYDVRGAIELLKNCRPLPPSPYML
PLTTTPSREVYYERNCVESHCRAYKPPH
Run BLAST on NCBI

transcript from alignment at sc0000512:175311..177440+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024869 ID=TCONS_00024869|Name=TCONS_00024869|organism=Clytia hemisphaerica|type=transcript|length=2130bp|location=Sequence derived from alignment at sc0000512:175311..177440+ (Clytia hemisphaerica)
GTTGAAGAATACGATGTTACGATAATCGGTTGGACATTCAACACAAAAAC
GAACGAACTAGTAAGAcatctttcttttgtttgactTTGATGACTCTTTC
CTTGTCATGTTAAGATTTATACACGTCATTCCTCTCTAGGGGTTTGGGTT
CGACATTTAATTAATTTCTCGCCACAGATCCTTATCGTagattttctatt
tataaaaaaagtagttGAATATATGAAAGGAAAAGTTACTTAGTATAAAG
CTCAAATTTCTCCTTGTAACATGAAGCCCGGCTTTATCTTTTCATTTTCG
TTCCGTAAGGCTCtttgttttgtcttttgtttgaaaGGAAAGCAAAGTAG
ATTGTGTGACATGATTAATATCACAGAACTGATTAAGCCCCCTATCTTTT
TAATAATAAATGTCGTTTGGTCGTTCTTTCGCTCGCCTTGTGGACGGAGA
AGGAAAAAAAAGCGATATTCTCAATAACAAACAAAGACTGATCAAGGAGA
GAGTGTTTGTATGAAAGCAAACTATTTTGCATGGAAATGGTTGAGATGGT
GGATAATACAGCTCAATTAGCTGACGATTCCGAAACGAAAGCACCACGAT
GTGCAAGATGTCGAAATCATGGCGTCATCTCACAACTAAAAGGTCACAAA
AGAGTTTGCCCCTGGCGCGAATGTTCTTGTTCCAAATGTATTTTGATTTA
CGAACGACAGCGTTTGATGGCCGCGCAAATCGCCATACGGAGAGAAGATG
AGGAATCGGACACCAGGCTAAAATTTCATATACAATCACCACAGTCTAGT
GACATGCCTTCTCACGATTCAATGAAATTACAATcgaacaaaaataaaga
aagtgaGTTGATGGTTCTCATTTTCATTTACTGAAATTATTTCACCTTCT
TCTTTATCTAATGACGAAAAACTTCTGGAAGTCCTCACGAAGAAGAAACT
TCCCAAATTTGAAGTGATACCTCTAAAGTTATTTTAAAACTCCAAGTTAT
AAAGGACAACTTTTTGCCTTGGGTCACTCAGGGTGAAGGATTGGGTGGAT
TGTATAGGTACAAAGAAAAAGTGATGTTGCTATTTAGAGTATTTATGTAC
CatggttttaaggttttatgaattttctttttgaatttgaccaCTCTAGA
ATGTCCTAAATCAACCTCCGATTTTAAATAATCAGTCGATATTTCAGGAC
GAAATAGTCTCAACAGCATTATTTTTTGACAGACAcatattaatttattt
atttggtTGACTTCAAACCAGAACATTTTAGGTGGGGTATGTGTGGattc
ttcttgtttttttcaATCAGACCATTTTCAAATAATCCAGTAGGTGATTC
TTATCCAGTGGGGTGAAAAATTGAATCGTTCAACGTTTATTGGAAAGTTG
ATTCAAATGGTGAAATCTATGGCTTTTTATTCTACAGGGAAACGTACACA
CGAAGAGGACAAAGAGACGTGCCAAGAACGTTCCACAAAATATTCGAAGG
ATTACCAGAGATCTTCTTCATCCTCAACCAATCACAAGACctctttcaaa
caaaaacaacaagatGCCATGAACAGTGAAACGCTCATCCAAATGTTCCC
CGAAATGAAACGAGATATCCTCCTTCTCATTCTCAAAGGGTGTGATTATG
ACGTCAGGGGCGCTattgaacttttgaaaaattgtcgcCCACTTCCGCCC
TCTCCTTATATGTTACCATTGACAACAACGCCTTCAAGAGAAGTTTACTA
TGAGAGGAATTGTGTTGAGTCTCATTGTAGAGCGTACAAACCACCTCATT
GATGACTGTCGTGACTTTATCATGCTCAACAAGACCCACAATAATACAAC
CCGTTCGATTGGTTGTGGGAGTAgagaaatttcttattttcatctctaAA
CATAAGAAATGAGATGAAATAAAACTCAATCCTGCCCTaaagaatttttc
attaattacaATTCCAATGTTGCGGCAACGAAACTCTTTTAATTCCTTGA
TTGACCAATGAGTAATTTCAAGATTTATATCATGTGTTTTTGGGTTAATT
TTGTATTGCGTATTAATGTTGAGGGATGATCAAAACATCTTTACATAATT
ACATGTTAAATTATGCCTTTTCAAGATGAG

Coding sequence (CDS) from alignment at sc0000512:175311..177440+

>TCONS_00024869 ID=TCONS_00024869|Name=TCONS_00024869|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0000512:175311..177440+ (Clytia hemisphaerica)
ATGGAAATGGTTGAGATGGTGGATAATACAGCTCAATTAGCTGACGATTC
CGAAACGAAAGCACCACGATGTGCAAGATGTCGAAATCATGGCGTCATCT
CACAACTAAAAGGTCACAAAAGAGTTTGCCCCTGGCGCGAATGTTCTTGT
TCCAAATGTATTTTGATTTACGAACGACAGCGTTTGATGGCCGCGCAAAT
CGCCATACGGAGAGAAGATGAGGAATCGGACACCAGGCTAAAATTTCATA
TACAATCACCACAGTCTAGTGACATGCCTTCTCACGATTCAATGAAATTA
CAATcgaacaaaaataaagaaaGGAAACGTACACACGAAGAGGACAAAGA
GACGTGCCAAGAACGTTCCACAAAATATTCGAAGGATTACCAGAGATCTT
CTTCATCCTCAACCAATCACAAGACctctttcaaacaaaaacaacaagat
GCCATGAACAGTGAAACGCTCATCCAAATGTTCCCCGAAATGAAACGAGA
TATCCTCCTTCTCATTCTCAAAGGGTGTGATTATGACGTCAGGGGCGCTa
ttgaacttttgaaaaattgtcgcCCACTTCCGCCCTCTCCTTATATGTTA
CCATTGACAACAACGCCTTCAAGAGAAGTTTACTATGAGAGGAATTGTGT
TGAGTCTCATTGTAGAGCGTACAAACCACCTCATTGAATGGAAATGGTTG
AGATGGTGGATAATACAGCTCAATTAGCTGACGATTCCGAAACGAAAGCA
CCACGATGTGCAAGATGTCGAAATCATGGCGTCATCTCACAACTAAAAGG
TCACAAAAGAGTTTGCCCCTGGCGCGAATGTTCTTGTTCCAAATGTATTT
TGATTTACGAACGACAGCGTTTGATGGCCGCGCAAATCGCCATACGGAGA
GAAGATGAGGAATCGGACACCAGGCTAAAATTTCATATACAATCACCACA
GTCTAGTGACATGCCTTCTCACGATTCAATGAAATTACAATcgaacaaaa
ataaagaaaGGAAACGTACACACGAAGAGGACAAAGAGACGTGCCAAGAA
CGTTCCACAAAATATTCGAAGGATTACCAGAGATCTTCTTCATCCTCAAC
CAATCACAAGACctctttcaaacaaaaacaacaagatGCCATGAACAGTG
AAACGCTCATCCAAATGTTCCCCGAAATGAAACGAGATATCCTCCTTCTC
ATTCTCAAAGGGTGTGATTATGACGTCAGGGGCGCTattgaacttttgaa
aaattgtcgcCCACTTCCGCCCTCTCCTTATATGTTACCATTGACAACAA
CGCCTTCAAGAGAAGTTTACTATGAGAGGAATTGTGTTGAGTCTCATTGT
AGAGCGTACAAACCACCTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013981XLOC_013981Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024869-proteinTCONS_00024869-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024869-exon-sc0000512-1491911889:175311..175370TCONS_00024869-exon-sc0000512-1491911889:175311..175370Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1510915933:175311..175370TCONS_00024869-exon-sc0000512-1510915933:175311..175370Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1575043694:175311..175370TCONS_00024869-exon-sc0000512-1575043694:175311..175370Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1491911889:175760..176162TCONS_00024869-exon-sc0000512-1491911889:175760..176162Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1510915933:175760..176162TCONS_00024869-exon-sc0000512-1510915933:175760..176162Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1575043694:175760..176162TCONS_00024869-exon-sc0000512-1575043694:175760..176162Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1491911889:176748..177440TCONS_00024869-exon-sc0000512-1491911889:176748..177440Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1510915933:176748..177440TCONS_00024869-exon-sc0000512-1510915933:176748..177440Clytia hemisphaericaexon
TCONS_00024869-exon-sc0000512-1575043694:176748..177440TCONS_00024869-exon-sc0000512-1575043694:176748..177440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:175311..177440 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132794	0.00041387	0.0578196	0	0.321472	0.094341	1.50186	1.9184	1.19056	1.76678	0	1.12046	0.591154	0.0375806	0.0831289	0.460658	16.0329	15.44	1.45182	2.28965	16.0821	16.3342	6.31817	11.5095	14.4068	13.0143	38.4894	37.5634	1.04708	0.658546
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001275DM_DNA-bd
IPR005173DMA
IPR009060UBA-like
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0005515 protein binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
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BLAST of TCONS_00024869 vs. Swiss-Prot (Human)
Match: DMRTA (Doublesex- and mab-3-related transcription factor A1 OS=Homo sapiens GN=DMRTA1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.311e-22
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:  199 KAPRCARCRNHGVISQLKGHKRVCPWRECSCSKCILIYERQRLMAAQIAIRRE--DEESDTR 378
            + P+CARCRNHGV+S LKGHKR C WR+C+C+KC LI ERQR+MAAQ+A+RR+   EES+ R
Sbjct:   93 RTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEAR 154
The following BLAST results are available for this feature:
BLAST of TCONS_00024869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMRTA6.311e-2266.13Doublesex- and mab-3-related transcription factor ... [more]
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