TCONS_00024871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024871
Unique NameTCONS_00024871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024871 ID=TCONS_00024871|Name=TCONS_00024871|organism=Clytia hemisphaerica|type=transcript|length=770bp
TGCAGTGTCGGAGAAAAATAACATGTACTAAAAATACGGAATCATAGGAA
ATAGGCTAATTATTGGGATCCCAACATCATACAGTGAAAACTCTCTGAAC
CTTTCTCTCTCTGATTTTTAAACTTTCCCCTTTACAGTATCGGGTTAAAC
GATAGCCCTGAACCTTACCCCTTTCATTTTATACTTGACATGTACTTTCA
TAAGCTCTTTACTTTCTGTTACATAAGTTTATGTCGTTATCGGTATAAAT
AGTGCCCACAAATCTGATCAACATTCATTTCTACACATTTTTAGTTTGca
tcaaaagaataaaaaaatcgtcatacaaaaaaacttacaaaatgttgaaa
agatttggaCAAAAGAAAGGTTCATTGACTTCGATCAATGGGAATGGCAT
ACGAATCGAGGTTATCGATCACAACGATTCGAAAAAATCGACCACGTTAA
GCagTGTCAGTAAACCTCGCTCTTCTCTCAACTCGATCAACAAGAAAACA
ACATCGCTCTACAATGAAGCAAGAACGCGAGCTATTCTTGAAACGCTATA
ACTGAAAtggatgtttgttttgaaattttaaccgCTGATGATCGCTTTTC
TTCCAAAATAACCTTCACGGTGACCCCCATCTTGCAGAACAGTGCATTAT
TagtgtttgtttttttcgtcttaatttattttatattttgtaaattaTCA
TTTTGTAGATATGAAAATAGATGAGTTGTATATTTTTTCTCTAGAAAgag
attttatttaaaaacatgaG
Run BLAST on NCBI

transcript from alignment at sc0000512:194246..195858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024871 ID=TCONS_00024871|Name=TCONS_00024871|organism=Clytia hemisphaerica|type=transcript|length=1613bp|location=Sequence derived from alignment at sc0000512:194246..195858+ (Clytia hemisphaerica)
TGCAGTGTCGGAGAAAAATAACATGTACTAAAAATACGGAATCATAGGAA
ATAGGCTAATTATTGGGATCCCAACATCATACAGTGAAAACTCTCTGAAC
CTTTCTCTCTCTGATTTTTAAACTTTCCCCTTTACAGTATCGGGTTAAAC
GATAGCCCTGAACCTTACCCCTTTCATTTTATACTTGACATGTACTTTCA
TAAGCTCTTTACTTTCTGTTACATAAGTTTATGTCGTTATCGGTATAAAT
AGTGCCCACAAATCTGATCAACATTCATTTCTACACATTTTTAGTTTGca
tcaaaagaataaaaaaatcgtcatacaaaaaaacttacaaaatgttgaaa
aggtgaccatttatttttttattaataaaatattttgaaatttatggtGA
TAGCCATATAATTTTGGATACTCTAATTTTAGTTTGACTTGAACTTAAAA
CCATatttatcttttaattttttcagatttggaCAAAAGAAAGGTTCATT
GACTGTAAGTATTGACTCTTTCTTAACAATTGCTAATCTCGTCTGGTCTT
GCAAATCGATTGGATGTGCCATATGGGTTTGAAATGAGACTTCAGGAGAC
TGAGGTTTTCATGATAAGTGTTCAATATACACGGTTTTCAGAATGAATTG
AGTTGATACAGGTGTGTCGCAATTCGATGAGGGTGTGTTCAAATACGTTA
CTATCGTCAACTAAATGGTTACTAAGTTAGTTTTACCCAAATTTTCAATC
AACCATTGTCTTTAGAATGCGAagaattaaaaacaaagaaaaaataaagc
aTCTGTTCATCTTCCTTTTCAGTCGATCAATGGGAATGGCATACGAATCG
AGGTTATCGATCACAACGATTCGAAAAAATCGACCACGTTAAGCGTAAGT
AGAAGACCTCAGGGTTTCGATTAATTCGTTCACGTGAAACAATCTACCAT
GTTTGTTTTTACACGCAGTGTTTTGATACGATGATACGAGGATCTTATTC
ACGCCAAGCGAGGATTATTTTCAAGCTTCCCTTTACACGTGACTTTGAGA
TATTCACTGATTACTCCACGCATGACACGTATTTACTTTAAAGGACACGG
CTCCGTAATTGGCCACATTCCTTGAAAGAAGAATcagtaggcttctgctc
attctctagcgaaaaaagtttcttataggaagtatatctatagaggtcct
GTGATTCAGACTAAAGAATCTGGTGTGCGAAGATGATCCATTCTTGGACA
AGTTTTTTTGTCTCTTAATTTCATTGcttcctttttattttctagagTGT
CAGTAAACCTCGCTCTTCTCTCAACTCGATCAACAAGAAAACAACATCGC
TCTACAATGAAGCAAGAACGCGAGCTATTCTTGAAACGCTATAACTGAAA
tggatgtttgttttgaaattttaaccgCTGATGATCGCTTTTCTTCCAAA
ATAACCTTCACGGTGACCCCCATCTTGCAGAACAGTGCATTATTagtgtt
tgtttttttcgtcttaatttattttatattttgtaaattaTCATTTTGTA
GATATGAAAATAGATGAGTTGTATATTTTTTCTCTAGAAAgagattttat
ttaaaaacatgaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013982XLOC_013982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024871-exon-sc0000512-1491911889:194246..194597TCONS_00024871-exon-sc0000512-1491911889:194246..194597Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1510915933:194246..194597TCONS_00024871-exon-sc0000512-1510915933:194246..194597Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1575043694:194246..194597TCONS_00024871-exon-sc0000512-1575043694:194246..194597Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1491911889:194722..194749TCONS_00024871-exon-sc0000512-1491911889:194722..194749Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1510915933:194722..194749TCONS_00024871-exon-sc0000512-1510915933:194722..194749Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1575043694:194722..194749TCONS_00024871-exon-sc0000512-1575043694:194722..194749Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1491911889:195068..195139TCONS_00024871-exon-sc0000512-1491911889:195068..195139Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1510915933:195068..195139TCONS_00024871-exon-sc0000512-1510915933:195068..195139Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1575043694:195068..195139TCONS_00024871-exon-sc0000512-1575043694:195068..195139Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1491911889:195541..195858TCONS_00024871-exon-sc0000512-1491911889:195541..195858Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1510915933:195541..195858TCONS_00024871-exon-sc0000512-1510915933:195541..195858Clytia hemisphaericaexon
TCONS_00024871-exon-sc0000512-1575043694:195541..195858TCONS_00024871-exon-sc0000512-1575043694:195541..195858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:194246..195858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.847879	1.41839	3.50858	3.21252	0.0852829	0.0673917	0.325221	0.304468	0.0532913	0.0660099	0.128142	0.252706	0.420591	0.262072	0.251369	0.265766	0.807061	0.389276	0.268903	0.351734	0.578312	1.18302	8.57421	8.9316	7.91742	3.65302	2.25459	1.09491	0.42115	0.214543
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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