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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024910 ID=TCONS_00024910|Name=TCONS_00024910|organism=Clytia hemisphaerica|type=transcript|length=966bp
CTTTCATTAAAAGAAGGGATGGCTCCCTTTTGAATTGCAAAGCTTTACAT
ATTTTTTACTTACGTATGTTTTtaatagaaattcaaaaaaattatttttt
acaaaatcataTTTACAAATAATATTTATCTAATGTCTACATGTATACTA
TTGTGCACCATTAGTTTTGCTGCTTTCCTCTTGCACAACTTTCTCGATCA
TTTCTGCCAAAAATTTTGGTGGATCTAAATCATCATTGGAGTCTTGTTGT
TTGTAAGGATTTCTCATCTGATTATAAGATCGTTTTTGTAAACCATACTT
TTCCTCAGATTCTTGTATCTCTCTGAAAAATTCTCCTGATTTGATTTTCT
CAATCCTTTTTCTGTCCATGTAAGGTTTACTTAAGAAGAAGACACCAGCA
CCACCTATGACTAAAGAAAGCCAGGCAGCACCAATACGAAGGGTCCATCT
TACTCTTCTCTGGTAATCAATTGGCATTCTCCGCAACTCCTCTTGAAGTG
TTTTAGGagcatgtttttcattttttaccatcttaaatgtgaaaataatt
aacataattatCTTTTGTAACCCttatacaatcatggacaaaaggtttgt
agacttctgcaatatttgcaaaatacttcaatatcaatccaaaacaagtt
cccaagaggttctgggtgctttccaaacccattcaaagctgttcaaagtc
tttcaaagtcacccactgcagtctaaccacaagggcaaaccacaagggct
tgattaaagggcttgattaactggcttacaccagtatcaaaacgctgatt
ttttgcttgtggttgcctcaaaagcaattcaaaagcaatgcaacgacttc
gaaAGTGTGTTTTTTAACTTCCCTCCTTTTTCAGAcgcattgaagagtca
ttttgctctatttctcaccatttttcactgaaatttcatttgtctacaac
cttttgtccatgattg Run BLAST on NCBI protein sequence of TCONS_00024910-protein >TCONS_00024910-protein ID=TCONS_00024910-protein|Name=TCONS_00024910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MLIIFTFKMVKNEKHAPKTLQEELRRMPIDYQRRVRWTLRIGAAWLSLVI
GGAGVFFLSKPYMDRKRIEKIKSGEFFREIQESEEKYGLQKRSYNQMRNP
YKQQDSNDDLDPPKFLAEMIEKVVQEESSKTNGAQ Run BLAST on NCBI transcript from alignment at sc0000512:130522..131487 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024910 ID=TCONS_00024910|Name=TCONS_00024910|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at sc0000512:130522..131487 (Clytia hemisphaerica)
caatcatggacaaaaggttgtagacaaatgaaatttcagtgaaaaatggt
gagaaatagagcaaaatgactcttcaatgcgTCTGAAAAAGGAGGGAAGT
TAAAAAACACACTttcgaagtcgttgcattgcttttgaattgcttttgag
gcaaccacaagcaaaaaatcagcgttttgatactggtgtaagccagttaa
tcaagccctttaatcaagcccttgtggtttgcccttgtggttagactgca
gtgggtgactttgaaagactttgaacagctttgaatgggtttggaaagca
cccagaacctcttgggaacttgttttggattgatattgaagtattttgca
aatattgcagaagtctacaaaccttttgtccatgattgtataaGGGTTAC
AAAAGataattatgttaattattttcacatttaagatggtaaaaaatgaa
aaacatgctCCTAAAACACTTCAAGAGGAGTTGCGGAGAATGCCAATTGA
TTACCAGAGAAGAGTAAGATGGACCCTTCGTATTGGTGCTGCCTGGCTTT
CTTTAGTCATAGGTGGTGCTGGTGTCTTCTTCTTAAGTAAACCTTACATG
GACAGAAAAAGGATTGAGAAAATCAAATCAGGAGAATTTTTCAGAGAGAT
ACAAGAATCTGAGGAAAAGTATGGTTTACAAAAACGATCTTATAATCAGA
TGAGAAATCCTTACAAACAACAAGACTCCAATGATGATTTAGATCCACCA
AAATTTTTGGCAGAAATGATCGAGAAAGTTGTGCAAGAGGAAAGCAGCAA
AACTAATGGTGCACAATAGTATACATGTAGACATTAGATAAATATTATTT
GTAAAtatgattttgtaaaaaataatttttttgaatttctattaAAAACA
TACGTAAGTAAAAAATATGTAAAGCTTTGCAATTCAAAAGGGAGCCATCC
CTTCTTTTAATGAAAG Coding sequence (CDS) from alignment at sc0000512:130522..131487 >TCONS_00024910 ID=TCONS_00024910|Name=TCONS_00024910|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000512:130522..131487 (Clytia hemisphaerica)
atgttaattattttcacatttaagatggtaaaaaatgaaaaacatgctCC
TAAAACACTTCAAGAGGAGTTGCGGAGAATGCCAATTGATTACCAGAGAA
GAGTAAGATGGACCCTTCGTATTGGTGCTGCCTGGCTTTCTTTAGTCATA
GGTGGTGCTGGTGTCTTCTTCTTAAGTAAACCTTACATGGACAGAAAAAG
GATTGAGAAAATCAAATCAGGAGAATTTTTCAGAGAGATACAAGAATCTG
AGGAAAAGTATGGTTTACAAAAACGATCTTATAATCAGATGAGAAATCCT
TACAAACAACAAGACTCCAATGATGATTTAGATCCACCAAAATTTTTGGC
AGAAATGATCGAGAAAGTTGTGCAAGAGGAAAGCAGCAAAACTAATGGTG
CACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024910-exon-sc0000512-1491911889:130522..131487 | TCONS_00024910-exon-sc0000512-1491911889:130522..131487 | Clytia hemisphaerica | exon |
| TCONS_00024910-exon-sc0000512-1510915933:130522..131487 | TCONS_00024910-exon-sc0000512-1510915933:130522..131487 | Clytia hemisphaerica | exon |
| TCONS_00024910-exon-sc0000512-1575043694:130522..131487 | TCONS_00024910-exon-sc0000512-1575043694:130522..131487 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000512 | supercontig | sc0000512:130522..131487 . |
Blast
The following BLAST results are available for this feature:
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