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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025010 ID=TCONS_00025010|Name=TCONS_00025010|organism=Clytia hemisphaerica|type=transcript|length=2343bp
TTTCAGTCGGAAAAAATAGTAATACACAAAATAAACGTGGTAATGGGTTG
GGATATAGATCGCTTTCCAGAAGGTGAAGTCAATCTTGAGCTCATCTGCT
GTATCTGTACATGTATATTAGAAGATCCTGTCGAATCACCATGCAGACAC
GTCTTTTGTTCACAATGTATCAAAACATGGCTATCCAACCAGAAATCTTG
TCCACATTGTCGTGCTCCAGTCCATAAACGTGATTTACAATCTGTTGTGC
CATTATTAAAGAACATCATCAGCAAGCAGAAGATTTATTGTGATAACAAG
AATCGTGGTTGTACGGATATCATTGCTTTGGAGAATCTCCAAGGACATAT
TGCGTCTTGCCAGTACGGTTTGGTCCCTTGCACCTATGAGGGTTGCCATG
TTCGCGTGATGAGAAAAGACCACAAGTCACATATAGAAGTTTGCGCAAAA
CGAACTGTGATGTGTGAGAATGGTTGTGAAATGTTTTTGACACTTGGTGA
ACAGAACAGTCACAATTGTGTACAAGCCTTACGCTCCCATTTTCaagATG
TTACAAACGAGCTTCTTGGTCGTATTGCCAAACTTGAAGAAATCGTCAAC
GATCTTGCATctaaaaatcattcaaatgGCAATTCACGTGGTGGCCTTCC
TAACAACACTAACCACCATCAACATCGCAGTGGCGGCACTGGCGGAGGTG
GGGGTGGAAATAATCGAGGTGGAGTGAACGATGAGACATACAGCTGTGTA
TCATATAATATCCCATCACCGCGTTCATACAACTCTGAATCGTCACCCAC
ACGTTTTACAGTACTCCACGAAGTCGACAATACTATTAATCTAGACAATT
ATCAACACGATAATAACTCTGACTACTCTTTGGAATCTGTCGAACCAGAT
TCTCCATTAAACAACCATCATAACACTTACATCAACCAACCACCCCGTTC
CCCGACAACGGGGACGCGCCGTAATAGCGTCAATTATGACCCAGACATGT
CTCCAGTTTACGGTGGCAATCAAACATACCCGTTACGTGAACGTGGCACC
AGGCGTGAGAATCGTGGTCACTCAACGAGTGCCCGGCATCGTTCACGATC
GCCCACTACTCATAACAGACACTCAGTCAATAATCGGCTAACTGGCAGTA
GTAGTAGAGCCAGGCGTCAACAATTACACTCAGCAAACACTACGTCTAAT
TTTGATGATGATTACGATGGATTGCGAAATTCTTCACAACATAATTTAGT
TGGTGGTGCTTCAACTGAAGATAATGACGATGGCCTCGTTTTGAGAATCG
GTGTGTCGCAAACCGTCTCGGATAGTTCCACGTCGGCGTCGTCAACTTCT
GATAGTGATACGGATTGACTTTTGTTGTTGGCTTCTTTATgatgttttat
tgtttttcaagttcaaaatgtGCAAAGTGTTGTTACTTAGTACTTTGGTT
aataggcttttccagaaagaatTTCACCCCATTTttttgaggatattgat
ttttgaaaacatcaaCCCCCCTGGTTAATCTTCTTTCTATCGAGACACTT
CACGCCCTTGAATATCCACTCTATTATGGATATATGAAAATGGAACACTT
GACTCTCTTGATATCGACTTATGAACAACAGTTTTAACTCCTTGGATATT
CGATACCTTAACCCTTACCTTACGGTGAACTCTATTTTCGGAAATAAGCT
TTAATGCATGGATGTTGTGATTCTGCTACATGTTCGCTCTTTGAAAAACA
GTGGAACTGGACAATCTTATTGTTGTGTTTAACCTCTTGATCGCTTTGGT
CATCTTATTGTTTATAATTATCATTGATTTTCGCACCCCCCTCCCCCCGA
TCGTACAGGGTGTTCACAGGGTTTACAAAGGTGGGtgtttcaaaaaatga
taaaacgATTTCTCAACTCTACACACCGTCATTCTTTTAATAAagtagaa
aagaatttttttgtaaaattctttCATAAGACCAAACTAGCTTTAACGAC
CTGACATGAAAAATCTCTGATGTCACAGAAGAAAGACTTCGTCTAAACAC
ACATAAAAACGTTCTTCGGGTATAAATGATACGatccttttttcctgggt
gatTTGTATTCCCGATTCACCAATCTCACagttaaaagtgaaaaattgaa
atctaaaatctgACCTTTTCAGTTTAACTTTAATCTCAGTTTAATTTTAC
TCCAAACTCACTTGACCTCTTTcagcttgttgttgttgtttgacaGTATA
GATTATATTTTCGTTTTGATGCATATAAATACTTTAATGAaataagattt
cgcggggactttATTTTACCGAAAATATTTTGACGAATTTGTG Run BLAST on NCBI protein sequence of TCONS_00025010-protein >TCONS_00025010-protein ID=TCONS_00025010-protein|Name=TCONS_00025010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
FQSEKIVIHKINVVMGWDIDRFPEGEVNLELICCICTCILEDPVESPCRH
VFCSQCIKTWLSNQKSCPHCRAPVHKRDLQSVVPLLKNIISKQKIYCDNK
NRGCTDIIALENLQGHIASCQYGLVPCTYEGCHVRVMRKDHKSHIEVCAK
RTVMCENGCEMFLTLGEQNSHNCVQALRSHFQDVTNELLGRIAKLEEIVN
DLASKNHSNGNSRGGLPNNTNHHQHRSGGTGGGGGGNNRGGVNDETYSCV
SYNIPSPRSYNSESSPTRFTVLHEVDNTINLDNYQHDNNSDYSLESVEPD
SPLNNHHNTYINQPPRSPTTGTRRNSVNYDPDMSPVYGGNQTYPLRERGT
RRENRGHSTSARHRSRSPTTHNRHSVNNRLTGSSSRARRQQLHSANTTSN
FDDDYDGLRNSSQHNLVGGASTEDNDDGLVLRIGVSQTVSDSSTSASSTS
DSDTD Run BLAST on NCBI transcript from alignment at sc0000515:181407..184630+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025010 ID=TCONS_00025010|Name=TCONS_00025010|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at sc0000515:181407..184630+ (Clytia hemisphaerica)
TTTCAGTCGGAAAAAATAGTAATACACAAAATAAACGTGGTAATGGGTTG
GGATATAGATCGCTTTCCAGAAGGTGAAGTCAATCTTGAGCTCATCTGCT
GTATCTGTACATGTATATTAGAAGATCCTGTCGAATCACCATGCAGACAC
GTCTTTTGTTCACAATGTATCAAAACATGGCTATCCAACCAGAAATCTTG
TCCACATTGTCGTGCTCCAGTCCATAAACGTGATTTACAATCTGTTGTGC
CATTATTAAAGAACATCATCAGCAAGCAGAAGATTTATTGTGATAACAAG
AATCGTGGTTGTACGGATATCATTGCTTTGGAGAATCTCCAAGGACATAT
TGCGTCTTGCCAGTACGGTTTGGTCCCTTGCACCTATGAGGGTTGCCATG
TTCGCGTGATGAGAAAAGACCACAAGTCACATATAGAAGTTTGCGCAAAA
CGAACTGTGATGTGTGAGAATGGTTGTGAAATGTTTTTGACACTTGGTGA
ACAGAACAGTCACAATTGTGTACAAGCCTTACGCTCCCATTTTCaaggta
ttttaaaaatgttctttcctCATGATGAGCCAGGACGGGTTGGttggtcg
gtactaaaatctcagacattgTGTCCTTTAGTGAAGTGGTGGTATACTCA
AAAAACCATggggtactaaaataccaaaaaaggtGGTATCCAGACAAAAT
TTGAGAACCTTCTAGTACCTTGGTACTAAAatatgtgatttttttttatt
ttttcagaattttcgtaTTAAAATTTCGTTCAATTATTTTTACTCTCAGT
CAAAATgtctaaaaatatcaatttgtGTAAAAAAAATGAGAAGAAAAAAT
TTGTCTTTCTATATTCTCAAAATCTAGATGACACAATGTCTTAATAACTA
ATAACTCCAGGATATAGTTGTTGTTTTCGCAATTTTTCGCTCATTAAACC
TCACAACCTGAAGCTTTCAATAAAAGTGGAATAAAATAGGATTTTGTTCG
AGTCAATTTCATTGGCGAGATCACAGAGGTTTGACGTCTTTCGTCCTGAG
CTTTTTTCGGAGACGGTATTGAAAACACAAGCGTAGAAGCACTCTTTTAA
AAAAGATACAATagacttttcataaattacgtcacgaacatcacttgcct
tgttttgaaattattgccatggtgattaactcccagcagaaTTTATTTCA
CTACTttctattcttaaaaaaatcatttaatgtctcaagggacataatca
ccatggaaattgtttgaaaacgCCAGTGAGTTTGTGACGTAATATATGAA
AGGGTCTATTGATGTAGCTTAAATCACCACGTACTCTCTCGAGAAATATT
TAATGTAGCTCTTTGATAGACCCCTCTCTAACTAAGGGTTAATAGATGTA
TTTCAATAATCTACTATTCTAATTGTAGATGTTACAAACGAGCTTCTTGG
TCGTATTGCCAAACTTGAAGAAATCGTCAACGATCTTGCATctaaaaatc
attcaaatgGCAATTCACGTGGTGGCCTTCCTAACAACACTAACCACCAT
CAACATCGCAGTGGCGGCACTGGCGGAGGTGGGGGTGGAAATAATCGAGG
TGGAGTGAACGATGAGACATACAGCTGTGTATCATATAATATCCCATCAC
CGCGTTCATACAACTCTGAATCGTCACCCACACGTTTTACAGTACTCCAC
GAAGTCGACAATACTATTAATCTAGACAATTATCAACACGATAATAACTC
TGACTACTCTTTGGAATCTGTCGAACCAGATTCTCCATTAAACAACCATC
ATAACACTTACATCAACCAACCACCCCGTTCCCCGACAACGGGGACGCGC
CGTAATAGCGTCAATTATGACCCAGACATGTCTCCAGTTTACGGTGGCAA
TCAAACATACCCGTTACGTGAACGTGGCACCAGGCGTGAGAATCGTGGTC
ACTCAACGAGTGCCCGGCATCGTTCACGATCGCCCACTACTCATAACAGA
CACTCAGTCAATAATCGGCTAACTGGCAGTAGTAGTAGAGCCAGGCGTCA
ACAATTACACTCAGCAAACACTACGTCTAATTTTGATGATGATTACGATG
GATTGCGAAATTCTTCACAACATAATTTAGTTGGTGGTGCTTCAACTGAA
GATAATGACGATGGCCTCGTTTTGAGAATCGGTGTGTCGCAAACCGTCTC
GGATAGTTCCACGTCGGCGTCGTCAACTTCTGATAGTGATACGGATTGAC
TTTTGTTGTTGGCTTCTTTATgatgttttattgtttttcaagttcaaaat
gtGCAAAGTGTTGTTACTTAGTACTTTGGTTaataggcttttccagaaag
aatTTCACCCCATTTttttgaggatattgatttttgaaaacatcaaCCCC
CCTGGTTAATCTTCTTTCTATCGAGACACTTCACGCCCTTGAATATCCAC
TCTATTATGGATATATGAAAATGGAACACTTGACTCTCTTGATATCGACT
TATGAACAACAGTTTTAACTCCTTGGATATTCGATACCTTAACCCTTACC
TTACGGTGAACTCTATTTTCGGAAATAAGCTTTAATGCATGGATGTTGTG
ATTCTGCTACATGTTCGCTCTTTGAAAAACAGTGGAACTGGACAATCTTA
TTGTTGTGTTTAACCTCTTGATCGCTTTGGTCATCTTATTGTTTATAATT
ATCATTGATTTTCGCACCCCCCTCCCCCCGATCGTACAGGGTGTTCACAG
GGTTTACAAAGGTGGGtgtttcaaaaaatgataaaacgATTTCTCAACTC
TACACACCGTCATTCTTTTAATAAagtagaaaagaatttttttgtaaaat
tctttCATAAGACCAAACTAGCTTTAACGACCTGACATGAAAAATCTCTG
ATGTCACAGAAGAAAGACTTCGTCTAAACACACATAAAAACGTTCTTCGG
GTATAAATGATACGatccttttttcctgggtgatTTGTATTCCCGATTCA
CCAATCTCACagttaaaagtgaaaaattgaaatctaaaatctgACCTTTT
CAGTTTAACTTTAATCTCAGTTTAATTTTACTCCAAACTCACTTGACCTC
TTTcagcttgttgttgttgtttgacaGTATAGATTATATTTTCGTTTTGA
TGCATATAAATACTTTAATGAaataagatttcgcggggactttATTTTAC
CGAAAATATTTTGACGAATTTGTG Coding sequence (CDS) from alignment at sc0000515:181407..184630+ >TCONS_00025010 ID=TCONS_00025010|Name=TCONS_00025010|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000515:181407..184630+ (Clytia hemisphaerica)
TTTCAGTCGGAAAAAATAGTAATACACAAAATAAACGTGGTAATGGGTTG
GGATATAGATCGCTTTCCAGAAGGTGAAGTCAATCTTGAGCTCATCTGCT
GTATCTGTACATGTATATTAGAAGATCCTGTCGAATCACCATGCAGACAC
GTCTTTTGTTCACAATGTATCAAAACATGGCTATCCAACCAGAAATCTTG
TCCACATTGTCGTGCTCCAGTCCATAAACGTGATTTACAATCTGTTGTGC
CATTATTAAAGAACATCATCAGCAAGCAGAAGATTTATTGTGATAACAAG
AATCGTGGTTGTACGGATATCATTGCTTTGGAGAATCTCCAAGGACATAT
TGCGTCTTGCCAGTACGGTTTGGTCCCTTGCACCTATGAGGGTTGCCATG
TTCGCGTGATGAGAAAAGACCACAAGTCACATATAGAAGTTTGCGCAAAA
CGAACTGTGATGTGTGAGAATGGTTGTGAAATGTTTTTGACACTTGGTGA
ACAGAACAGTCACAATTGTGTACAAGCCTTACGCTCCCATTTTCaagATG
TTACAAACGAGCTTCTTGGTCGTATTGCCAAACTTGAAGAAATCGTCAAC
GATCTTGCATctaaaaatcattcaaatgGCAATTCACGTGGTGGCCTTCC
TAACAACACTAACCACCATCAACATCGCAGTGGCGGCACTGGCGGAGGTG
GGGGTGGAAATAATCGAGGTGGAGTGAACGATGAGACATACAGCTGTGTA
TCATATAATATCCCATCACCGCGTTCATACAACTCTGAATCGTCACCCAC
ACGTTTTACAGTACTCCACGAAGTCGACAATACTATTAATCTAGACAATT
ATCAACACGATAATAACTCTGACTACTCTTTGGAATCTGTCGAACCAGAT
TCTCCATTAAACAACCATCATAACACTTACATCAACCAACCACCCCGTTC
CCCGACAACGGGGACGCGCCGTAATAGCGTCAATTATGACCCAGACATGT
CTCCAGTTTACGGTGGCAATCAAACATACCCGTTACGTGAACGTGGCACC
AGGCGTGAGAATCGTGGTCACTCAACGAGTGCCCGGCATCGTTCACGATC
GCCCACTACTCATAACAGACACTCAGTCAATAATCGGCTAACTGGCAGTA
GTAGTAGAGCCAGGCGTCAACAATTACACTCAGCAAACACTACGTCTAAT
TTTGATGATGATTACGATGGATTGCGAAATTCTTCACAACATAATTTAGT
TGGTGGTGCTTCAACTGAAGATAATGACGATGGCCTCGTTTTGAGAATCG
GTGTGTCGCAAACCGTCTCGGATAGTTCCACGTCGGCGTCGTCAACTTCT
GATAGTGATACGGATTGATTTCAGTCGGAAAAAATAGTAATACACAAAAT
AAACGTGGTAATGGGTTGGGATATAGATCGCTTTCCAGAAGGTGAAGTCA
ATCTTGAGCTCATCTGCTGTATCTGTACATGTATATTAGAAGATCCTGTC
GAATCACCATGCAGACACGTCTTTTGTTCACAATGTATCAAAACATGGCT
ATCCAACCAGAAATCTTGTCCACATTGTCGTGCTCCAGTCCATAAACGTG
ATTTACAATCTGTTGTGCCATTATTAAAGAACATCATCAGCAAGCAGAAG
ATTTATTGTGATAACAAGAATCGTGGTTGTACGGATATCATTGCTTTGGA
GAATCTCCAAGGACATATTGCGTCTTGCCAGTACGGTTTGGTCCCTTGCA
CCTATGAGGGTTGCCATGTTCGCGTGATGAGAAAAGACCACAAGTCACAT
ATAGAAGTTTGCGCAAAACGAACTGTGATGTGTGAGAATGGTTGTGAAAT
GTTTTTGACACTTGGTGAACAGAACAGTCACAATTGTGTACAAGCCTTAC
GCTCCCATTTTCaagATGTTACAAACGAGCTTCTTGGTCGTATTGCCAAA
CTTGAAGAAATCGTCAACGATCTTGCATctaaaaatcattcaaatgGCAA
TTCACGTGGTGGCCTTCCTAACAACACTAACCACCATCAACATCGCAGTG
GCGGCACTGGCGGAGGTGGGGGTGGAAATAATCGAGGTGGAGTGAACGAT
GAGACATACAGCTGTGTATCATATAATATCCCATCACCGCGTTCATACAA
CTCTGAATCGTCACCCACACGTTTTACAGTACTCCACGAAGTCGACAATA
CTATTAATCTAGACAATTATCAACACGATAATAACTCTGACTACTCTTTG
GAATCTGTCGAACCAGATTCTCCATTAAACAACCATCATAACACTTACAT
CAACCAACCACCCCGTTCCCCGACAACGGGGACGCGCCGTAATAGCGTCA
ATTATGACCCAGACATGTCTCCAGTTTACGGTGGCAATCAAACATACCCG
TTACGTGAACGTGGCACCAGGCGTGAGAATCGTGGTCACTCAACGAGTGC
CCGGCATCGTTCACGATCGCCCACTACTCATAACAGACACTCAGTCAATA
ATCGGCTAACTGGCAGTAGTAGTAGAGCCAGGCGTCAACAATTACACTCA
GCAAACACTACGTCTAATTTTGATGATGATTACGATGGATTGCGAAATTC
TTCACAACATAATTTAGTTGGTGGTGCTTCAACTGAAGATAATGACGATG
GCCTCGTTTTGAGAATCGGTGTGTCGCAAACCGTCTCGGATAGTTCCACG
TCGGCGTCGTCAACTTCTGATAGTGATACGGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025010-exon-sc0000515-1491911889:181407..181953 | TCONS_00025010-exon-sc0000515-1491911889:181407..181953 | Clytia hemisphaerica | exon |
| TCONS_00025010-exon-sc0000515-1510915933:181407..181953 | TCONS_00025010-exon-sc0000515-1510915933:181407..181953 | Clytia hemisphaerica | exon |
| TCONS_00025010-exon-sc0000515-1575043694:181407..181953 | TCONS_00025010-exon-sc0000515-1575043694:181407..181953 | Clytia hemisphaerica | exon |
| TCONS_00025010-exon-sc0000515-1491911889:182835..184630 | TCONS_00025010-exon-sc0000515-1491911889:182835..184630 | Clytia hemisphaerica | exon |
| TCONS_00025010-exon-sc0000515-1510915933:182835..184630 | TCONS_00025010-exon-sc0000515-1510915933:182835..184630 | Clytia hemisphaerica | exon |
| TCONS_00025010-exon-sc0000515-1575043694:182835..184630 | TCONS_00025010-exon-sc0000515-1575043694:182835..184630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000515 | supercontig | sc0000515:181407..184630 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00025010 vs. Swiss-Prot (Human)
Match: PZRN3 (E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.340e-26 Identity = 66/171 (38.60%), Postives = 104/171 (60.82%), Query Frame = 1
Query: 43 MGWDIDRFPEGEVNXXXXXXXXXXXXXDPVESPCRHVFCSQCIKTWLSNQKSCP-HCRAPVHKRDLQSVVPLLKNIISKQKIYCDNKNRGCTDIIALENLQGHIASCQYGLVPCTYEGCHVRVMRKDHKSHI-EVCAKRTV-MCENGCEMFLTLGEQNS--HNCVQALRSH 540
MG+++DRF +G+V+ +L C +C +LEDP+ +PC HVFC+ C+ W+ + SCP CR + ++L V+PL K +I K I C RGC ++ L+ L H+ C + C + GC ++R+D ++H+ + C R V C+ GC + LT GEQ + H C +ALR+H
Sbjct: 1 MGFELDRF-DGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVLPL-KRLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQVLLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAH 169
The following BLAST results are available for this feature:
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