TCONS_00025013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025013
Unique NameTCONS_00025013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025013 ID=TCONS_00025013|Name=TCONS_00025013|organism=Clytia hemisphaerica|type=transcript|length=1278bp
gaaaaatcgaACATTTATTATCTTGCTTaataataaacattttttttagg
aatttcttctaaaatttcagttttttaaaatttatgaattAATTTTTGTA
ATAATATTAAATGACTTAAATTGATTGAGTTGATAGCTGTATTAATCAGG
AGGAAGTTCTTGACTGGGGTTTGAAAAATATGgattaaatataaaaaaga
aattttctggTTGTGATGATGCGTTTGGAAGCAgtttttcaatgttttgt
ttGTGTGTTTTTGATATTGAACTATGATCTACTGTTAGTAGAGGCTGAAT
TTCAATCGTCTAATCTCATTCAAGTTGTGGCAGAAAAAGATGATTGTTTG
TACGCTCACAATTTCCTACGCCGCATCCACCGAGCACCCGCTTTTACATG
GGACGAAGATTTAGCTAACAAAGCAAAAAACTGGACGTCATACCTAGCGT
CTATAGGAGAGATTAAACATAGCAACCCTCGTTTCCAGTATCGCGAGAAT
ATCCACCATTATTGGGGTGGTAGTGAAGGATACGACATCGTTTCCGCTAT
CCGAGCTTGGTATGGTACGGTTCGCTTGTACGATTTCAACAACAATAAAA
TATCCAATCCGATGTCTTTGATGTTCGCCATTATGATGTGGGATGAAACC
ACGCGCATCGGTTGTGCAATCTCACGGAACCGAAAAGATAACGAAGGTTT
TGTGGTTGTGATGTACGCCCCGGGCGTTATGAACCATGGGGCGGATAATT
ATAAACGACATCTACACCGCCCGATAAATCTTTCGGATAGAGACTTTATT
GATTCAAAACAAATACGTCTTCCGACATTTGAAGAATTAAAACGCCCTGG
TGACGATCCAGATGATTTGCATTGGTTGACTGAACCGCTTTATGGTGTGT
CCATGAAAAATACAAGCAGGATCACATTGCATTAAAAACATTGACATTTT
GGACGTGAATGATCTTAAAATTTGCCATTGTTGTTTACATGTTGTTTTTG
ttcataagaacatcaaaattttcatccagtatttttgaccattttcctaa
gaaattaggtgtccacaaagctttaaaatgttcttaacttgttaacattt
tggctatcgaagccttatgttcttatataatttgttcttataaaaataaa
agtatatTAGATTGCCTACAGTAcactcctgtgtcacagaccaggTGGGA
CCCCCACCACACTGAAAATCTTTAGGGGTTTCGATAGAAATTGTTATCTT
TACCGTGGATGAAAAAGTTCCATCGGGG
Run BLAST on NCBI

transcript from alignment at sc0000515:206010..210521+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025013 ID=TCONS_00025013|Name=TCONS_00025013|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at sc0000515:206010..210521+ (Clytia hemisphaerica)
gaaaaatcgaACATTTATTATCTTGCTTaataataaacattttttttagg
aatttcttctaaaatttcagttttttaaaatttatgaattAATTTTTGTA
ATAATATTAAATGACTTAAATTGATTGAGTTGATAGCTGTATTAATCAGG
AGGAAGTTCTTGACTGGGGTTTGAAAAATATGgattaaatataaaaaaga
aattttctggTTGTGATGATGCGTTTGGAAGCAgtttttcaatgttttgt
ttGTGTGTTTTTGATATTGAACTATGATCTACTGTTAGTAGAGGCTGGTG
GGTGTTtttccattgagtttcaagcccgaagggctagaggcaaaaattta
acccttctcagacaagagaaattgaagccacctATTTCCCATTCAAAACG
CGCATaaaacgcgccgtaatcatgacgaagGATTGTATCCatcggttcct
ttgttttggaggactacattttttgaaatctagcgatagattttagtttc
aatctggcgtttgtgtaaaaactacgcgcgggcgttctgaatgggaaata
agtggtttcatttcccatccaggagtctcgcctctagcccttcgggcttg
aaactcaatgcgtTTTTCTAATAAGGATTCGACTCAtcattatattttat
atttcaaaGTATTTAAAATTAAGCCCATGTCATCAAGGGGGCATGGTCCC
CATTACTTTTTCCAGATAAGAAGTTATTTCACGACTTATACTTTTAAAAG
CTTCATATTTAGTAAATTGCTAAAGTTCTGGTCCCTACACTTTCCAGATC
ATGGTGCGGACCTATCTATTTTAATAAAAGATCTTTGTGCTCTAGTGACT
AGTTAAAACATAACATTGCAACGGcatcaattcaattttcattattCGCT
TCCCACTTTGTTTATGATTTCAGCAGAATTTCAATCGTCTAATCTCATTC
AAGTTGTGGCAGAAAAAGGTAAAAGCCTAGAACTTTGTGTTCTTAACTTC
AGTGGTggatttgataaattttaaataCTGAcgcaggttgcaaaattaaa
gtctgaagacaattCACGCTTTTACCCGTAATTTTTATGTGTTTGTTACA
TGACCTTTATTACTGATTGGTtatcgaatttattgacactaataaagtta
tcagctgtaagttgtaaagcaagtaacatgggaataaaatcacgtgaact
tttccGAGTAATCACACATGATTTGACTGCATTATTAATATAATTTTGCA
ATCCGTGTATTTAATGATTTTATATCTCAATAGTAGTTTATCGGCTTTGT
TTTTACCACACACTGACTGATAAAACCCACCAGTGTACTGATGTTAAAAC
GGATCATCTTTTTCCACTAGATGATTGTTTGTACGCTCACAATTTCCTAC
GCCGCATCCACCGAGCACCCGCTTTTACATGGGACGAAGATTTAGCTAAC
AAAGCAAAAAACTGGACGTCATACCTAGCGTCTATAGGAGAGATTAAACA
TAGCAACCCTCGTTTCCAGTATCGCGAGAATATCCACCATTATTGGGGTG
GTAGTGAAGGATACGACATCGTTTCCGCTATCCGAGCTTGGTAAGtaata
ttttcagaaatttataATTCAGAtgagattgggcttttccagaaagaaac
tgtataccccctgttgaggaggttcaTCCCTACGTGGCTTGAAATGCTGT
Aaacccctggaattccaggcaatttcaggtttaaacccctctggaattct
gaattttagtaggatttaaaaagctacccccatggaattccagttatttt
tgacagcttTTTGTATCTCCTTATGGAGAATTCCCCCACATATCAAACTA
AGTTACCCCctttggaacggaaatggactaGATACATTTCCAAGAAAAGG
GATACAATTATTTTTCCTCTGTTTTTATCCAGTTTACCAACTAAGAATAA
AActtttagtagggggaaatttgttcgtttttttgaggtcgctcgacttt
tttagtcaaagcacttgttatacatttttggaaagctaaggggtagggga
gtcaaaataatttgggtgccaattttttttcggacactttggtgtgattt
tcggacaaatacgacggtctcaggctaaaatcatagggtgaaaaattaat
gaaaattttagcttgagaaaacggagacctgttgtatatttgtggaaagc
tctcaaaaaatcaagattagtgatatattgcgagtataggtgatttcttt
acctaactcgagatattaatccttaaaaacagtgtttttcagNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncccaagttattttgattcccctaccccttagctttccaaaaatgtataa
caagtgctttgactaaaaaaatcgagcgattttacaaatttccccctact
atttgTTAAAAAGTGTTAAAGCCATGAAATATATAAAGGTGTGAAGAAAA
TTGAACTACAAGAACTTCTTCAAACAGCTTGAAAATGTATTCGCAAAAGC
TAGGTTACTGGCATCCTCTAATGGATTTGTGGTCCttcccattgagtttc
aagcccgaagggctagaggtcaatctccttggtaggatttgaagccaaca
aatcctaccaaagttgcgcggccttgagcgacccgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCAATccgtcataaaaaatacggcgcatattttaaggcttcact
ttttcttgcctaagaaaggttaaagattgacctctagcccttcgggcttg
aaactcaattgGTCCTTCCTTGTATACTCCTCGTATGGTTTTGTAAAAGA
TTGCGATTCAGATTACGCGAACGTAGACTACAATCACTCGCTACGGCTCC
GCGTTTCGCTTCTAAACGAAATAAAGCCATTCTATAGGTTAGATTAAATT
CTTaagtcacttctaaccaatacaATAGCTTAATTTCGTCTCGGAGCAAA
ATGAAACCGGATACGGTTGGAATCTACagtatttcattttatttttctcg
tTTCCTTAAGGTATGGTACGGTTCGCTTGTACGATTTCAACAACAATAAA
ATATCCAATCCGATGTCTTTGATGTTCGCCATTATGATGTGGGATGAAAC
CACGCGCATCGGTTGTGCAATCTCACGGAACCGAAAAGATAACGAAGGTT
TTGTGGTTGTGATGTACGCCCCGGGCGTTATGAACCATGGGGCGGATAAT
TATAAACGACATCTACACCGCCCGATAAATCTTTCGGATAGAGACTTTAG
TAAgtcgattttttaacaagtatgTTTGAGCCAAGGCTCAAAAGTCGACC
CTTTGACTCGCCCTATGAGAGACTTTAGGGTAAATTACGACAATGTTTTA
ATGACACTGTGGGAGGCTTTTTTTCACCTTCACCACACTACGAGAATTCA
TAAACCTCTAGTTTTATTCTTTTCCTTTTCAGTTGATTCAAAACAAATAC
GTCTTCCGACATTTGAAGAATTAAAACGCCCTGGTGACGATCCAGATGAT
TTGCATTGGTTGACTGAACCGCTTTATGGTGTGTCCATGAAAAATACAAG
CAGGATCACATTGCATTAAAAACATTGACATTTTGGACGTGAATGATCTT
AAAATTTGCCATTGTTGTTTACATGTTGTTTTTGttcataagaacatcaa
aattttcatccagtatttttgaccattttcctaagaaattaggtgtccac
aaagctttaaaatgttcttaacttgttaacattttggctatcgaagcctt
atgttcttatataatttgttcttataaaaataaaagtatatTAGATTGCC
TACAGTAcactcctgtgtcacagaccaggTGGGACCCCCACCACACTGAA
AATCTTTAGGGGTTTCGATAGAAATTGTTATCTTTACCGTGGATGAAAAA
GTTCCATCGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014061XLOC_014061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025013-exon-sc0000515-1491911889:206010..206306TCONS_00025013-exon-sc0000515-1491911889:206010..206306Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1510915933:206010..206306TCONS_00025013-exon-sc0000515-1510915933:206010..206306Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1575043694:206010..206306TCONS_00025013-exon-sc0000515-1575043694:206010..206306Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1491911889:206936..206977TCONS_00025013-exon-sc0000515-1491911889:206936..206977Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1510915933:206936..206977TCONS_00025013-exon-sc0000515-1510915933:206936..206977Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1575043694:206936..206977TCONS_00025013-exon-sc0000515-1575043694:206936..206977Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1491911889:207380..207599TCONS_00025013-exon-sc0000515-1491911889:207380..207599Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1510915933:207380..207599TCONS_00025013-exon-sc0000515-1510915933:207380..207599Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1575043694:207380..207599TCONS_00025013-exon-sc0000515-1575043694:207380..207599Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1491911889:209620..209858TCONS_00025013-exon-sc0000515-1491911889:209620..209858Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1510915933:209620..209858TCONS_00025013-exon-sc0000515-1510915933:209620..209858Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1575043694:209620..209858TCONS_00025013-exon-sc0000515-1575043694:209620..209858Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1491911889:210042..210521TCONS_00025013-exon-sc0000515-1491911889:210042..210521Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1510915933:210042..210521TCONS_00025013-exon-sc0000515-1510915933:210042..210521Clytia hemisphaericaexon
TCONS_00025013-exon-sc0000515-1575043694:210042..210521TCONS_00025013-exon-sc0000515-1575043694:210042..210521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000515supercontigsc0000515:206010..210521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.355982	0.377464	0.110364	0.214026	1.07413	0	5.26724	9.88261	1.9592	2.00423	9.87561	10.9856	8.8158	8.30425	7.05466	15.4343	5.79925	7.10143	0.0341936	0.0721468	4.59362	5.05998	4.80359	4.14363	0.881926	2.62606	0	0	0.0359489	0.0722451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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