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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025014 ID=TCONS_00025014|Name=TCONS_00025014|organism=Clytia hemisphaerica|type=transcript|length=1281bp
gaaaaatcgaACATTTATTATCTTGCTTaataataaacattttttttagg
aatttcttctaaaatttcagttttttaaaatttatgaattAATTTTTGTA
ATAATATTAAATGACTTAAATTGATTGAGTTGATAGCTGTATTAATCAGG
AGGAAGTTCTTGACTGGGGTTTGAAAAATATGgattaaatataaaaaaga
aattttctggTTGTGATGATGCGTTTGGAAGCAgtttttcaatgttttgt
ttGTGTGTTTTTGATATTGAACTATGATCTACTGTTAGTAGAGGCTGCAG
AATTTCAATCGTCTAATCTCATTCAAGTTGTGGCAGAAAAAGATGATTGT
TTGTACGCTCACAATTTCCTACGCCGCATCCACCGAGCACCCGCTTTTAC
ATGGGACGAAGATTTAGCTAACAAAGCAAAAAACTGGACGTCATACCTAG
CGTCTATAGGAGAGATTAAACATAGCAACCCTCGTTTCCAGTATCGCGAG
AATATCCACCATTATTGGGGTGGTAGTGAAGGATACGACATCGTTTCCGC
TATCCGAGCTTGGTATGGTACGGTTCGCTTGTACGATTTCAACAACAATA
AAATATCCAATCCGATGTCTTTGATGTTCGCCATTATGATGTGGGATGAA
ACCACGCGCATCGGTTGTGCAATCTCACGGAACCGAAAAGATAACGAAGG
TTTTGTGGTTGTGATGTACGCCCCGGGCGTTATGAACCATGGGGCGGATA
ATTATAAACGACATCTACACCGCCCGATAAATCTTTCGGATAGAGACTTT
ATTGATTCAAAACAAATACGTCTTCCGACATTTGAAGAATTAAAACGCCC
TGGTGACGATCCAGATGATTTGCATTGGTTGACTGAACCGCTTTATGGTG
TGTCCATGAAAAATACAAGCAGGATCACATTGCATTAAAAACATTGACAT
TTTGGACGTGAATGATCTTAAAATTTGCCATTGTTGTTTACATGTTGTTT
TTGttcataagaacatcaaaattttcatccagtatttttgaccattttcc
taagaaattaggtgtccacaaagctttaaaatgttcttaacttgttaaca
ttttggctatcgaagccttatgttcttatataatttgttcttataaaaat
aaaagtatatTAGATTGCCTACAGTAcactcctgtgtcacagaccaggTG
GGACCCCCACCACACTGAAAATCTTTAGGGGTTTCGATAGAAATTGTTAT
CTTTACCGTGGATGAAAAAGTTCCATCGGGG Run BLAST on NCBI protein sequence of TCONS_00025014-protein >TCONS_00025014-protein ID=TCONS_00025014-protein|Name=TCONS_00025014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MMRLEAVFQCFVCVFLILNYDLLLVEAAEFQSSNLIQVVAEKDDCLYAHN
FLRRIHRAPAFTWDEDLANKAKNWTSYLASIGEIKHSNPRFQYRENIHHY
WGGSEGYDIVSAIRAWYGTVRLYDFNNNKISNPMSLMFAIMMWDETTRIG
CAISRNRKDNEGFVVVMYAPGVMNHGADNYKRHLHRPINLSDRDFIDSKQ
IRLPTFEELKRPGDDPDDLHWLTEPLYGVSMKNTSRITLH Run BLAST on NCBI transcript from alignment at sc0000515:206010..210521+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025014 ID=TCONS_00025014|Name=TCONS_00025014|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at sc0000515:206010..210521+ (Clytia hemisphaerica)
gaaaaatcgaACATTTATTATCTTGCTTaataataaacattttttttagg
aatttcttctaaaatttcagttttttaaaatttatgaattAATTTTTGTA
ATAATATTAAATGACTTAAATTGATTGAGTTGATAGCTGTATTAATCAGG
AGGAAGTTCTTGACTGGGGTTTGAAAAATATGgattaaatataaaaaaga
aattttctggTTGTGATGATGCGTTTGGAAGCAgtttttcaatgttttgt
ttGTGTGTTTTTGATATTGAACTATGATCTACTGTTAGTAGAGGCTGGTG
GGTGTTtttccattgagtttcaagcccgaagggctagaggcaaaaattta
acccttctcagacaagagaaattgaagccacctATTTCCCATTCAAAACG
CGCATaaaacgcgccgtaatcatgacgaagGATTGTATCCatcggttcct
ttgttttggaggactacattttttgaaatctagcgatagattttagtttc
aatctggcgtttgtgtaaaaactacgcgcgggcgttctgaatgggaaata
agtggtttcatttcccatccaggagtctcgcctctagcccttcgggcttg
aaactcaatgcgtTTTTCTAATAAGGATTCGACTCAtcattatattttat
atttcaaaGTATTTAAAATTAAGCCCATGTCATCAAGGGGGCATGGTCCC
CATTACTTTTTCCAGATAAGAAGTTATTTCACGACTTATACTTTTAAAAG
CTTCATATTTAGTAAATTGCTAAAGTTCTGGTCCCTACACTTTCCAGATC
ATGGTGCGGACCTATCTATTTTAATAAAAGATCTTTGTGCTCTAGTGACT
AGTTAAAACATAACATTGCAACGGcatcaattcaattttcattattCGCT
TCCCACTTTGTTTATGATTTCAGCAGAATTTCAATCGTCTAATCTCATTC
AAGTTGTGGCAGAAAAAGGTAAAAGCCTAGAACTTTGTGTTCTTAACTTC
AGTGGTggatttgataaattttaaataCTGAcgcaggttgcaaaattaaa
gtctgaagacaattCACGCTTTTACCCGTAATTTTTATGTGTTTGTTACA
TGACCTTTATTACTGATTGGTtatcgaatttattgacactaataaagtta
tcagctgtaagttgtaaagcaagtaacatgggaataaaatcacgtgaact
tttccGAGTAATCACACATGATTTGACTGCATTATTAATATAATTTTGCA
ATCCGTGTATTTAATGATTTTATATCTCAATAGTAGTTTATCGGCTTTGT
TTTTACCACACACTGACTGATAAAACCCACCAGTGTACTGATGTTAAAAC
GGATCATCTTTTTCCACTAGATGATTGTTTGTACGCTCACAATTTCCTAC
GCCGCATCCACCGAGCACCCGCTTTTACATGGGACGAAGATTTAGCTAAC
AAAGCAAAAAACTGGACGTCATACCTAGCGTCTATAGGAGAGATTAAACA
TAGCAACCCTCGTTTCCAGTATCGCGAGAATATCCACCATTATTGGGGTG
GTAGTGAAGGATACGACATCGTTTCCGCTATCCGAGCTTGGTAAGtaata
ttttcagaaatttataATTCAGAtgagattgggcttttccagaaagaaac
tgtataccccctgttgaggaggttcaTCCCTACGTGGCTTGAAATGCTGT
Aaacccctggaattccaggcaatttcaggtttaaacccctctggaattct
gaattttagtaggatttaaaaagctacccccatggaattccagttatttt
tgacagcttTTTGTATCTCCTTATGGAGAATTCCCCCACATATCAAACTA
AGTTACCCCctttggaacggaaatggactaGATACATTTCCAAGAAAAGG
GATACAATTATTTTTCCTCTGTTTTTATCCAGTTTACCAACTAAGAATAA
AActtttagtagggggaaatttgttcgtttttttgaggtcgctcgacttt
tttagtcaaagcacttgttatacatttttggaaagctaaggggtagggga
gtcaaaataatttgggtgccaattttttttcggacactttggtgtgattt
tcggacaaatacgacggtctcaggctaaaatcatagggtgaaaaattaat
gaaaattttagcttgagaaaacggagacctgttgtatatttgtggaaagc
tctcaaaaaatcaagattagtgatatattgcgagtataggtgatttcttt
acctaactcgagatattaatccttaaaaacagtgtttttcagNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncccaagttattttgattcccctaccccttagctttccaaaaatgtataa
caagtgctttgactaaaaaaatcgagcgattttacaaatttccccctact
atttgTTAAAAAGTGTTAAAGCCATGAAATATATAAAGGTGTGAAGAAAA
TTGAACTACAAGAACTTCTTCAAACAGCTTGAAAATGTATTCGCAAAAGC
TAGGTTACTGGCATCCTCTAATGGATTTGTGGTCCttcccattgagtttc
aagcccgaagggctagaggtcaatctccttggtaggatttgaagccaaca
aatcctaccaaagttgcgcggccttgagcgacccgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCAATccgtcataaaaaatacggcgcatattttaaggcttcact
ttttcttgcctaagaaaggttaaagattgacctctagcccttcgggcttg
aaactcaattgGTCCTTCCTTGTATACTCCTCGTATGGTTTTGTAAAAGA
TTGCGATTCAGATTACGCGAACGTAGACTACAATCACTCGCTACGGCTCC
GCGTTTCGCTTCTAAACGAAATAAAGCCATTCTATAGGTTAGATTAAATT
CTTaagtcacttctaaccaatacaATAGCTTAATTTCGTCTCGGAGCAAA
ATGAAACCGGATACGGTTGGAATCTACagtatttcattttatttttctcg
tTTCCTTAAGGTATGGTACGGTTCGCTTGTACGATTTCAACAACAATAAA
ATATCCAATCCGATGTCTTTGATGTTCGCCATTATGATGTGGGATGAAAC
CACGCGCATCGGTTGTGCAATCTCACGGAACCGAAAAGATAACGAAGGTT
TTGTGGTTGTGATGTACGCCCCGGGCGTTATGAACCATGGGGCGGATAAT
TATAAACGACATCTACACCGCCCGATAAATCTTTCGGATAGAGACTTTAG
TAAgtcgattttttaacaagtatgTTTGAGCCAAGGCTCAAAAGTCGACC
CTTTGACTCGCCCTATGAGAGACTTTAGGGTAAATTACGACAATGTTTTA
ATGACACTGTGGGAGGCTTTTTTTCACCTTCACCACACTACGAGAATTCA
TAAACCTCTAGTTTTATTCTTTTCCTTTTCAGTTGATTCAAAACAAATAC
GTCTTCCGACATTTGAAGAATTAAAACGCCCTGGTGACGATCCAGATGAT
TTGCATTGGTTGACTGAACCGCTTTATGGTGTGTCCATGAAAAATACAAG
CAGGATCACATTGCATTAAAAACATTGACATTTTGGACGTGAATGATCTT
AAAATTTGCCATTGTTGTTTACATGTTGTTTTTGttcataagaacatcaa
aattttcatccagtatttttgaccattttcctaagaaattaggtgtccac
aaagctttaaaatgttcttaacttgttaacattttggctatcgaagcctt
atgttcttatataatttgttcttataaaaataaaagtatatTAGATTGCC
TACAGTAcactcctgtgtcacagaccaggTGGGACCCCCACCACACTGAA
AATCTTTAGGGGTTTCGATAGAAATTGTTATCTTTACCGTGGATGAAAAA
GTTCCATCGGGG Coding sequence (CDS) from alignment at sc0000515:206010..210521+ >TCONS_00025014 ID=TCONS_00025014|Name=TCONS_00025014|organism=Clytia hemisphaerica|type=CDS|length=3615bp|location=Sequence derived from alignment at sc0000515:206010..210521+ (Clytia hemisphaerica)
ATGATGCGTTTGGAAGCAgtttttcaatgttttgtttGTGTGTTTTTGAT
ATTGAACTATGATCTACTGTTAGTAGAGGCTGCAGAATTTCAATCGTCTA
ATCTCATTCAAGTTGTGGCAGAAAAAGATGATTGTTTGTACGCTCACAAT
TTCCTACGCCGCATCCACCGAGCACCCGCTTTTACATGGGACGAAGATTT
AGCTAACAAAGCAAAAAACTGGACGTCATACCTAGCGTCTATAGGAGAGA
TTAAACATAGCAACCCTCGTTTCCAGTATCGCGAGAATATCCACCATTAT
TGGGGTGGTAGTGAAGGATACGACATCGTTTCCGCTATCCGAGCTTGGTA
TGGTACGGTTCGCTTGTACGATTTCAACAACAATAAAATATCCAATCCGA
TGTCTTTGATGTTCGCCATTATGATGTGGGATGAAACCACGCGCATCGGT
TGTGCAATCTCACGGAACCGAAAAGATAACGAAGGTTTTGTGGTTGTGAT
GTACGCCCCGGGCGTTATGAACCATGGGGCGGATAATTATAAACGACATC
TACACCGCCCGATAAATCTTTCGGATAGAGACTTTATTGATTCAAAACAA
ATACGTCTTCCGACATTTGAAGAATTAAAACGCCCTGGTGACGATCCAGA
TGATTTGCATTGGTTGACTGAACCGCTTTATGGTGTGTCCATGAAAAATA
CAAGCAGGATCACATTGCATTAAATGATGCGTTTGGAAGCAgtttttcaa
tgttttgtttGTGTGTTTTTGATATTGAACTATGATCTACTGTTAGTAGA
GGCTGCAGAATTTCAATCGTCTAATCTCATTCAAGTTGTGGCAGAAAAAG
ATGATTGTTTGTACGCTCACAATTTCCTACGCCGCATCCACCGAGCACCC
GCTTTTACATGGGACGAAGATTTAGCTAACAAAGCAAAAAACTGGACGTC
ATACCTAGCGTCTATAGGAGAGATTAAACATAGCAACCCTCGTTTCCAGT
ATCGCGAGAATATCCACCATTATTGGGGTGGTAGTGAAGGATACGACATC
GTTTCCGCTATCCGAGCTTGGTATGGTACGGTTCGCTTGTACGATTTCAA
CAACAATAAAATATCCAATCCGATGTCTTTGATGTTCGCCATTATGATGT
GGGATGAAACCACGCGCATCGGTTGTGCAATCTCACGGAACCGAAAAGAT
AACGAAGGTTTTGTGGTTGTGATGTACGCCCCGGGCGTTATGAACCATGG
GGCGGATAATTATAAACGACATCTACACCGCCCGATAAATCTTTCGGATA
GAGACTTTATTGATTCAAAACAAATACGTCTTCCGACATTTGAAGAATTA
AAACGCCCTGGTGACGATCCAGATGATTTGCATTGGTTGACTGAACCGCT
TTATGGTGTGTCCATGAAAAATACAAGCAGGATCACATTGCATTAAATGA
TGCGTTTGGAAGCAgtttttcaatgttttgtttGTGTGTTTTTGATATTG
AACTATGATCTACTGTTAGTAGAGGCTGCAGAATTTCAATCGTCTAATCT
CATTCAAGTTGTGGCAGAAAAAGATGATTGTTTGTACGCTCACAATTTCC
TACGCCGCATCCACCGAGCACCCGCTTTTACATGGGACGAAGATTTAGCT
AACAAAGCAAAAAACTGGACGTCATACCTAGCGTCTATAGGAGAGATTAA
ACATAGCAACCCTCGTTTCCAGTATCGCGAGAATATCCACCATTATTGGG
GTGGTAGTGAAGGATACGACATCGTTTCCGCTATCCGAGCTTGGTATGGT
ACGGTTCGCTTGTACGATTTCAACAACAATAAAATATCCAATCCGATGTC
TTTGATGTTCGCCATTATGATGTGGGATGAAACCACGCGCATCGGTTGTG
CAATCTCACGGAACCGAAAAGATAACGAAGGTTTTGTGGTTGTGATGTAC
GCCCCGGGCGTTATGAACCATGGGGCGGATAATTATAAACGACATCTACA
CCGCCCGATAAATCTTTCGGATAGAGACTTTATTGATTCAAAACAAATAC
GTCTTCCGACATTTGAAGAATTAAAACGCCCTGGTGACGATCCAGATGAT
TTGCATTGGTTGACTGAACCGCTTTATGGTGTGTCCATGAAAAATACAAG
CAGGATCACATTGCATTAAATGATGCGTTTGGAAGCAgtttttcaatgtt
ttgtttGTGTGTTTTTGATATTGAACTATGATCTACTGTTAGTAGAGGCT
GCAGAATTTCAATCGTCTAATCTCATTCAAGTTGTGGCAGAAAAAGATGA
TTGTTTGTACGCTCACAATTTCCTACGCCGCATCCACCGAGCACCCGCTT
TTACATGGGACGAAGATTTAGCTAACAAAGCAAAAAACTGGACGTCATAC
CTAGCGTCTATAGGAGAGATTAAACATAGCAACCCTCGTTTCCAGTATCG
CGAGAATATCCACCATTATTGGGGTGGTAGTGAAGGATACGACATCGTTT
CCGCTATCCGAGCTTGGTATGGTACGGTTCGCTTGTACGATTTCAACAAC
AATAAAATATCCAATCCGATGTCTTTGATGTTCGCCATTATGATGTGGGA
TGAAACCACGCGCATCGGTTGTGCAATCTCACGGAACCGAAAAGATAACG
AAGGTTTTGTGGTTGTGATGTACGCCCCGGGCGTTATGAACCATGGGGCG
GATAATTATAAACGACATCTACACCGCCCGATAAATCTTTCGGATAGAGA
CTTTATTGATTCAAAACAAATACGTCTTCCGACATTTGAAGAATTAAAAC
GCCCTGGTGACGATCCAGATGATTTGCATTGGTTGACTGAACCGCTTTAT
GGTGTGTCCATGAAAAATACAAGCAGGATCACATTGCATTAAATGATGCG
TTTGGAAGCAgtttttcaatgttttgtttGTGTGTTTTTGATATTGAACT
ATGATCTACTGTTAGTAGAGGCTGCAGAATTTCAATCGTCTAATCTCATT
CAAGTTGTGGCAGAAAAAGATGATTGTTTGTACGCTCACAATTTCCTACG
CCGCATCCACCGAGCACCCGCTTTTACATGGGACGAAGATTTAGCTAACA
AAGCAAAAAACTGGACGTCATACCTAGCGTCTATAGGAGAGATTAAACAT
AGCAACCCTCGTTTCCAGTATCGCGAGAATATCCACCATTATTGGGGTGG
TAGTGAAGGATACGACATCGTTTCCGCTATCCGAGCTTGGTATGGTACGG
TTCGCTTGTACGATTTCAACAACAATAAAATATCCAATCCGATGTCTTTG
ATGTTCGCCATTATGATGTGGGATGAAACCACGCGCATCGGTTGTGCAAT
CTCACGGAACCGAAAAGATAACGAAGGTTTTGTGGTTGTGATGTACGCCC
CGGGCGTTATGAACCATGGGGCGGATAATTATAAACGACATCTACACCGC
CCGATAAATCTTTCGGATAGAGACTTTATTGATTCAAAACAAATACGTCT
TCCGACATTTGAAGAATTAAAACGCCCTGGTGACGATCCAGATGATTTGC
ATTGGTTGACTGAACCGCTTTATGGTGTGTCCATGAAAAATACAAGCAGG
ATCACATTGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025014-exon-sc0000515-1491911889:206010..206306 | TCONS_00025014-exon-sc0000515-1491911889:206010..206306 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1510915933:206010..206306 | TCONS_00025014-exon-sc0000515-1510915933:206010..206306 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1575043694:206010..206306 | TCONS_00025014-exon-sc0000515-1575043694:206010..206306 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1491911889:206933..206977 | TCONS_00025014-exon-sc0000515-1491911889:206933..206977 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1510915933:206933..206977 | TCONS_00025014-exon-sc0000515-1510915933:206933..206977 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1575043694:206933..206977 | TCONS_00025014-exon-sc0000515-1575043694:206933..206977 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1491911889:207380..207599 | TCONS_00025014-exon-sc0000515-1491911889:207380..207599 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1510915933:207380..207599 | TCONS_00025014-exon-sc0000515-1510915933:207380..207599 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1575043694:207380..207599 | TCONS_00025014-exon-sc0000515-1575043694:207380..207599 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1491911889:209620..209858 | TCONS_00025014-exon-sc0000515-1491911889:209620..209858 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1510915933:209620..209858 | TCONS_00025014-exon-sc0000515-1510915933:209620..209858 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1575043694:209620..209858 | TCONS_00025014-exon-sc0000515-1575043694:209620..209858 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1491911889:210042..210521 | TCONS_00025014-exon-sc0000515-1491911889:210042..210521 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1510915933:210042..210521 | TCONS_00025014-exon-sc0000515-1510915933:210042..210521 | Clytia hemisphaerica | exon |
| TCONS_00025014-exon-sc0000515-1575043694:210042..210521 | TCONS_00025014-exon-sc0000515-1575043694:210042..210521 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000515 | supercontig | sc0000515:206010..210521 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014044 | CAP_domain |
Blast
The following BLAST results are available for this feature:
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